Miyakogusa Predicted Gene

Lj3g3v3154040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3154040.1 gi|4138130|emb|AJ011828.1|.path2.1
         (658 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03090.2 | Symbols:  | sequence-specific DNA binding;sequence...   402   e-112
AT4G03090.1 | Symbols:  | sequence-specific DNA binding;sequence...   401   e-112

>AT4G03090.2 | Symbols:  | sequence-specific DNA
           binding;sequence-specific DNA binding transcription
           factors | chr4:1366495-1370910 REVERSE LENGTH=879
          Length = 879

 Score =  402 bits (1032), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 271/672 (40%), Positives = 369/672 (54%), Gaps = 89/672 (13%)

Query: 1   MLSILLILCEAESLSFLDEVASSQQSLDLAKSVALEVFDLLKTTFGRNPGHFTTADRSYP 60
           +LSIL  L EAES+SFLDEVA++  +L LAK+VA EV  LL+   G +     TA   YP
Sbjct: 276 VLSILQHLFEAESVSFLDEVANAG-NLHLAKTVASEVLKLLR--LGLSKASMATASPDYP 332

Query: 61  MGHLQLNAMRLADIFSDDSNFRSYMTVCFTKVLTAIISLSHGDFLSCWCSSNLPEIEEDA 120
           MG + LNAMRLAD+ +DDSNFRS+ T  F+ VL+A+  LSHGDFLS  CSS+L   E+DA
Sbjct: 333 MGFVLLNAMRLADVLTDDSNFRSFFTEHFSMVLSAVFCLSHGDFLSMLCSSDLSSREDDA 392

Query: 121 SLEYDTFAAVGWVLDNTSSQDLPNATILEFNL-VPNRVSSVSYAHHRTSFFVKIIANLHC 179
           +++YD F + GW+L   SS     +   +F L + N ++  SYAH RTS F+K+IANLHC
Sbjct: 393 NVDYDLFKSAGWILSVFSSSG--QSVTPQFKLSLQNNLTMSSYAHQRTSLFIKMIANLHC 450

Query: 180 FVPNICEEQERNLFVLKVLEYLQMD----LSNLLPGFSFASDVPKAATVSKNLRSLLSHA 235
           FVPN+C+EQ+RN F+  V+  L+ D    L  +LPG S+     +   V +NL SLL HA
Sbjct: 451 FVPNVCQEQDRNRFIQNVMSGLRKDPSSILIKMLPGSSYTPVAQRGTGVCRNLGSLLRHA 510

Query: 236 ESLIPKFLNEEDVHLLRVFLGELQSLFTSTGIGGNHVQDNKFEELSWDKFSKLVNKHYQE 295
           ESLIP  LNEED  LLRVF  +LQ L  S           +FEE                
Sbjct: 511 ESLIPSSLNEEDFLLLRVFCDQLQPLIHS-----------EFEE---------------- 543

Query: 296 AHSTARCSSLIQQEPSELSKKGGN----LKEGMSENSSFPGTGQCTTRAEITNLGNDLSR 351
                      Q +  ++  +GGN    LKE ++ N+    +  C  R E       +++
Sbjct: 544 ----------SQVQVKDIEGRGGNLSGKLKELLNLNNE-EASEDCDVRVEGV-----MTK 587

Query: 352 QDQVEDKDIAGKTVSRGARDFDKDCQNAEXXXXXXXXAKGKSVIDHMDSGELSKSVAHPK 411
           Q   E+ D    TV R  ++ D D  N E         +GK +++    GEL ++++   
Sbjct: 588 QGVNEEID----TVER-LKESDADASNLETSGSDTSSNRGKGLVEE---GELVQNMSKRF 639

Query: 412 KVTV-GETPEDEKVETV-----PRRKRKRTIMNDEQVMLIERALLDEPDMQRNAASLQSW 465
           K +  GE  EDEK ET       ++KRKR+IMN +Q+ +IE+AL +EPD+QRN+AS Q W
Sbjct: 640 KGSASGEVKEDEKSETFLVFEKQKKKRKRSIMNADQMGMIEKALAEEPDLQRNSASRQLW 699

Query: 466 ADKLSLHGSDV-TPSQIKNWLNNRKARLARTAKDVPAADVAKSVPDKPRGPSLGPYASPD 524
           ADK+S  GS+V T SQ+KNWLNNRKA+LAR  K    A    S  D P  P         
Sbjct: 700 ADKISQKGSEVITSSQLKNWLNNRKAKLARANKQTGPAHDNNSSGDLPESP--------- 750

Query: 525 NYGDASNARQDLLSLAKIASGDNPEPSLAELKAELVDAPPEIVRCNVGQHVVLTDTRGKE 584
             GD +  +Q   +  K  +     P   E       +  E ++   GQ V L D RG E
Sbjct: 751 --GDENTWQQKPSTPIKDQTV-TETPKTGENLMRTSSSSEEGIK--QGQQVRLMDERGDE 805

Query: 585 IGRGKVVQVQGKWYAKSLEESETYVVDVIELKTD---KETRVPYPSEATGTSFAEAASKL 641
           IG+G V++  G+W   SLE  +  VVDV+EL       +  +PY S+  G +F EA S+ 
Sbjct: 806 IGKGTVLRTDGEWNGLSLETRQICVVDVMELSESYDGSKKMIPYGSDDVGRTFTEANSRF 865

Query: 642 GVMRVLWSPRRI 653
           GVMRV W   ++
Sbjct: 866 GVMRVAWDVNKL 877


>AT4G03090.1 | Symbols:  | sequence-specific DNA
           binding;sequence-specific DNA binding transcription
           factors | chr4:1366495-1370937 REVERSE LENGTH=913
          Length = 913

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 273/669 (40%), Positives = 370/669 (55%), Gaps = 58/669 (8%)

Query: 1   MLSILLILCEAESLSFLDEVASSQQSLDLAKSVALEVFDLLKTTFGRNPGHFTTADRSYP 60
           +LSIL  L EAES+SFLDEVA++  +L LAK+VA EV  LL+   G +     TA   YP
Sbjct: 285 VLSILQHLFEAESVSFLDEVANAG-NLHLAKTVASEVLKLLR--LGLSKASMATASPDYP 341

Query: 61  MGHLQLNAMRLADIFSDDSNFRSYMTVCFTKVLTAIISLSHGDFLSCWCSSNLPEIEEDA 120
           MG + LNAMRLAD+ +DDSNFRS+ T  F+ VL+A+  LSHGDFLS  CSS+L   E+DA
Sbjct: 342 MGFVLLNAMRLADVLTDDSNFRSFFTEHFSMVLSAVFCLSHGDFLSMLCSSDLSSREDDA 401

Query: 121 SLEYDTFAAVGWVLDNTSSQDLPNATILEFNL-VPNRVSSVSYAHHRTSFFVKIIANLHC 179
           +++YD F + GW+L   SS     +   +F L + N ++  SYAH RTS F+K+IANLHC
Sbjct: 402 NVDYDLFKSAGWILSVFSSSG--QSVTPQFKLSLQNNLTMSSYAHQRTSLFIKMIANLHC 459

Query: 180 FVPNICEEQERNLFVLKVLEYLQMD----LSNLLPGFSFASDVPKAATVSKNLRSLLSHA 235
           FVPN+C+EQ+RN F+  V+  L+ D    L  +LPG S+     +   V +NL SLL HA
Sbjct: 460 FVPNVCQEQDRNRFIQNVMSGLRKDPSSILIKMLPGSSYTPVAQRGTGVCRNLGSLLRHA 519

Query: 236 ESLIPKFLNEEDVHLLRVFLGELQSLFTSTGIGGN-HVQDNKFEELSWDKFSKLVNKHYQ 294
           ESLIP  LNEED  LLRVF  +LQ L  S        V+  K   L +  F+ L      
Sbjct: 520 ESLIPSSLNEEDFLLLRVFCDQLQPLIHSEFEESQVQVKVKKLFALLYIGFTILW----- 574

Query: 295 EAHSTARCSSLIQQEPSELSKKGGNLKEGMSENSSFPGTGQCTTRAEITNLGNDLSRQDQ 354
                    +LIQ          G LKE ++ N+    +  C  R E       +++Q  
Sbjct: 575 ----LICLVTLIQDIEGRGGNLSGKLKELLNLNNE-EASEDCDVRVE-----GVMTKQGV 624

Query: 355 VEDKDIAGKTVSRGARDFDKDCQNAEXXXXXXXXAKGKSVIDHMDSGELSKSVAHPKKVT 414
            E+ D    TV R  ++ D D  N E         +GK +++    GEL ++++   K +
Sbjct: 625 NEEID----TVER-LKESDADASNLETSGSDTSSNRGKGLVEE---GELVQNMSKRFKGS 676

Query: 415 V-GETPEDEKVETV-----PRRKRKRTIMNDEQVMLIERALLDEPDMQRNAASLQSWADK 468
             GE  EDEK ET       ++KRKR+IMN +Q+ +IE+AL +EPD+QRN+AS Q WADK
Sbjct: 677 ASGEVKEDEKSETFLVFEKQKKKRKRSIMNADQMGMIEKALAEEPDLQRNSASRQLWADK 736

Query: 469 LSLHGSDV-TPSQIKNWLNNRKARLARTAKDVPAADVAKSVPDKPRGPSLGPYASPDNYG 527
           +S  GS+V T SQ+KNWLNNRKA+LAR  K    A    S  D P  P           G
Sbjct: 737 ISQKGSEVITSSQLKNWLNNRKAKLARANKQTGPAHDNNSSGDLPESP-----------G 785

Query: 528 DASNARQDLLSLAKIASGDNPEPSLAELKAELVDAPPEIVRCNVGQHVVLTDTRGKEIGR 587
           D +  +Q   +  K  +     P   E       +  E ++   GQ V L D RG EIG+
Sbjct: 786 DENTWQQKPSTPIKDQTV-TETPKTGENLMRTSSSSEEGIK--QGQQVRLMDERGDEIGK 842

Query: 588 GKVVQVQGKWYAKSLEESETYVVDVIELKTD---KETRVPYPSEATGTSFAEAASKLGVM 644
           G V++  G+W   SLE  +  VVDV+EL       +  +PY S+  G +F EA S+ GVM
Sbjct: 843 GTVLRTDGEWNGLSLETRQICVVDVMELSESYDGSKKMIPYGSDDVGRTFTEANSRFGVM 902

Query: 645 RVLWSPRRI 653
           RV W   ++
Sbjct: 903 RVAWDVNKL 911