Miyakogusa Predicted Gene
- Lj3g3v2576350.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2576350.1 Non Chatacterized Hit- tr|I1NFA1|I1NFA1_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,31.27,3e-17,DNA-binding pseudobarrel domain,DNA-binding
pseudobarrel domain; B3,B3 DNA binding domain; seg,NULL;,CUFF.44242.1
(487 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1... 63 5e-10
AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional... 60 2e-09
AT2G24680.2 | Symbols: | transcriptional factor B3 family prote... 52 1e-06
AT2G24680.1 | Symbols: | transcriptional factor B3 family prote... 51 2e-06
AT4G33280.1 | Symbols: | AP2/B3-like transcriptional factor fam... 51 2e-06
>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
chr1:18314596-18315460 REVERSE LENGTH=226
Length = 226
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 393 FTIILKNTHMNE---MKIPLGFIKKYVTDKVTSVVLRAKGRKWDAQLSYDPKDDSTAFSS 449
F ++L+ +++ M +P GF +KY++ + L+ ++W + Y K FS
Sbjct: 129 FRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCLY--KAGRAKFSQ 186
Query: 450 GWSEFVRECHLKEGDQCVFDLVDKENFVLEVKASR 484
GW EF E ++ EGD CVF+L+ +FVLEV A R
Sbjct: 187 GWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFR 221
>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
factor family protein | chr3:6549077-6551568 REVERSE
LENGTH=341
Length = 341
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 393 FTIILKNTHMNE---MKIPLGFIKKYVTDKVTSVVLRAKGRKWDAQLSYDPKDDSTAFSS 449
F ++L+ +++ M +P GF +KY++ + ++ ++W + Y K FS
Sbjct: 244 FRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCLY--KAGRAKFSQ 301
Query: 450 GWSEFVRECHLKEGDQCVFDLVDKENFVLEVKASRC 485
GW EF E +L EGD CVF+L+ +FVL+V A R
Sbjct: 302 GWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRV 337
>AT2G24680.2 | Symbols: | transcriptional factor B3 family protein
| chr2:10493467-10496733 REVERSE LENGTH=471
Length = 471
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 237 VSSSENVIIRCTMHRSYIERNTMSMPGRFVPAHLHKEEGNAILWVAEK---SWDVRFKLN 293
SSS+N + S + ++ + +P + + + I+ E+ SW + + N
Sbjct: 49 ASSSDNSCFVALVTASNLRKDALYLPQDLTSSVGLERKYREIVVTDERERRSWALDLRFN 108
Query: 294 QSSNQFSLTTGWKKFQEENTLKKGDKCVLTQMNSEKLSYSVEIERAKRASSPHLVQEAEK 353
+SS+ F ++ GW+ F +EN K G V KL + E S+ + +
Sbjct: 109 KSSDTFYISRGWRSFCDENGKKPGGVFVF------KLVGNRETPVLSFCSTESINDGTQG 162
Query: 354 RKQTRLQSNLAEGSGRGIAANVLDNDSEFPKM-----NSKRENQFTIILKNTHMNEMK-- 406
K + N ++ S+ +M S +N+F + L TH N +K
Sbjct: 163 HKNNKY--------------NCMELKSKKKRMRCRDSTSPSQNRF-MTLTLTHDNLIKSR 207
Query: 407 --IPLGFIKKYVTDKVTSVVLRAK-GRKWDAQLSYDPKDDSTAFSSGWSEFVRECHLKEG 463
+PL F + DK + L K GRKW+A L + GW EF LK G
Sbjct: 208 RYLPLSFTRDNGLDKPGMIFLLGKTGRKWEANLLREASGRIVLTGKGWKEFAMANGLKSG 267
Query: 464 DQCVFDLV 471
+ + +
Sbjct: 268 ELFTLEAI 275
>AT2G24680.1 | Symbols: | transcriptional factor B3 family protein
| chr2:10493887-10496733 REVERSE LENGTH=446
Length = 446
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 42/252 (16%)
Query: 237 VSSSENVIIRCTMHRSYIERNTMSMPGRFVPAHLHKEEGNAILWVAEK---SWDVRFKLN 293
SSS+N + S + ++ + +P + + + I+ E+ SW + + N
Sbjct: 49 ASSSDNSCFVALVTASNLRKDALYLPQDLTSSVGLERKYREIVVTDERERRSWALDLRFN 108
Query: 294 QSSNQFSLTTGWKKFQEENTLKKGDKCVLTQMNSEK---LSYSVEIERAKRASSPH---- 346
+SS+ F ++ GW+ F +EN K G V + + + LS+ E + H
Sbjct: 109 KSSDTFYISRGWRSFCDENGKKPGGVFVFKLVGNRETPVLSF-CSTESINDGTQGHKNNK 167
Query: 347 --LVQEAEKRKQTRLQSNLAEGSGRGIAANVLDNDSEFPKMNSKRENQFTIILKNTHMNE 404
++ K+K+ R + DS P +N+F + L TH N
Sbjct: 168 YNCMELKSKKKRMRCR------------------DSTSPS-----QNRF-MTLTLTHDNL 203
Query: 405 MK----IPLGFIKKYVTDKVTSVVLRAK-GRKWDAQLSYDPKDDSTAFSSGWSEFVRECH 459
+K +PL F + DK + L K GRKW+A L + GW EF
Sbjct: 204 IKSRRYLPLSFTRDNGLDKPGMIFLLGKTGRKWEANLLREASGRIVLTGKGWKEFAMANG 263
Query: 460 LKEGDQCVFDLV 471
LK G+ + +
Sbjct: 264 LKSGELFTLEAI 275
>AT4G33280.1 | Symbols: | AP2/B3-like transcriptional factor family
protein | chr4:16047357-16049310 REVERSE LENGTH=337
Length = 337
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 230 ISSADKAVSSSENVIIRCTMHRSYI-ERNTMSMPGRFVPAHLHKEEGNAILWVAEKSWDV 288
+S A +A+S ++ M RS++ + +++P ++ ++ ++ V + W++
Sbjct: 211 LSLAKRAISPDGFLVF---MKRSHVVSKCFLTIPYKWCVKNMLITRQEVVMQVDQTKWEM 267
Query: 289 RFKLNQSSNQFSLTTGWKKFQEENTLKKGDKCVLTQMNSEK--LSYSVEIERAKRA 342
+F + + ++TGWKKF ++N L++GD CV NSE L +V I R +
Sbjct: 268 KFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGEET 323