Miyakogusa Predicted Gene

Lj3g3v3200860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3200860.1 tr|B9HPH5|B9HPH5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_768209 PE=4
SV=1,32.68,1e-18,seg,NULL; DUF4378,Domain of unknown function
DUF4378,gene.g50434.t1.1
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07620.1 | Symbols: ATOBGM | GTP-binding protein Obg/CgtA | c...    69   2e-12
AT5G02390.1 | Symbols:  | Protein of unknown function (DUF3741) ...    64   6e-11

>AT1G07620.1 | Symbols: ATOBGM | GTP-binding protein Obg/CgtA |
           chr1:2344556-2346374 REVERSE LENGTH=552
          Length = 552

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 68/127 (53%), Gaps = 12/127 (9%)

Query: 84  LEVSLCNKIESCGEETINPYHYQLLFSVVKEVVYEIYEGSPIHFPKHYFNRCLYSMHREH 143
           L  SL  +++   EET+N    +LLF +V E + E    S I+FPK +     Y      
Sbjct: 432 LNPSLLYELDIQEEETVN--DKELLFDLVNEAIVETQNHSQIYFPKTFPYGKRY------ 483

Query: 144 YLLHEVWTRVNSYLS-LRISEQDHSIDAVVGQDL-AKRSGWVKFQQEEEHAVLELEGMIV 201
             L EVW RV   LS L    +D S+D +VG+DL  K  GW+  Q E E   LELE +I 
Sbjct: 484 --LDEVWGRVEWSLSGLGAENRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIF 541

Query: 202 DDLLNEV 208
           DD+L+E+
Sbjct: 542 DDVLDEL 548


>AT5G02390.1 | Symbols:  | Protein of unknown function (DUF3741) |
           chr5:508764-511710 REVERSE LENGTH=835
          Length = 835

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 38  DADKDPNFKCVKDVFGFLCFMGYEDIQMWHXXXXXXXXXXXXXXMDLEVSLCNKIESCG- 96
           DA     F  V+D+     F   E + MW                        +   C  
Sbjct: 658 DAQDKVKFNYVRDILEISGFNAPESLSMWQLDYQPLDPLVYEEVTTTTTGCMFQDPECSR 717

Query: 97  -EETINPYHYQLLFSVVKEVVYEIYEGSPIHFPKHYFNRC-LYSMHREHYLLHEVWTRVN 154
            EE     ++ LLF ++ EV+ EIYE S  ++PK   + C ++ M   + +L EVW R++
Sbjct: 718 NEEEGGNCNHLLLFDLINEVLIEIYERSYHYYPKPLSSLCKIHPMPVGYSVLKEVWVRIS 777

Query: 155 SYLSLRISEQDHSIDAVVGQDLAKRSGWVKFQQEEEHAVLELEGMI 200
            YL  +  ++  S D V+ +DL++  GW+  Q E E   +E+E +I
Sbjct: 778 CYLRYKPYDEQQSFDKVMSRDLSRDDGWMDLQFESECVGIEVEDLI 823