Miyakogusa Predicted Gene

Lj4g3v0109430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0109430.1 Non Chatacterized Hit- tr|Q8L8V8|Q8L8V8_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,45.26,3e-18,Pollen_Ole_e_I,Pollen Ole e 1 allergen/extensin;
seg,NULL,CUFF.46427.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47635.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...   119   2e-27
AT2G40113.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...    95   2e-20
AT4G17215.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...    93   1e-19

>AT5G47635.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr5:19307281-19307849 REVERSE
           LENGTH=164
          Length = 164

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 7/143 (4%)

Query: 40  QLSSRDEVVQMAGYGEEKLSTVLITGSVNCQARFHNGDQPHAWPIPGAWVGVHCHSSASE 99
            L +R E+V+MAGYGE+KLS+V+ITGS+ C     +    H+ PIPGA V + CH+ +  
Sbjct: 25  NLWTRTEMVEMAGYGEQKLSSVVITGSLLCDT---SRPHLHSIPIPGATVAIKCHTGSKR 81

Query: 100 RKGKSMEVRGVTDEFGDFMVDLPSHLHSIPNLENICVVKVHRIPKGSLCQPAHVKKHKGV 159
           R   S  ++ VTDE G+F +DLPS LH+IP+LEN C +K   +P+   C       HK +
Sbjct: 82  R---SKWIKAVTDELGEFEIDLPSQLHAIPHLENTCFIKPVYVPRPYRCYNTSTNIHKPI 138

Query: 160 LELSSIGNGIRTYDAGSIRILHH 182
            +L S  NG R Y +G IR+  H
Sbjct: 139 -KLVSSTNGFRVYTSGKIRLQGH 160


>AT2G40113.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr2:16750254-16750906 FORWARD
           LENGTH=169
          Length = 169

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 18/143 (12%)

Query: 40  QLSSRDEVVQMAGYGEEKLSTVLITGSVNCQARFHNGDQPHAWPIPGAWVGVHCHSSASE 99
           +L S  E+  MAGYGE KLS+V+ITGS+ C             P+ GA V + CH+   +
Sbjct: 26  KLWSIREMSDMAGYGEHKLSSVVITGSLLCNT-----------PVSGATVAIKCHTGLKQ 74

Query: 100 RKGKSMEVRGVTDEFGDFMVDLPSHLHSIPNLENICVVKVHRIPKGS-LCQPAHVKK--H 156
           R   S  ++ VT++FG+F++ LPSHLH+IP LE  C VK   +PK    C     K   H
Sbjct: 75  R---SKWIKSVTNDFGEFVIHLPSHLHAIPQLEKACFVKPIHVPKHYHRCYHTFSKSNIH 131

Query: 157 KGVLELSSIGNGIRTYDAGSIRI 179
           K + +L S  NG R Y +G+I++
Sbjct: 132 KDI-KLVSSRNGFRVYTSGTIKL 153


>AT4G17215.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr4:9655884-9656425 FORWARD LENGTH=150
          Length = 150

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 85/137 (62%), Gaps = 16/137 (11%)

Query: 43  SRDEVVQMAGYGEEKLSTVLITGSVNCQARFHNGDQPHAWPIPGAWVGVHCHSSASERKG 102
           SRDE+V+MAGYGE+KLS+VL+T S+   +         + PI GA +G  CH+    R  
Sbjct: 25  SRDEMVEMAGYGEQKLSSVLLTASLLSSS---------SSPIHGATIGFKCHTGHRRR-- 73

Query: 103 KSMEVRGVTDEFGDFMVDLPSHLHSIPNLENICVVKVHRIPKGSLCQPAHVKKHKGVLEL 162
            S  ++ VT+E G F++DLPSHLH+IP+L+  C++K   +PK   C     K H+G+  L
Sbjct: 74  -SKWIKAVTNELGQFVIDLPSHLHAIPDLDKACIIKTLSVPKPYRCSS---KIHRGIQLL 129

Query: 163 SSIGNGIRTYDAGSIRI 179
           SS  NG R Y AG+I +
Sbjct: 130 SS-SNGSRVYTAGNITL 145