Miyakogusa Predicted Gene

Lj3g3v2888360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2888360.1 Non Chatacterized Hit- tr|B9TC41|B9TC41_RICCO
Putative uncharacterized protein (Fragment)
OS=Ricinus,77.59,5e-18,DUF1218,Protein of unknown function DUF1218;
seg,NULL,CUFF.44884.1
         (160 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32280.1 | Symbols:  | Protein of unknown function (DUF1218) ...   202   7e-53
AT4G21310.1 | Symbols:  | Protein of unknown function (DUF1218) ...   198   1e-51
AT1G11500.1 | Symbols:  | Protein of unknown function (DUF1218) ...   103   4e-23
AT1G05291.1 | Symbols:  | Protein of unknown function (DUF1218) ...    72   2e-13

>AT2G32280.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr2:13713210-13713977 FORWARD LENGTH=163
          Length = 163

 Score =  202 bits (515), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 91/160 (56%), Positives = 120/160 (75%)

Query: 1   MARVVGIFLCLLIIIMDVAAGILAFQAEIAQNKVKHLRLWIFECREPSHQAFMXXXXXXX 60
           M ++ GI +CL+I+ +DVAA IL  QAE+AQN+VKH+RLW+FECREPS  AF        
Sbjct: 1   MTKIGGILVCLVIVGLDVAAAILGIQAEVAQNQVKHMRLWLFECREPSQDAFRLGLGAAA 60

Query: 61  XXXXXXXXXNLLGGCSCICSQQEFEKAAPSRQLSVACLILTWVLLAVGLSMLVIGALSNN 120
                    NL+GGC CICSQ EF++++ +RQ+S+ACL+LTW++ AVG   +VIG +SN+
Sbjct: 61  ILVMAHVLLNLVGGCLCICSQDEFQRSSSTRQISMACLVLTWIVFAVGFGSIVIGTMSNS 120

Query: 121 RSDGSCGLSHHHFLSIGGISCFVHGLFCVAYYVSATSSMD 160
           +S  SCG +HHHFLSIGGI CF+H LFCVAYYVSAT++ D
Sbjct: 121 KSRSSCGFTHHHFLSIGGILCFLHALFCVAYYVSATAAKD 160


>AT4G21310.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr4:11339134-11339787 REVERSE LENGTH=168
          Length = 168

 Score =  198 bits (503), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 119/158 (75%)

Query: 1   MARVVGIFLCLLIIIMDVAAGILAFQAEIAQNKVKHLRLWIFECREPSHQAFMXXXXXXX 60
           MAR VG F+C+LI+ MDV+AGIL  +AEIAQNKVKHL++WIFECR+PS+ AF        
Sbjct: 1   MARNVGFFICILILAMDVSAGILGIEAEIAQNKVKHLKMWIFECRDPSYTAFKYGLAACI 60

Query: 61  XXXXXXXXXNLLGGCSCICSQQEFEKAAPSRQLSVACLILTWVLLAVGLSMLVIGALSNN 120
                    N LGGC C+ S+Q+ EK++ ++QL+VA LI TW++LA+  SML++G ++N+
Sbjct: 61  LLVLAHVTANFLGGCLCVASRQDLEKSSANKQLAVASLIFTWIILAIAFSMLIVGTMANS 120

Query: 121 RSDGSCGLSHHHFLSIGGISCFVHGLFCVAYYVSATSS 158
           RS  +CG+SHH  LSIGGI CFVHGLF VAYY+SAT+S
Sbjct: 121 RSRKNCGISHHRVLSIGGILCFVHGLFAVAYYISATAS 158


>AT1G11500.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr1:3870833-3871570 FORWARD LENGTH=184
          Length = 184

 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 1   MARVVGIFLCLLIIIMDVAAGILAFQAEIAQNKVKHLRLWIFEC-------REPSHQAFM 53
           M   +G  + ++II  D+ A +L  +AEIAQ+K  H               R PS  AF 
Sbjct: 1   MESELGFLVSVVIICADITATVLGIEAEIAQSKAPHHHHQQHSRHSGSGCRRSPSDGAFA 60

Query: 54  XXXXXXXXXXXXXXXXNLLGGCSCICSQQEFEKAAPSRQLSVACLILTWVLLAVGLSMLV 113
                           N+LGGC+ I S+Q+F++A  ++ L+VA L+L+W+   V  S L+
Sbjct: 61  EGVAAMVLLFIVHVLANVLGGCTYIRSKQDFKRATANKILAVAFLVLSWIFFVVSYSTLM 120

Query: 114 IGALSNNRSDGSCGLSHHHFLSIGGISCFVHGLFCVAYYVSATSS 158
           IG L+N+R++  C L H  F  IGGI C  HG+   AYYVSA ++
Sbjct: 121 IGTLANSRTNRLCSLPHRWFFLIGGIFCLGHGVVTSAYYVSAIAA 165


>AT1G05291.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr1:1541348-1542323 REVERSE LENGTH=204
          Length = 204

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 9/148 (6%)

Query: 12  LIIIMDVAAGILAFQAEIAQNKVKHLRLWIFECREPSHQAFMXXXXXXXXXXXXXXXXNL 71
           L + +D+ AG +  QA+ AQ  VKH +L   EC+ PS  AF+                N+
Sbjct: 23  LTVGLDIVAGFVGLQAQAAQQYVKHDKL---ECKAPSKTAFVLGIIAVSCLATAHVSANV 79

Query: 72  LGGCSCICSQQEFEKAAPSRQLSV----ACLILTWVLLAVGLSMLVIGALSNNRSDGSCG 127
           +G CS I +  +   A P  +++     ACL L WV+   G  +L  G  SN  S   C 
Sbjct: 80  IG-CS-ISNLFQALGALPKNKITTYFNMACLFLIWVVGIFGALILANGIWSNTESRIRCR 137

Query: 128 LSHHHFLSIGGISCFVHGLFCVAYYVSA 155
            +++H  SIGG  CF+H +    YY+S+
Sbjct: 138 FTNNHVFSIGGKVCFLHAIVSGIYYISS 165