Miyakogusa Predicted Gene

Lj3g3v1603830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1603830.1 CUFF.42832.1
         (251 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01935.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   303   7e-83

>AT4G01935.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast; Has
           37 Blast hits to 37 proteins in 17 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30;
           Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
           | chr4:841102-842228 FORWARD LENGTH=256
          Length = 256

 Score =  303 bits (776), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 147/207 (71%), Positives = 174/207 (84%), Gaps = 3/207 (1%)

Query: 39  SQGQQSLRTT--SW-SQVSLSLFGTGFLFGPLIDGLHSRVNLVVYKSGSIDIGPLHTNIW 95
           SQ +QS  +T  SW   VSLSLFG+GF+ GPL+DG+HSRV+LVVY++G+  IGPLHTNIW
Sbjct: 34  SQRKQSKTSTGKSWIVPVSLSLFGSGFVLGPLLDGIHSRVDLVVYQNGAFQIGPLHTNIW 93

Query: 96  VPFLLGLFYCSVGLLQLYLDERVLNKVQEGSFAKTIVSLILLVLFIALSAELYKAGIAKN 155
           VPFLLGLFYC+VGLLQL LDE        GS  KT++SL+ L+ F+ LSAE+YKAG++ N
Sbjct: 94  VPFLLGLFYCTVGLLQLLLDETTSASPPRGSLDKTVISLLALMFFLELSAEMYKAGVSDN 153

Query: 156 TEAYILFAAAEFMWFLLDRTWPGFTLACLVGLACPLAEIPIMKFFHLWYYPQANIELFGQ 215
            EAYILFA AEF+WF LDRTW  FT+A L+G+ACPLAEIPIM+FFHLWYYP+ANIE+FGQ
Sbjct: 154 IEAYILFALAEFIWFSLDRTWICFTIATLLGVACPLAEIPIMQFFHLWYYPEANIEIFGQ 213

Query: 216 GLVTWTLTCYFVYTPFLINLSRWLRTV 242
           GLVTWT TCYFVYTPFLINL+RWLRTV
Sbjct: 214 GLVTWTTTCYFVYTPFLINLARWLRTV 240