Miyakogusa Predicted Gene

Lj3g3v3338560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3338560.1 Non Chatacterized Hit- tr|Q9SZ07|Q9SZ07_ARATH
Putative uncharacterized protein AT4g34420
OS=Arabidop,52.08,3e-17,seg,NULL,CUFF.45661.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...    77   4e-15
AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...    77   4e-15
AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...    77   4e-15
AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...    77   4e-15

>AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protein
          | chr4:16461069-16464993 FORWARD LENGTH=985
          Length = 985

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 59/85 (69%), Gaps = 9/85 (10%)

Query: 1  MEEKRRETASQ---PPPTTDSPASEPVP-PRRRAGGNKRKASA---SNP-SSIPSKRA-T 51
          MEEKRR++A        + DSPASEP+P PRRR GG KRKA+A   SN  SS PSKR  T
Sbjct: 1  MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 52 REKASPIHFPPLHNGPLTRARQIPS 76
          REKA    F P+HNGPLTRARQ PS
Sbjct: 61 REKAMLASFSPVHNGPLTRARQAPS 85


>AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protein
          | chr4:16461069-16464993 FORWARD LENGTH=986
          Length = 986

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 59/85 (69%), Gaps = 9/85 (10%)

Query: 1  MEEKRRETASQ---PPPTTDSPASEPVP-PRRRAGGNKRKASA---SNP-SSIPSKRA-T 51
          MEEKRR++A        + DSPASEP+P PRRR GG KRKA+A   SN  SS PSKR  T
Sbjct: 1  MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 52 REKASPIHFPPLHNGPLTRARQIPS 76
          REKA    F P+HNGPLTRARQ PS
Sbjct: 61 REKAMLASFSPVHNGPLTRARQAPS 85


>AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protein
          | chr4:16461069-16464993 FORWARD LENGTH=985
          Length = 985

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 59/85 (69%), Gaps = 9/85 (10%)

Query: 1  MEEKRRETASQ---PPPTTDSPASEPVP-PRRRAGGNKRKASA---SNP-SSIPSKRA-T 51
          MEEKRR++A        + DSPASEP+P PRRR GG KRKA+A   SN  SS PSKR  T
Sbjct: 1  MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 52 REKASPIHFPPLHNGPLTRARQIPS 76
          REKA    F P+HNGPLTRARQ PS
Sbjct: 61 REKAMLASFSPVHNGPLTRARQAPS 85


>AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protein
          | chr4:16461069-16464993 FORWARD LENGTH=983
          Length = 983

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 59/85 (69%), Gaps = 9/85 (10%)

Query: 1  MEEKRRETASQ---PPPTTDSPASEPVP-PRRRAGGNKRKASA---SNP-SSIPSKRA-T 51
          MEEKRR++A        + DSPASEP+P PRRR GG KRKA+A   SN  SS PSKR  T
Sbjct: 1  MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 52 REKASPIHFPPLHNGPLTRARQIPS 76
          REKA    F P+HNGPLTRARQ PS
Sbjct: 61 REKAMLASFSPVHNGPLTRARQAPS 85