Miyakogusa Predicted Gene

Lj3g3v3553980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3553980.1 CUFF.46004.1
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47450.1 | Symbols: CAO, CPSRP43 | chloroplast signal recogni...   197   5e-51

>AT2G47450.1 | Symbols: CAO, CPSRP43 | chloroplast signal
           recognition particle component (CAO) |
           chr2:19472781-19473902 FORWARD LENGTH=373
          Length = 373

 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/173 (57%), Positives = 120/173 (69%), Gaps = 1/173 (0%)

Query: 1   MAALHMAAGYVRPGVAKLLLELGADPEVEDKRGRTALDLARELLNATPKGNPMQFXXXXX 60
           + ALHMAAGYVRP V + L+ELGAD EVED+RG TAL+LARE+L  TPKGNPMQF     
Sbjct: 195 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 254

Query: 61  XXXXXXXXXXAVFEYAEVEEILERRGKGENLEYLVRWKDGGGNEWVNARFVAEDLVRDYE 120
                      VFEYAEV+EI+E+RGKG+++EYLVRWKDGG  EWV    VAED+ +DYE
Sbjct: 255 LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE 314

Query: 121 AGLEYXXXXXXXXXXXXDEGK-LELLVKWVDLEQPTWEPEENVDPELVKLYEQ 172
            GLEY            D+GK +E LVKW D+   TWEP++NVD  LV LY+Q
Sbjct: 315 DGLEYAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVDSTLVLLYQQ 367