Miyakogusa Predicted Gene

Lj3g3v1543500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1543500.1 tr|A9SV53|A9SV53_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,39.29,0.00000002,coiled-coil,NULL; seg,NULL,CUFF.42787.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51100.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   111   1e-25

>AT1G51100.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast,
           chloroplast stroma; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to
           26 proteins in 9 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:18934342-18934977 FORWARD LENGTH=211
          Length = 211

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 64/87 (73%)

Query: 1   MGKEFGSAELLAKVGXXXXXXXXXXXXXXXXXGKVEERMVTELFRVLKLMEMDLAMVKAA 60
           M +EFGS ELLAK G                 GKVEERMVTELFRVLKLMEMDLAMVKA+
Sbjct: 125 MAREFGSKELLAKAGEIVAERAREEAEVLRDEGKVEERMVTELFRVLKLMEMDLAMVKAS 184

Query: 61  VKDETLGERLQQAKARGRQAILVAYSF 87
           VKDETL +R++QA+AR RQAILVA SF
Sbjct: 185 VKDETLSQRIEQARARCRQAILVANSF 211