Miyakogusa Predicted Gene

Lj3g3v2518940.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2518940.2 Non Chatacterized Hit- tr|D7KQB8|D7KQB8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,34.16,0.000000003,no description,Homeodomain-like; PREDICTED:
SIMILAR TO SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPEN,CUFF.44125.2
         (436 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01060.3 | Symbols: LHY, LHY1 | Homeodomain-like superfamily ...   163   2e-40
AT1G01060.2 | Symbols: LHY, LHY1 | Homeodomain-like superfamily ...   163   2e-40
AT1G01060.1 | Symbols: LHY, LHY1 | Homeodomain-like superfamily ...   163   2e-40
AT1G01060.4 | Symbols: LHY, LHY1 | Homeodomain-like superfamily ...   163   2e-40
AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 | chr...   154   9e-38
AT5G37260.1 | Symbols: RVE2, CIR1 | Homeodomain-like superfamily...   122   5e-28
AT1G18330.1 | Symbols: EPR1, RVE7 | Homeodomain-like superfamily...   120   2e-27
AT1G18330.2 | Symbols: EPR1, RVE7 | Homeodomain-like superfamily...   119   3e-27
AT3G10113.1 | Symbols:  | Homeodomain-like superfamily protein |...   119   3e-27
AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily prote...   118   9e-27
AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |...   101   1e-21
AT3G09600.2 | Symbols:  | Homeodomain-like superfamily protein |...   100   1e-21
AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |...    99   8e-21
AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |...    99   8e-21
AT5G02840.2 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    94   1e-19
AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    94   1e-19
AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    94   1e-19
AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |...    94   1e-19
AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |...    94   2e-19
AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |...    93   4e-19
AT1G01060.5 | Symbols: LHY | Homeodomain-like superfamily protei...    70   3e-12

>AT1G01060.3 | Symbols: LHY, LHY1 | Homeodomain-like superfamily
           protein | chr1:33992-37061 REVERSE LENGTH=645
          Length = 645

 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 110/174 (63%), Gaps = 11/174 (6%)

Query: 5   DSSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRS 64
           ++S EE++ K RKPYTITKQRERWTE+EH RFLEAL+L+GRAWQRIEEHIGTK+AVQIRS
Sbjct: 4   NTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRS 63

Query: 65  HAQKFFTKLEKEALVKGVPIGQAIDIDIXXXXXXXXXXXXXXXX--XXAVTATLQSGEKD 122
           HAQKFFTKLEKEA VKG+P+ QA+DI+I                      +++  S  KD
Sbjct: 64  HAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKD 123

Query: 123 VKLNXXXXXXXXXXXXKLTLDLEKEPLPEKHNVDEGPTTVKENKDGDHLEVFTV 176
            KL             +  LDLEK P  EK       +T KEN+D +   V TV
Sbjct: 124 AKL---VSSASSSQLNQAFLDLEKMPFSEK------TSTGKENQDENCSGVSTV 168



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 13/127 (10%)

Query: 280 MQSNQNYPRHVTVQVFDGNVSTNTQNPSQDMRLRDSIFQPIGEVNGQPKVFTNSAASNTG 339
           + S QNYP H    + +GN++   QN    M  +D +F P+ E             +N  
Sbjct: 212 VHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMRE--------ETHGHANLQ 263

Query: 340 ESQSNTGQSSIHQSFLPYPPFTQHNQDDYQSFIHMSSTFSSLVVSNLLQNPXXXXXXXXX 399
            + ++   ++ HQ+F        H+QDDY+SF+ +SSTFS+L++S LLQNP         
Sbjct: 264 ATTASATTTASHQAFPAC-----HSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFA 318

Query: 400 XTYWPHA 406
            + WP+A
Sbjct: 319 ASVWPYA 325


>AT1G01060.2 | Symbols: LHY, LHY1 | Homeodomain-like superfamily
           protein | chr1:33992-37061 REVERSE LENGTH=645
          Length = 645

 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 110/174 (63%), Gaps = 11/174 (6%)

Query: 5   DSSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRS 64
           ++S EE++ K RKPYTITKQRERWTE+EH RFLEAL+L+GRAWQRIEEHIGTK+AVQIRS
Sbjct: 4   NTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRS 63

Query: 65  HAQKFFTKLEKEALVKGVPIGQAIDIDIXXXXXXXXXXXXXXXX--XXAVTATLQSGEKD 122
           HAQKFFTKLEKEA VKG+P+ QA+DI+I                      +++  S  KD
Sbjct: 64  HAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKD 123

Query: 123 VKLNXXXXXXXXXXXXKLTLDLEKEPLPEKHNVDEGPTTVKENKDGDHLEVFTV 176
            KL             +  LDLEK P  EK       +T KEN+D +   V TV
Sbjct: 124 AKL---VSSASSSQLNQAFLDLEKMPFSEK------TSTGKENQDENCSGVSTV 168



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 13/127 (10%)

Query: 280 MQSNQNYPRHVTVQVFDGNVSTNTQNPSQDMRLRDSIFQPIGEVNGQPKVFTNSAASNTG 339
           + S QNYP H    + +GN++   QN    M  +D +F P+ E             +N  
Sbjct: 212 VHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMRE--------ETHGHANLQ 263

Query: 340 ESQSNTGQSSIHQSFLPYPPFTQHNQDDYQSFIHMSSTFSSLVVSNLLQNPXXXXXXXXX 399
            + ++   ++ HQ+F        H+QDDY+SF+ +SSTFS+L++S LLQNP         
Sbjct: 264 ATTASATTTASHQAFPAC-----HSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFA 318

Query: 400 XTYWPHA 406
            + WP+A
Sbjct: 319 ASVWPYA 325


>AT1G01060.1 | Symbols: LHY, LHY1 | Homeodomain-like superfamily
           protein | chr1:33992-37061 REVERSE LENGTH=645
          Length = 645

 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 110/174 (63%), Gaps = 11/174 (6%)

Query: 5   DSSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRS 64
           ++S EE++ K RKPYTITKQRERWTE+EH RFLEAL+L+GRAWQRIEEHIGTK+AVQIRS
Sbjct: 4   NTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRS 63

Query: 65  HAQKFFTKLEKEALVKGVPIGQAIDIDIXXXXXXXXXXXXXXXX--XXAVTATLQSGEKD 122
           HAQKFFTKLEKEA VKG+P+ QA+DI+I                      +++  S  KD
Sbjct: 64  HAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKD 123

Query: 123 VKLNXXXXXXXXXXXXKLTLDLEKEPLPEKHNVDEGPTTVKENKDGDHLEVFTV 176
            KL             +  LDLEK P  EK       +T KEN+D +   V TV
Sbjct: 124 AKL---VSSASSSQLNQAFLDLEKMPFSEK------TSTGKENQDENCSGVSTV 168



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 13/127 (10%)

Query: 280 MQSNQNYPRHVTVQVFDGNVSTNTQNPSQDMRLRDSIFQPIGEVNGQPKVFTNSAASNTG 339
           + S QNYP H    + +GN++   QN    M  +D +F P+ E             +N  
Sbjct: 212 VHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMRE--------ETHGHANLQ 263

Query: 340 ESQSNTGQSSIHQSFLPYPPFTQHNQDDYQSFIHMSSTFSSLVVSNLLQNPXXXXXXXXX 399
            + ++   ++ HQ+F        H+QDDY+SF+ +SSTFS+L++S LLQNP         
Sbjct: 264 ATTASATTTASHQAFPAC-----HSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFA 318

Query: 400 XTYWPHA 406
            + WP+A
Sbjct: 319 ASVWPYA 325


>AT1G01060.4 | Symbols: LHY, LHY1 | Homeodomain-like superfamily
           protein | chr1:33992-37061 REVERSE LENGTH=644
          Length = 644

 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 110/174 (63%), Gaps = 11/174 (6%)

Query: 5   DSSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRS 64
           ++S EE++ K RKPYTITKQRERWTE+EH RFLEAL+L+GRAWQRIEEHIGTK+AVQIRS
Sbjct: 4   NTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRS 63

Query: 65  HAQKFFTKLEKEALVKGVPIGQAIDIDIXXXXXXXXXXXXXXXX--XXAVTATLQSGEKD 122
           HAQKFFTKLEKEA VKG+P+ QA+DI+I                      +++  S  KD
Sbjct: 64  HAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKD 123

Query: 123 VKLNXXXXXXXXXXXXKLTLDLEKEPLPEKHNVDEGPTTVKENKDGDHLEVFTV 176
            KL             +  LDLEK P  EK       +T KEN+D +   V TV
Sbjct: 124 AKL---VSSASSSQLNQAFLDLEKMPFSEK------TSTGKENQDENCSGVSTV 168



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 13/127 (10%)

Query: 280 MQSNQNYPRHVTVQVFDGNVSTNTQNPSQDMRLRDSIFQPIGEVNGQPKVFTNSAASNTG 339
           + S QNYP H    + +GN++   QN    M  +D +F P+ E             +N  
Sbjct: 211 VHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMRE--------ETHGHANLQ 262

Query: 340 ESQSNTGQSSIHQSFLPYPPFTQHNQDDYQSFIHMSSTFSSLVVSNLLQNPXXXXXXXXX 399
            + ++   ++ HQ+F        H+QDDY+SF+ +SSTFS+L++S LLQNP         
Sbjct: 263 ATTASATTTASHQAFPAC-----HSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFA 317

Query: 400 XTYWPHA 406
            + WP+A
Sbjct: 318 ASVWPYA 324


>AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 |
          chr2:19246005-19248717 FORWARD LENGTH=608
          Length = 608

 Score =  154 bits (390), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 82/88 (93%)

Query: 5  DSSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRS 64
          +SS E++++KTRKPYTITKQRERWTEEEHNRF+EAL+L+GRAWQ+IEEH+ TK+AVQIRS
Sbjct: 4  NSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRS 63

Query: 65 HAQKFFTKLEKEALVKGVPIGQAIDIDI 92
          HAQKFF+K+EKEA  KGV +GQA+DI I
Sbjct: 64 HAQKFFSKVEKEAEAKGVAMGQALDIAI 91


>AT5G37260.1 | Symbols: RVE2, CIR1 | Homeodomain-like superfamily
          protein | chr5:14751344-14752972 REVERSE LENGTH=287
          Length = 287

 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 66/75 (88%)

Query: 2  DAADSSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQ 61
          D   SSS+   +KTRKPYTITKQRE+WTE EH +F+EALKL+GRAW+RIEEH+GTK+AVQ
Sbjct: 13 DELISSSDAFYLKTRKPYTITKQREKWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQ 72

Query: 62 IRSHAQKFFTKLEKE 76
          IRSHAQKFFTK+ ++
Sbjct: 73 IRSHAQKFFTKVARD 87


>AT1G18330.1 | Symbols: EPR1, RVE7 | Homeodomain-like superfamily
           protein | chr1:6306196-6307640 REVERSE LENGTH=346
          Length = 346

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 64/68 (94%)

Query: 10  EVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSHAQKF 69
           E +VK RKPYT+TKQRE+W+EEEH+RFLEA+KL+GR W++I+EHIGTK+AVQIRSHAQKF
Sbjct: 35  ENVVKVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKF 94

Query: 70  FTKLEKEA 77
           F+K+ +EA
Sbjct: 95  FSKMAQEA 102


>AT1G18330.2 | Symbols: EPR1, RVE7 | Homeodomain-like superfamily
           protein | chr1:6306196-6307718 REVERSE LENGTH=372
          Length = 372

 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 64/68 (94%)

Query: 10  EVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSHAQKF 69
           E +VK RKPYT+TKQRE+W+EEEH+RFLEA+KL+GR W++I+EHIGTK+AVQIRSHAQKF
Sbjct: 61  ENVVKVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKF 120

Query: 70  FTKLEKEA 77
           F+K+ +EA
Sbjct: 121 FSKMAQEA 128


>AT3G10113.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:3118043-3119391 REVERSE LENGTH=336
          Length = 336

 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 64/68 (94%)

Query: 10  EVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSHAQKF 69
           E +VK RKPYT+TKQRE+W+EEEH+RFLEA+KL+GR W++I+EHIGTK+AVQIRSHAQKF
Sbjct: 50  ENVVKVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKF 109

Query: 70  FTKLEKEA 77
           F+K+ +EA
Sbjct: 110 FSKMAQEA 117


>AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily protein
           | chr5:5690435-5692435 REVERSE LENGTH=387
          Length = 387

 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 61/64 (95%)

Query: 14  KTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSHAQKFFTKL 73
           K RKPYTITK+RERWT+EEH +F+EALKL+GRAW+RIEEH+G+K+AVQIRSHAQKFF+K+
Sbjct: 44  KVRKPYTITKERERWTDEEHKKFVEALKLYGRAWRRIEEHVGSKTAVQIRSHAQKFFSKV 103

Query: 74  EKEA 77
            +EA
Sbjct: 104 AREA 107


>AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:2946459-2948270 FORWARD LENGTH=298
          Length = 298

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 61/81 (75%)

Query: 3   AADSSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQI 62
           + D+ +E    K RKPYTITK RE WTEEEH++FLEAL+L  R W++IE+ +G+K+ +QI
Sbjct: 21  STDAVAEGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQI 80

Query: 63  RSHAQKFFTKLEKEALVKGVP 83
           RSHAQK+F K++K   +  VP
Sbjct: 81  RSHAQKYFLKVQKNGTLAHVP 101


>AT3G09600.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:2946459-2948200 FORWARD LENGTH=282
          Length = 282

 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 61/81 (75%)

Query: 3   AADSSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQI 62
           + D+ +E    K RKPYTITK RE WTEEEH++FLEAL+L  R W++IE+ +G+K+ +QI
Sbjct: 21  STDAVAEGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQI 80

Query: 63  RSHAQKFFTKLEKEALVKGVP 83
           RSHAQK+F K++K   +  VP
Sbjct: 81  RSHAQKYFLKVQKNGTLAHVP 101


>AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:21359423-21362037 REVERSE LENGTH=331
          Length = 331

 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)

Query: 6   SSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSH 65
           SS E++  K RKPYTITK RE WTE EH++FLEAL+L  R W++IE  IG+K+ +QIRSH
Sbjct: 53  SSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSH 112

Query: 66  AQKFFTKLEKEALVKGVP 83
           AQK+F K++K    + +P
Sbjct: 113 AQKYFLKVQKSGTGEHLP 130


>AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:21359423-21362037 REVERSE LENGTH=330
          Length = 330

 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)

Query: 6   SSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSH 65
           SS E++  K RKPYTITK RE WTE EH++FLEAL+L  R W++IE  IG+K+ +QIRSH
Sbjct: 53  SSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSH 112

Query: 66  AQKFFTKLEKEALVKGVP 83
           AQK+F K++K    + +P
Sbjct: 113 AQKYFLKVQKSGTGEHLP 130


>AT5G02840.2 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651212
           FORWARD LENGTH=293
          Length = 293

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 54/70 (77%)

Query: 14  KTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSHAQKFFTKL 73
           K RK YTITK RE WTE EH++FLEAL+L  R W++IE+ +G+K+ +QIRSHAQK+F K+
Sbjct: 37  KVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 96

Query: 74  EKEALVKGVP 83
           +K   +  VP
Sbjct: 97  QKNGTLAHVP 106


>AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651212
           FORWARD LENGTH=293
          Length = 293

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 54/70 (77%)

Query: 14  KTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSHAQKFFTKL 73
           K RK YTITK RE WTE EH++FLEAL+L  R W++IE+ +G+K+ +QIRSHAQK+F K+
Sbjct: 37  KVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 96

Query: 74  EKEALVKGVP 83
           +K   +  VP
Sbjct: 97  QKNGTLAHVP 106


>AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651204
           FORWARD LENGTH=283
          Length = 283

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 54/70 (77%)

Query: 14  KTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSHAQKFFTKL 73
           K RK YTITK RE WTE EH++FLEAL+L  R W++IE+ +G+K+ +QIRSHAQK+F K+
Sbjct: 37  KVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 96

Query: 74  EKEALVKGVP 83
           +K   +  VP
Sbjct: 97  QKNGTLAHVP 106


>AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:535288-536854 FORWARD LENGTH=302
          Length = 302

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 57/78 (73%)

Query: 6   SSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSH 65
           S SE+   K RKPYTI K RE WT++EH++FLEAL L  R W++IE  +G+K+ VQIRSH
Sbjct: 40  SFSEDPTTKIRKPYTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSH 99

Query: 66  AQKFFTKLEKEALVKGVP 83
           AQK+F K++K    + +P
Sbjct: 100 AQKYFLKVQKSGANEHLP 117


>AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:535288-536854 FORWARD LENGTH=303
          Length = 303

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 57/78 (73%)

Query: 6   SSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSH 65
           S SE+   K RKPYTI K RE WT++EH++FLEAL L  R W++IE  +G+K+ VQIRSH
Sbjct: 40  SFSEDPTTKIRKPYTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSH 99

Query: 66  AQKFFTKLEKEALVKGVP 83
           AQK+F K++K    + +P
Sbjct: 100 AQKYFLKVQKSGANEHLP 117


>AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr1:190596-192139 FORWARD LENGTH=287
          Length = 287

 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 56/75 (74%)

Query: 9   EEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSHAQK 68
           E+   K RKPYTITK RE WTE+EH++FLEAL L  R W++I+  +G+K+ +QIRSHAQK
Sbjct: 45  EDPTKKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQK 104

Query: 69  FFTKLEKEALVKGVP 83
           +F K++K    + +P
Sbjct: 105 YFLKVQKNGTKEHLP 119


>AT1G01060.5 | Symbols: LHY | Homeodomain-like superfamily protein |
           chr1:33992-36836 REVERSE LENGTH=643
          Length = 643

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 13/127 (10%)

Query: 280 MQSNQNYPRHVTVQVFDGNVSTNTQNPSQDMRLRDSIFQPIGEVNGQPKVFTNSAASNTG 339
           + S QNYP H    + +GN++   QN    M  +D +F P+ E             +N  
Sbjct: 210 VHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMRE--------ETHGHANLQ 261

Query: 340 ESQSNTGQSSIHQSFLPYPPFTQHNQDDYQSFIHMSSTFSSLVVSNLLQNPXXXXXXXXX 399
            + ++   ++ HQ+F        H+QDDY+SF+ +SSTFS+L++S LLQNP         
Sbjct: 262 ATTASATTTASHQAFPAC-----HSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFA 316

Query: 400 XTYWPHA 406
            + WP+A
Sbjct: 317 ASVWPYA 323