Miyakogusa Predicted Gene

Lj3g3v2807970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2807970.1 CUFF.44645.1
         (349 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20760.1 | Symbols:  | Clathrin light chain protein | chr2:89...   244   5e-65
AT2G40060.1 | Symbols:  | Clathrin light chain protein | chr2:16...   179   4e-45
AT3G51890.1 | Symbols:  | Clathrin light chain protein | chr3:19...   161   8e-40

>AT2G20760.1 | Symbols:  | Clathrin light chain protein |
           chr2:8943279-8945108 REVERSE LENGTH=338
          Length = 338

 Score =  244 bits (624), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 137/195 (70%)

Query: 65  NPNPLSPPVYGFGISTPNPDVITPFQSAQPXXXXXXXXXXXXXXXXXXXPILPDPTLMQE 124
           N +P SP  YGFG S+PN D  +PF+S+                     PILPDP  M+E
Sbjct: 47  NGDPASPNGYGFGASSPNHDFSSPFESSVNDANGNGGGSGGDAIFASDGPILPDPNEMRE 106

Query: 125 EGSARREWRRKNAIHLXXXXXXXXXMRNQIIKEAEDFKEAFYAKRKLNCETTKTNNRERE 184
           EG  RREWRR N IHL         MRNQII EAEDFK+AFY KR    ET KT+NRE+E
Sbjct: 107 EGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNREKE 166

Query: 185 KIYLANQEKFHKEADKHYWKAIAEIIPREVPNIEKRRGKKEAENKPSVHVIQGPKPGKPT 244
           K+Y ANQEKFHKE DKHYWKAIAE+IPREVPNIEK+RGKK+ + KPSV+VIQGPKPGKPT
Sbjct: 167 KLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGKPT 226

Query: 245 DLSRMRQMILKLKQN 259
           DL RMRQ+ LKLK N
Sbjct: 227 DLGRMRQIFLKLKTN 241


>AT2G40060.1 | Symbols:  | Clathrin light chain protein |
           chr2:16726564-16728001 FORWARD LENGTH=258
          Length = 258

 Score =  179 bits (453), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 114/149 (76%), Gaps = 3/149 (2%)

Query: 114 PILPDPTLMQ-EEGSARREWRRKNAIHLXXXXXXXXXMRNQIIKEAEDFKEAFYAKRKLN 172
           PILP P+ M+ +EG A REWRR+NAI L         +  QII+EA+ +KE F+ K ++ 
Sbjct: 75  PILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKEEFHKKIEVT 134

Query: 173 CETTKTNNREREKIYLANQEKFHKEADKHYWKAIAEIIPREVPNIEKRRGKKEAEN--KP 230
           CE  K  NRE+EK+YL NQEKF+ E+ K+YWKAIAE++P+EVP IEKRRGKKE ++  KP
Sbjct: 135 CENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKRRGKKEQQDPKKP 194

Query: 231 SVHVIQGPKPGKPTDLSRMRQMILKLKQN 259
           +V VIQGPKPGKPTDL+RMRQ+++KLK N
Sbjct: 195 TVSVIQGPKPGKPTDLTRMRQILVKLKHN 223


>AT3G51890.1 | Symbols:  | Clathrin light chain protein |
           chr3:19249686-19250890 REVERSE LENGTH=258
          Length = 258

 Score =  161 bits (407), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 101/146 (69%), Gaps = 4/146 (2%)

Query: 115 ILPDPTLMQ-EEGSARREWRRKNAIHLXXXXXXXXXMRNQIIKEAEDFKEAFYAKRKLNC 173
           ILP P+ M+ EEG A REWRR NA+ L         M  QI++ AE +K  FY+KR +  
Sbjct: 85  ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTI 144

Query: 174 ETTKTNNREREKIYLANQEKFHKEADKHYWKAIAEIIPREVPNIEKRRGKKEAENKPSVH 233
           E  K  NRE+EK +L NQEKF+ EADK+ WKAIAE+IPREVP IE R  KK+     ++ 
Sbjct: 145 ENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKKKT---ATIT 201

Query: 234 VIQGPKPGKPTDLSRMRQMILKLKQN 259
           VIQGPKPGKPTDLSRMRQ++ KLK N
Sbjct: 202 VIQGPKPGKPTDLSRMRQVLTKLKHN 227