Miyakogusa Predicted Gene

Lj3g3v2737550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2737550.1 Non Chatacterized Hit- tr|D8T2L7|D8T2L7_SELML
Putative uncharacterized protein OS=Selaginella
moelle,47.87,0.0000000000001,seg,NULL; 39S RIBOSOMAL PROTEIN L18,
MITOCHONDRIAL,NULL; Ribosomal_L18p,Ribosomal protein L18/L5;
Tr,CUFF.44563.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...   142   3e-35
AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    57   3e-09
AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    53   5e-08
AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    52   6e-08
AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    48   1e-06

>AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr5:9860584-9860928 FORWARD LENGTH=114
          Length = 114

 Score =  142 bits (359), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 81/100 (81%)

Query: 15  FLKPYVLRMHFTNKNVSAQVIHXXXXXXXXXXXXQEKALRSSLETSRDVAAAAKIGKVLA 74
           +LKPYVL+MHFTNK V AQVIH            QEKALR +++ +RDVAAA+KIGK+L 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 75  ERLLFKDIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114
           ERLL KDIPAV++ +K+EQ+YHGKVKAVIDS+REAGVKLL
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114


>AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:7055639-7056679 REVERSE LENGTH=187
          Length = 187

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 56/97 (57%)

Query: 15  FLKPYVLRMHFTNKNVSAQVIHXXXXXXXXXXXXQEKALRSSLETSRDVAAAAKIGKVLA 74
           +++P++L + F+ K + A+V+H              + +R+++ +  D  A   IGK++A
Sbjct: 87  YMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIA 146

Query: 75  ERLLFKDIPAVSVHLKREQKYHGKVKAVIDSLREAGV 111
           ER +  D+ AVS   ++ ++  GK+  VID+++E G+
Sbjct: 147 ERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183


>AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2838789-2840955 FORWARD LENGTH=234
          Length = 234

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%)

Query: 15  FLKPYVLRMHFTNKNVSAQVIHXXXXXXXXXXXXQEKALRSSLETSRDVAAAAKIGKVLA 74
           +++P+ L +  + + VSA + H              K +++ L +  D+ A   IG++L+
Sbjct: 131 YMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILS 190

Query: 75  ERLLFKDIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER    D+   S   + + K+ GK++AV+ SL + G+ +
Sbjct: 191 ERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 229


>AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2839855-2840955 FORWARD LENGTH=189
          Length = 189

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%)

Query: 15  FLKPYVLRMHFTNKNVSAQVIHXXXXXXXXXXXXQEKALRSSLETSRDVAAAAKIGKVLA 74
           +++P+ L +  + + VSA + H              K +++ L +  D+ A   IG++L+
Sbjct: 86  YMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILS 145

Query: 75  ERLLFKDIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER    D+   S   + + K+ GK++AV+ SL + G+ +
Sbjct: 146 ERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 184


>AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:16469167-16469568 REVERSE LENGTH=133
          Length = 133

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 12/111 (10%)

Query: 16  LKPYVLRMHFTNKNVSAQVIHXXXXXXXXXXXXQEKALRSSLETSR--DVAAAAKIGKVL 73
           LK YVLR+  + K ++A V+              E  +++SLE  R  +  AAA +G+VL
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 74  AERL---LFKDIPAVSVH--LKREQKYHG-----KVKAVIDSLREAGVKLL 114
           A RL     +D     +H  +K+E +  G     KV AVI+SLR  GV L+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114