Miyakogusa Predicted Gene

Lj3g3v1907630.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1907630.1 Non Chatacterized Hit- tr|A5AXN9|A5AXN9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,72.22,3e-18,DDE_4,NULL,CUFF.43290.1
         (105 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28730.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    55   8e-09
AT1G43722.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    52   7e-08
AT5G28950.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    49   1e-06
AT5G41980.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Putative h...    47   2e-06

>AT5G28730.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins
           in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3;
           Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes
           - 0 (source: NCBI BLink). | chr5:10779003-10780218
           FORWARD LENGTH=296
          Length = 296

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 1   MAVCDWDMCFIFALPGWEGIAHDARVFENALTTASMNFPHPPPGKYYLVDAGYPTPVAIL 60
           +A+CD DM F +   G  G  HDARV   A++   + F  PP  KYYLVD+GY      L
Sbjct: 143 LAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPL-FHVPPDSKYYLVDSGYANKRGYL 201


>AT1G43722.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins
           in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222;
           Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes
           - 10 (source: NCBI BLink). | chr1:16496403-16497377
           FORWARD LENGTH=324
          Length = 324

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 1   MAVCDWDMCFIFALPGWEGIAHDARVFENALTTASMNFPHPPPGKYYLVDAGYPTPVAIL 60
           MA+CD  M F +   G  G  +D  V + A  + S  FP PP  KYYLVD+GYP    +L
Sbjct: 209 MAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDS-EFPLPPSEKYYLVDSGYPNKQGLL 267


>AT5G28950.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins
          in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31;
          Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes
          - 0 (source: NCBI BLink). | chr5:10992505-10993435
          FORWARD LENGTH=148
          Length = 148

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 1  MAVCDWDMCFIFALPGWEGIAHDARVFENALTTASMNFPHP 41
          +A C++D+ F++ L GWEG AHD++V  +ALT  S   P P
Sbjct: 58 LAACNFDVEFMYVLSGWEGSAHDSKVLNDALTRNSNRLPVP 98


>AT5G41980.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Putative
           harbinger transposase-derived nuclease
           (InterPro:IPR006912); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G43722.1); Has 1807
           Blast hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:16793765-16794889 FORWARD LENGTH=374
          Length = 374

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 1   MAVCDWDMCFIFALPGWEGIAHDARVFENALTTASMNFPHPPPGKYYLVDAGYP 54
           +A   +D+ F + L GWEG A D +V   ALT    N    P GKYY+VD  YP
Sbjct: 176 LAASSFDLRFNYVLAGWEGSASDQQVLNAALT--RRNKLQVPQGKYYIVDNKYP 227