Miyakogusa Predicted Gene

Lj4g3v0386170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0386170.1 Non Chatacterized Hit- tr|G7IS69|G7IS69_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,50.89,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL;
COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING
2/NUR77,NU,CUFF.47059.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64400.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: CHCH (Inte...   110   2e-25
AT5G09570.1 | Symbols:  | Cox19-like CHCH family protein | chr5:...   103   4e-23
AT5G64400.2 | Symbols:  | BEST Arabidopsis thaliana protein matc...    58   2e-09

>AT5G64400.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: CHCH
           (InterPro:IPR010625); BEST Arabidopsis thaliana protein
           match is: Cox19-like CHCH family protein
           (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:25748922-25750182
           FORWARD LENGTH=144
          Length = 144

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 64/95 (67%), Gaps = 2/95 (2%)

Query: 46  TMAQGMALGTGSAIAHRAMDAVMGPRVVQXXXXXXXXXXXXXXXXXXXFGGDACGIHTKA 105
           T+AQGMA GTGSA+AHRA+D+VMGPR +Q                        C IH KA
Sbjct: 52  TIAQGMAFGTGSAVAHRAVDSVMGPRTIQHEAVEAASASAAPAGSAML--SSTCDIHAKA 109

Query: 106 FQDCINSYGADISKCQFYMDMLAECRKNSGSSLSA 140
           FQDCI SYG++ISKCQFYMDML+ECRKNSGS + A
Sbjct: 110 FQDCIGSYGSEISKCQFYMDMLSECRKNSGSVIGA 144


>AT5G09570.1 | Symbols:  | Cox19-like CHCH family protein |
           chr5:2970733-2971970 FORWARD LENGTH=139
          Length = 139

 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 7/96 (7%)

Query: 45  ATMAQGMALGTGSAIAHRAMDAVMGPRVVQXXXXXXXXXXXXXXXXXXXFGGDACGIHTK 104
           A++ +G+A GTG+A  HR +D+VMGPR  +                       AC IH+K
Sbjct: 51  ASITEGLAWGTGTAFGHRVVDSVMGPRTFKHETVVSQVPSAANTMT-------ACDIHSK 103

Query: 105 AFQDCINSYGADISKCQFYMDMLAECRKNSGSSLSA 140
           AFQDC+N +G+DISKCQFYMDML+EC+KNSGS ++A
Sbjct: 104 AFQDCVNHFGSDISKCQFYMDMLSECKKNSGSVVAA 139


>AT5G64400.2 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: Cox19-like CHCH family protein (TAIR:AT5G09570.1);
           Has 127 Blast hits to 125 proteins in 40 species: Archae
           - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64;
           Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
           | chr5:25748922-25749947 FORWARD LENGTH=162
          Length = 162

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 46  TMAQGMALGTGSAIAHRAMDAVMGPRVVQXXXXXXXXXXXXXXXXXXXFGGDACGIHTKA 105
           T+AQGMA GTGSA+AHRA+D+VMGPR +Q                        C IH KA
Sbjct: 52  TIAQGMAFGTGSAVAHRAVDSVMGPRTIQHEAVEAASASAAPAGSAML--SSTCDIHAKA 109

Query: 106 FQD 108
           FQD
Sbjct: 110 FQD 112