Miyakogusa Predicted Gene

Lj4g3v0281060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0281060.1 Non Chatacterized Hit- tr|I3SNB2|I3SNB2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.7,3.00004e-41,no description,NULL; snRNP Sm
proteins,Ribonucleoprotein LSM domain, eukaryotic/archaea-type;
LSM,Ri,CUFF.46786.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48870.1 | Symbols: SAD1 | Small nuclear ribonucleoprotein fa...   165   6e-42
AT4G30330.1 | Symbols:  | Small nuclear ribonucleoprotein family...    49   7e-07
AT2G18740.1 | Symbols:  | Small nuclear ribonucleoprotein family...    47   2e-06

>AT5G48870.1 | Symbols: SAD1 | Small nuclear ribonucleoprotein
          family protein | chr5:19813407-19814362 FORWARD
          LENGTH=88
          Length = 88

 Score =  165 bits (418), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/85 (94%), Positives = 84/85 (98%)

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
          R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61 RVTKLDQILLNGNNIAILVPGGSPE 85


>AT4G30330.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr4:14836773-14837919 REVERSE LENGTH=88
          Length = 88

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E 
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
           I  + R+   L +ILL G+NI +++  G 
Sbjct: 61 SIKKKTRK--PLGRILLKGDNITLMMNAGK 88


>AT2G18740.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:8123334-8124710 FORWARD LENGTH=88
          Length = 88

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E 
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
           I    R+   L +ILL G+NI +++  G 
Sbjct: 61 SIKKNTRK--PLGRILLKGDNITLMMNTGK 88