Miyakogusa Predicted Gene

Lj3g3v1663540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1663540.1 Non Chatacterized Hit- tr|I1NLB1|I1NLB1_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,38.07,5e-19,HLH,Helix-loop-helix domain; no
description,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-bindi,CUFF.43072.1
         (256 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   107   1e-23
AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic helix-loop-h...   105   2e-23
AT2G41130.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    90   1e-18
AT3G56770.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    83   2e-16
AT2G40200.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    80   1e-15
AT4G38070.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    61   7e-10
AT4G37850.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    48   5e-06
AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-bind...    48   6e-06

>AT1G68810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:25861289-25862882 FORWARD
           LENGTH=368
          Length = 368

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 106/179 (59%), Gaps = 7/179 (3%)

Query: 53  AKLERKGVSNERSIDALKNHSXXXXXXXXXINAHLDTLRNVIPGAMKMDKASLLGEVLRH 112
            K+  + + + +++ A K+HS         IN HL  LR+++P   K DKASLL EV++H
Sbjct: 159 GKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQH 218

Query: 113 LKDLKRNAAQDCEGLMIPKDNDEINV---EEQEGGLNGFPYSIRASLCCEYKPGLLSNIR 169
           +K+LKR  +   E  ++P ++DE+ V   EE+E G   F   I+ASLCCE +  LL ++ 
Sbjct: 219 VKELKRETSVISETNLVPTESDELTVAFTEEEETGDGRF--VIKASLCCEDRSDLLPDMI 276

Query: 170 QELDSLHLMIIKADIATLGSRMKNVLVIISCEERNFEDAEYRQFLAGSVHQALRSVLNR 228
           + L ++ L  +KA+I T+G R+KNVL +   E     +    ++  G++ +AL++V+ +
Sbjct: 277 KTLKAMRLKTLKAEITTVGGRVKNVLFVTGEESS--GEEVEEEYCIGTIEEALKAVMEK 333


>AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic
           helix-loop-helix 32 | chr3:9369598-9371096 FORWARD
           LENGTH=344
          Length = 344

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 20/179 (11%)

Query: 46  GELVEAPAKLERKGVSNERSIDALKNHSXXXXXXXXXINAHLDTLRNVIPGAMKMDKASL 105
           GE++    KL  + V + +++ A K+HS         IN HL  LR+++P   K DKASL
Sbjct: 113 GEIM---GKLSAQEVMDAKALAASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASL 169

Query: 106 LGEVLRHLKDLKRNAAQDCEGLMIPKDNDEINVE----EQEGGLNGFPYSIRASLCCEYK 161
           L EV++H+K+LKR  +Q  +   +P + D++ V+    ++EG L      IRAS CC+ +
Sbjct: 170 LAEVIQHMKELKRQTSQITDTYQVPTECDDLTVDSSYNDEEGNL-----VIRASFCCQDR 224

Query: 162 PGLLSNIRQELDSLHLMIIKADIATLGSRMKNVLVIISCEERNFEDAE----YRQFLAG 216
             L+ ++   L SL L  +KA+IAT+G R+KN+L +     R ++D E    YR+   G
Sbjct: 225 TDLMHDVINALKSLRLRTLKAEIATVGGRVKNILFL----SREYDDEEDHDSYRRNFDG 279


>AT2G41130.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:17143360-17144686 FORWARD
           LENGTH=253
          Length = 253

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 97/171 (56%), Gaps = 8/171 (4%)

Query: 60  VSNERSIDALKNHSXXXXXXXXXINAHLDTLRNVIPGAMKMDKASLLGEVLRHLKDLKRN 119
           ++ +R++ AL+NH          IN+HL+ LRNV+    K DKA+LL +V++ +++LK+ 
Sbjct: 59  MAQDRALAALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQ 118

Query: 120 A--AQDCEGLMIPKDNDEINVEEQEGGLNGFPYSIRASLCCEYKPGLLSNIRQELDSLHL 177
                D +  ++P + DEI+V       N      +ASLCCE +  LL ++ + L SL++
Sbjct: 119 TLETSDSDQTLLPSETDEISVLHFGDYSNDGHIIFKASLCCEDRSDLLPDLMEILKSLNM 178

Query: 178 MIIKADIATLGSRMKNVLVIISCEERNFEDAEYRQFLAGSVHQALRSVLNR 228
             ++A++ T+G R ++VLV+ +  ++     E   FL      AL+S+L R
Sbjct: 179 KTLRAEMVTIGGRTRSVLVVAA--DKEMHGVESVHFL----QNALKSLLER 223


>AT3G56770.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:21029202-21030618 REVERSE
           LENGTH=230
          Length = 230

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 9/171 (5%)

Query: 60  VSNERSIDALKNHSXXXXXXXXXINAHLDTLRNVIPGAMKMDKASLLGEVLRHLKDLKRN 119
           V  ++++ +L+NH          IN+HL+ LR ++    K DK++LL +V++ +K+LK+ 
Sbjct: 37  VYEDKALASLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQ 96

Query: 120 AAQDCEGLMIPKDNDEINVEEQEGGLNGFPYSI--RASLCCEYKPGLLSNIRQELDSLHL 177
             +  +   IP + DEI+V   E    G    I  + S CCE +P LL ++ + L SL +
Sbjct: 97  TLEITDE-TIPSETDEISVLNIEDCSRGDDRRIIFKVSFCCEDRPELLKDLMETLKSLQM 155

Query: 178 MIIKADIATLGSRMKNVLVIISCEERNFEDAEYRQFLAGSVHQALRSVLNR 228
             + AD+ T+G R +NVLV+ + +E +    +   FL      AL+S+L R
Sbjct: 156 ETLFADMTTVGGRTRNVLVVAADKEHH--GVQSVNFL----QNALKSLLER 200


>AT2G40200.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:16791098-16792027 FORWARD
           LENGTH=254
          Length = 254

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 10/151 (6%)

Query: 83  INAHLDTLRNVIPGAMKMDKASLLGEVLRHLKDLKRNAAQDCEGLMIPKDNDEINVEEQ- 141
           IN+HL  LR ++P + K+DKA+LL  V+  +K+LK+ AA+      +P + DE+ V+ + 
Sbjct: 78  INSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAESPIFQDLPTEADEVTVQPET 137

Query: 142 ----EGGLNGFPYSIRASLCCEYKPGLLSNIRQELDSLHLMIIKADIATLGSRMKNVLVI 197
               E   N   +  +AS CCE +P  +S I + L  L L  I+A+I ++G RM+   ++
Sbjct: 138 ISDFESNTNTIIF--KASFCCEDQPEAISEIIRVLTKLQLETIQAEIISVGGRMRINFIL 195

Query: 198 ISCEERNFEDAEYRQFLAGSVHQALRSVLNR 228
              ++ N  +       A ++ Q+L S LNR
Sbjct: 196 ---KDSNCNETTNIAASAKALKQSLCSALNR 223


>AT4G38070.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
            superfamily protein | chr4:17876535-17882569 FORWARD
            LENGTH=1513
          Length = 1513

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)

Query: 45   RGELVEAP-AKLERKGVSNERSIDALKNHSXXXXXXXXXINAHLDTLRNVIPGAMKMDKA 103
            RG  V  P +K E K V       A K HS         IN+   TLR ++P  +K DKA
Sbjct: 1332 RGFSVTKPKSKTESKEV-------AAKKHSDAERRRRLRINSQFATLRTILPNLVKQDKA 1384

Query: 104  SLLGEVLRHLKDLKRNAAQDCEGLMIPKDNDEINVEEQEGGLNGFPYSIRASLCCEYKPG 163
            S+LGE +R+  +LK+   QD       +DN  ++        N      R    C  + G
Sbjct: 1385 SVLGETVRYFNELKK-MVQDIPTTPSLEDNLRLD------HCNNNRDLARVVFSCSDREG 1437

Query: 164  LLSNIRQELDSLHLMIIKADIATLGSRMKNVLVI 197
            L+S + + + ++    ++A+I T+G R K  L +
Sbjct: 1438 LMSEVAESMKAVKAKAVRAEIMTVGGRTKCALFV 1471


>AT4G37850.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:17796362-17797647 REVERSE
           LENGTH=328
          Length = 328

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 33/166 (19%)

Query: 90  LRNVIPGAMKMDKASLLGEVLRHLKDLKRNAAQ--------DCEGLMIPK-------DND 134
           L  ++PG  KMDKAS+LG+ L+H+K L+    +          E +++ K       DN+
Sbjct: 171 LSALVPGLKKMDKASVLGDALKHIKYLQERVGELEEQKKERRLESMVLVKKSKLILDDNN 230

Query: 135 EINVEEQEGGLNGF---PYSIRAS-------LCCEYKPGLLSNIRQELDSLHLMIIKADI 184
           +      E G +        +R S       + CE + G L+ I  E++ LH++I  + +
Sbjct: 231 QSFSSSCEDGFSDLDLPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSV 290

Query: 185 ATLGSRMKNVLVIISCEERNFEDAEYRQFLAGSVHQALRSVLNRFC 230
              G  +   + II+ +E +F+           V ++LRS L+ F 
Sbjct: 291 LNFGPTLD--ITIIAKKESDFD------MTLMDVVKSLRSALSNFI 328


>AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-binding
           family protein | chr4:9933702-9935471 REVERSE LENGTH=589
          Length = 589

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 29/206 (14%)

Query: 38  SLVLDRERGELVEAPAKLERK-GVSNERSIDALKNHSXXXXXXXXXINAHLDTLRNVIPG 96
           S+  + E   +V  P K  RK G       +   NH          +N    +LR V+P 
Sbjct: 382 SVAKEAESNRVVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPN 441

Query: 97  AMKMDKASLLGEVLRHLKDLK---RNAAQDCEGLMIPKDNDEINVEEQEGGLNGFPYSIR 153
             KMDKASLLG+ + ++ +LK   + A  D E L       +I+V  +E G      S++
Sbjct: 442 VSKMDKASLLGDAISYISELKSKLQKAESDKEELQ-----KQIDVMNKEAG--NAKSSVK 494

Query: 154 ASLCCEYKPGLLSNIRQELDSLHLMIIKADIATLGSRMKNVLVIISCEERNFEDAEYRQF 213
              C   +  +L  I  E+D   + II  D           ++ I C +RN   A++ + 
Sbjct: 495 DRKCLNQESSVL--IEMEVD---VKIIGWD----------AMIRIQCSKRNHPGAKFMEA 539

Query: 214 LAG---SVHQALRSVLNRFCVSQEVI 236
           L      V+ A  SV+N   + Q  +
Sbjct: 540 LKELDLEVNHASLSVVNDLMIQQATV 565