Miyakogusa Predicted Gene

Lj3g3v2317900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2317900.1 Non Chatacterized Hit- tr|E9CGW1|E9CGW1_CAPO3
Putative uncharacterized protein OS=Capsaspora owczarz,41.67,5e-19,no
description,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
assembly factor 3; DUF498,NADH deh,CUFF.43837.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44525.1 | Symbols:  | Protein of unknown function (DUF498/DU...   253   5e-68
AT3G60150.1 | Symbols:  | Protein of unknown function (DUF498/DU...   243   6e-65

>AT2G44525.1 | Symbols:  | Protein of unknown function
           (DUF498/DUF598) | chr2:18382130-18383320 FORWARD
           LENGTH=170
          Length = 170

 Score =  253 bits (645), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/162 (73%), Positives = 140/162 (86%), Gaps = 2/162 (1%)

Query: 7   LPNLIRTLRNEQPLKPQQNHALPSLRRAFSLYDQINVIDKLPDDQLRFQGYSDTGFTVNR 66
           LP LI+++R E P     N  LPSLRRAFSLYDQIN+ID +P+DQLRFQ ++DT FTVN 
Sbjct: 11  LPKLIQSMRKEVP--KHSNPVLPSLRRAFSLYDQINLIDNVPEDQLRFQEFNDTSFTVNG 68

Query: 67  VEYEGSLLCVGNLLLSWKPNKFSEITADSLSLFQIVRPIPEILILGCGRNIQPVDPELRK 126
           V+YEGSLLCVGNLL+SW P KFSEIT DSLS+FQ VRPIPE+LI+GCGR+I PV PE+R+
Sbjct: 69  VKYEGSLLCVGNLLMSWSPRKFSEITTDSLSIFQTVRPIPELLIVGCGRDIHPVTPEVRQ 128

Query: 127 FIRSTGMKLEAVDSRNAASTYNILNEEGRIVAAALLPHGVSS 168
           F++S GMKLE VDSRNAASTYNILNEEGR+VAAALLP+GV+S
Sbjct: 129 FVKSLGMKLETVDSRNAASTYNILNEEGRVVAAALLPYGVTS 170


>AT3G60150.1 | Symbols:  | Protein of unknown function
           (DUF498/DUF598) | chr3:22222152-22223350 FORWARD
           LENGTH=170
          Length = 170

 Score =  243 bits (619), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 116/172 (67%), Positives = 145/172 (84%), Gaps = 6/172 (3%)

Query: 1   MSIKQR----LPNLIRTLRNEQPLKPQQNHALPSLRRAFSLYDQINVIDKLPDDQLRFQG 56
           M+++Q+    LP LI+++RNE  +  Q +  LPSLRRAFSLYDQIN+ID +P+DQLRFQ 
Sbjct: 1   MAVRQKAMATLPKLIQSMRNE--VTKQPSLVLPSLRRAFSLYDQINLIDNVPEDQLRFQE 58

Query: 57  YSDTGFTVNRVEYEGSLLCVGNLLLSWKPNKFSEITADSLSLFQIVRPIPEILILGCGRN 116
           + +T FTVN V+YEGSLLCVGNLL+SW P  FS+IT DSLS+FQ VRPIPE+LI+GCGR 
Sbjct: 59  FDETSFTVNGVKYEGSLLCVGNLLMSWSPRYFSDITTDSLSIFQTVRPIPELLIVGCGRY 118

Query: 117 IQPVDPELRKFIRSTGMKLEAVDSRNAASTYNILNEEGRIVAAALLPHGVSS 168
             P++P++R+F++S GMKLE VDSRNAASTYNILNEEGRIVAAALLP+GV+S
Sbjct: 119 NHPLNPQVRQFVKSIGMKLETVDSRNAASTYNILNEEGRIVAAALLPYGVTS 170