Miyakogusa Predicted Gene

Lj3g3v2921000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2921000.1 tr|G7J219|G7J219_MEDTR Replication protein A 70
kDa DNA-binding subunit OS=Medicago truncatula
GN=MT,46.32,5e-18,seg,NULL; Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; DUF223,Domain of unknown,CUFF.44975.1
         (95 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    56   6e-09

>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
          protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 42/79 (53%)

Query: 17 TWNIVTKVVRLWVSPSFSGGKLPFSMELVLMDSKGCQIHASVRKTLVYRFHPLLTEGQVY 76
          T  +  ++ RLW        K    ++L+L+D KG +I AS+R  L+ +F   L EG  Y
Sbjct: 17 TCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCY 76

Query: 77 QISYFGVGDNLGDFRTTTH 95
           I  F + DN G +R ++H
Sbjct: 77 MIMNFEISDNGGSYRASSH 95