Miyakogusa Predicted Gene

Lj3g3v3639920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639920.1 Non Chatacterized Hit- tr|I1LP26|I1LP26_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46889
PE,80.79,0,Eukaryotic DNA topoisomerase I, N-terminal DNA-binding
fragment,DNA topoisomerase I, DNA binding, eu,CUFF.46130.1
         (898 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55310.1 | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 beta...   851   0.0  
AT5G55300.1 | Symbols: MGO1, TOP1ALPHA, TOP1 | DNA topoisomerase...   838   0.0  
AT5G55300.2 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha | c...   830   0.0  
AT5G55300.3 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha | c...   385   e-107
AT4G26701.1 | Symbols:  | DNA binding;DNA topoisomerase type Is ...   130   4e-30

>AT5G55310.1 | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 beta |
           chr5:22430389-22434590 REVERSE LENGTH=917
          Length = 917

 Score =  851 bits (2199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/549 (72%), Positives = 453/549 (82%)

Query: 350 GDGQKKWTTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLKD 409
           GDGQKKW TL HNGVIFPPPY+ H VK+L++GKPVDLT +QEEVATM+AVMR+T+Y  K 
Sbjct: 363 GDGQKKWKTLQHNGVIFPPPYKRHGVKILFQGKPVDLTPEQEEVATMFAVMRETEYYKKP 422

Query: 410 KFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXXX 469
           KF+ENFWNDWRKLLGKNH+I++L DCDFTPIY+W                          
Sbjct: 423 KFRENFWNDWRKLLGKNHMIKSLDDCDFTPIYEWYMQEKETKKQMTAEEKRIVKEEKLKQ 482

Query: 470 XXXXXWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPE 529
                WA++DGV+E++GNFRVEPPGLFRGRGEHPKMGKLK+RIRP DI INIGK+APIPE
Sbjct: 483 EEKYMWAVLDGVRERIGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITINIGKEAPIPE 542

Query: 530 CPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKD 589
           CPIPGERWKE++HDNTVTWLAFW+DPINPK FKYVFLAASSSLKGQSDKEKYEKAR L +
Sbjct: 543 CPIPGERWKEVKHDNTVTWLAFWSDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLHN 602

Query: 590 YIGNIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVT 649
           +IG+IRAAYTKDF +KD+TK+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV 
Sbjct: 603 HIGSIRAAYTKDFNNKDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 662

Query: 650 REAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAHLK 709
              PNKLKF+FLGKDSI+Y NTVEVE  VY AI +FQ  K   DDLFD LDTSKLN HLK
Sbjct: 663 CIPPNKLKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNTHLK 722

Query: 710 ELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKS 769
           ELM GLTAKVFRT+NASITLD ML+K+T+DGDV EK+VVYQ ANK+VAIICNHQR+VSKS
Sbjct: 723 ELMAGLTAKVFRTYNASITLDLMLSKETRDGDVPEKVVVYQQANKEVAIICNHQRTVSKS 782

Query: 770 HDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKKISQTN 829
           H  Q+ +L  K++EL+  +KEL  DLDRA+               NL+ EALEKKI QT 
Sbjct: 783 HGAQVEKLAVKIEELREQIKELNIDLDRAKKGRTPLMGSDGKRKRNLTPEALEKKIMQTQ 842

Query: 830 AKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWA 889
            KIEKM+RDM+TKED+KTVALGTSKINY+DPRITVAWCKRH+VPIEKIFNKSLLAKF WA
Sbjct: 843 GKIEKMERDMQTKEDMKTVALGTSKINYMDPRITVAWCKRHDVPIEKIFNKSLLAKFAWA 902

Query: 890 MDVDPDFRF 898
           MDVDP+FRF
Sbjct: 903 MDVDPEFRF 911


>AT5G55300.1 | Symbols: MGO1, TOP1ALPHA, TOP1 | DNA topoisomerase I
           alpha | chr5:22424837-22429045 REVERSE LENGTH=916
          Length = 916

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/549 (71%), Positives = 445/549 (81%)

Query: 350 GDGQKKWTTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLKD 409
           GDGQKKWTTLVHNGVIFPPPY+PH +K+LYKGKPVDLT +QEEVATM+AVMR+TDY  K 
Sbjct: 365 GDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGKPVDLTIEQEEVATMFAVMRETDYYTKP 424

Query: 410 KFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXXX 469
           +F+ENFWNDWR+LLGK HVIQ L DCDFTPIY+W                          
Sbjct: 425 QFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWHLEEKEKKKQMSTEEKKALKEEKMKQ 484

Query: 470 XXXXXWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPE 529
                WA+VDGVKEK+GNFRVEPPGLFRGRGEHPKMGKLK+RI P +I +NIGK APIPE
Sbjct: 485 EEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMGKLKKRIHPCEITLNIGKGAPIPE 544

Query: 530 CPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKD 589
           CPI GERWKE++HDNTVTWLAFW DPINPK FKYVFL A SSLKG SDKEKYEKAR L D
Sbjct: 545 CPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTD 604

Query: 590 YIGNIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVT 649
           +I NIR  YTK+FT+KD+  +QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV 
Sbjct: 605 HIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 664

Query: 650 REAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAHLK 709
              PNK+KF+FLGKDSI+Y NTVEVE  VY AI +FQ  K   DDLFD LDTSKLNAHLK
Sbjct: 665 CIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLK 724

Query: 710 ELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKS 769
           EL+PGLTAKVFRT+NASITLD+ML+++TKDGDV +KIVVYQ ANK+VAIICNHQR+VSK+
Sbjct: 725 ELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAIICNHQRTVSKT 784

Query: 770 HDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKKISQTN 829
           H  Q+ +L  +++EL+ VLKEL+T+LDRA+               +L   A EKKI+Q +
Sbjct: 785 HGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPLEGSDGKKIRSLEPNAWEKKIAQQS 844

Query: 830 AKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWA 889
           AKIEKM+RDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF WA
Sbjct: 845 AKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWA 904

Query: 890 MDVDPDFRF 898
           MDV+P++RF
Sbjct: 905 MDVEPEYRF 913


>AT5G55300.2 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha |
           chr5:22424701-22429045 REVERSE LENGTH=933
          Length = 933

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/546 (71%), Positives = 442/546 (80%)

Query: 350 GDGQKKWTTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLKD 409
           GDGQKKWTTLVHNGVIFPPPY+PH +K+LYKGKPVDLT +QEEVATM+AVMR+TDY  K 
Sbjct: 365 GDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGKPVDLTIEQEEVATMFAVMRETDYYTKP 424

Query: 410 KFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXXX 469
           +F+ENFWNDWR+LLGK HVIQ L DCDFTPIY+W                          
Sbjct: 425 QFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWHLEEKEKKKQMSTEEKKALKEEKMKQ 484

Query: 470 XXXXXWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPE 529
                WA+VDGVKEK+GNFRVEPPGLFRGRGEHPKMGKLK+RI P +I +NIGK APIPE
Sbjct: 485 EEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMGKLKKRIHPCEITLNIGKGAPIPE 544

Query: 530 CPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKD 589
           CPI GERWKE++HDNTVTWLAFW DPINPK FKYVFL A SSLKG SDKEKYEKAR L D
Sbjct: 545 CPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTD 604

Query: 590 YIGNIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVT 649
           +I NIR  YTK+FT+KD+  +QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV 
Sbjct: 605 HIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 664

Query: 650 REAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAHLK 709
              PNK+KF+FLGKDSI+Y NTVEVE  VY AI +FQ  K   DDLFD LDTSKLNAHLK
Sbjct: 665 CIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLK 724

Query: 710 ELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKS 769
           EL+PGLTAKVFRT+NASITLD+ML+++TKDGDV +KIVVYQ ANK+VAIICNHQR+VSK+
Sbjct: 725 ELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAIICNHQRTVSKT 784

Query: 770 HDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKKISQTN 829
           H  Q+ +L  +++EL+ VLKEL+T+LDRA+               +L   A EKKI+Q +
Sbjct: 785 HGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPLEGSDGKKIRSLEPNAWEKKIAQQS 844

Query: 830 AKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWA 889
           AKIEKM+RDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF WA
Sbjct: 845 AKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWA 904

Query: 890 MDVDPD 895
           MDV+P+
Sbjct: 905 MDVEPE 910


>AT5G55300.3 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha |
           chr5:22424837-22429045 REVERSE LENGTH=564
          Length = 564

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/265 (70%), Positives = 217/265 (81%)

Query: 634 EADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGD 693
           EADTVGCCTLKV NV    PNK+KF+FLGKDSI+Y NTVEVE  VY AI +FQ  K   D
Sbjct: 297 EADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTD 356

Query: 694 DLFDMLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHAN 753
           DLFD LDTSKLNAHLKEL+PGLTAKVFRT+NASITLD+ML+++TKDGDV +KIVVYQ AN
Sbjct: 357 DLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKAN 416

Query: 754 KQVAIICNHQRSVSKSHDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXX 813
           K+VAIICNHQR+VSK+H  Q+ +L  +++EL+ VLKEL+T+LDRA+              
Sbjct: 417 KEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPLEGSDGKKI 476

Query: 814 XNLSSEALEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 873
            +L   A EKKI+Q +AKIEKM+RDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVP
Sbjct: 477 RSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVP 536

Query: 874 IEKIFNKSLLAKFTWAMDVDPDFRF 898
           IEKIF KSLL KF WAMDV+P++RF
Sbjct: 537 IEKIFTKSLLEKFAWAMDVEPEYRF 561


>AT4G26701.1 | Symbols:  | DNA binding;DNA topoisomerase type Is |
           chr4:13467746-13468055 FORWARD LENGTH=69
          Length = 69

 Score =  130 bits (327), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 63/68 (92%)

Query: 831 KIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAM 890
           KIEKM+RDM+TKEDLKTVALGTSKINY+DPRITVAWCKRHE PIEKIFNKSLL KF WAM
Sbjct: 2   KIEKMERDMQTKEDLKTVALGTSKINYMDPRITVAWCKRHEAPIEKIFNKSLLEKFAWAM 61

Query: 891 DVDPDFRF 898
           DV+P F F
Sbjct: 62  DVEPHFTF 69