Miyakogusa Predicted Gene

Lj3g3v2200290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2200290.1 CUFF.43686.1
         (374 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 | ch...   152   3e-37
AT3G15790.1 | Symbols: MBD11, ATMBD11 | methyl-CPG-binding domai...   140   1e-33
AT1G15340.2 | Symbols: MBD10 | methyl-CPG-binding domain 10 | ch...    95   1e-19

>AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 |
           chr1:5275895-5277474 REVERSE LENGTH=384
          Length = 384

 Score =  152 bits (385), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 85/100 (85%), Gaps = 4/100 (4%)

Query: 1   MENDPQSEQVLSVELPAPPAWKKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLK 60
           MEN   +++++S+ELPAP +WKKLF+PK+ GTPRK +EI F+APTGEEISS+KQLEQYLK
Sbjct: 1   MEN---TDELVSIELPAPASWKKLFYPKRAGTPRK-TEIVFVAPTGEEISSRKQLEQYLK 56

Query: 61  AHPGNPAISEFDWGTGETPRRSARISVKAKSTPPPAETDP 100
           AHPGNP ISEF+W TGETPRRS+RIS K K+T P  + +P
Sbjct: 57  AHPGNPVISEFEWTTGETPRRSSRISQKVKATTPTPDKEP 96


>AT3G15790.1 | Symbols: MBD11, ATMBD11 | methyl-CPG-binding domain
           11 | chr3:5343209-5344386 FORWARD LENGTH=254
          Length = 254

 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 81/94 (86%), Gaps = 2/94 (2%)

Query: 8   EQVLSVELPAPPAWKKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPA 67
           E+V+SVELPAP +WKKLF+P KVG+ +K +E+ F+APTGEEIS++KQLEQYLK+HPGNPA
Sbjct: 5   EEVVSVELPAPSSWKKLFYPNKVGSVKK-TEVVFVAPTGEEISNRKQLEQYLKSHPGNPA 63

Query: 68  ISEFDWGTGETPRRSARISVKAKSTPPPAETDPP 101
           I+EFDW T  TPRRSARIS K K+TP P + +PP
Sbjct: 64  IAEFDWTTSGTPRRSARISEKTKATPSP-DKEPP 96


>AT1G15340.2 | Symbols: MBD10 | methyl-CPG-binding domain 10 |
          chr1:5275895-5277474 REVERSE LENGTH=332
          Length = 332

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 53/60 (88%), Gaps = 4/60 (6%)

Query: 1  MENDPQSEQVLSVELPAPPAWKKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLK 60
          MEN   +++++S+ELPAP +WKKLF+PK+ GTPRK +EI F+APTGEEISS+KQLEQYLK
Sbjct: 1  MEN---TDELVSIELPAPASWKKLFYPKRAGTPRK-TEIVFVAPTGEEISSRKQLEQYLK 56