Miyakogusa Predicted Gene

Lj3g3v1541420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1541420.1 Non Chatacterized Hit- tr|Q8S9G5|Q8S9G5_BRANA
Putative PCF11 protein OS=Brassica napus GN=pcf11
PE=2,41.73,2e-19,PRE-MRNA CLEAVAGE COMPLEX
II,NULL,NODE_51176_length_374_cov_76.981285.path2.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2...   213   2e-56
AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II | chr1:24...    95   1e-20
AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II | chr5:17...    93   5e-20
AT2G36480.2 | Symbols:  | ENTH/VHS family protein | chr2:1530256...    63   6e-11
AT2G36480.3 | Symbols:  | ENTH/VHS family protein | chr2:1530256...    63   6e-11
AT2G36480.1 | Symbols:  | ENTH/VHS family protein | chr2:1530311...    63   6e-11

>AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 |
           chr4:2472083-2475417 FORWARD LENGTH=808
          Length = 808

 Score =  213 bits (543), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 94/124 (75%), Positives = 108/124 (87%)

Query: 1   MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDEELA 60
           MDWHVTKNRMSKN KQ PSRKWFVS  MWLSGAEALG E+ PGFLP +   EKKDDE++A
Sbjct: 670 MDWHVTKNRMSKNHKQNPSRKWFVSASMWLSGAEALGAEAVPGFLPTEPTTEKKDDEDMA 729

Query: 61  VPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCR 120
           VPADEDQ +CALCGEPF++FYSDETEEWMY+GAVY+NAP  +T  +D+SQLGPI+HAKCR
Sbjct: 730 VPADEDQTSCALCGEPFEDFYSDETEEWMYKGAVYMNAPEESTTDMDKSQLGPIVHAKCR 789

Query: 121 SESS 124
            ES+
Sbjct: 790 PESN 793


>AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II |
           chr1:24811262-24812512 REVERSE LENGTH=416
          Length = 416

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 69/129 (53%), Gaps = 19/129 (14%)

Query: 1   MDWHVTKNRMSKN-----RKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKD 55
           MDWHV KNR  K      ++ K SR W  S  +WL  A    T     F      ++ KD
Sbjct: 273 MDWHVRKNRSVKTTTRLGQQPKKSRGWLASASLWLCAATGGETVEVASFGGEMQKKKGKD 332

Query: 56  DE--ELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGP 113
           +E  +L VPADEDQ  CALC EPF+EF+S E ++WMY+ AVYL            ++ G 
Sbjct: 333 EEPKQLMVPADEDQKNCALCVEPFEEFFSHEDDDWMYKDAVYL------------TKNGR 380

Query: 114 IIHAKCRSE 122
           I+H KC  E
Sbjct: 381 IVHVKCMPE 389


>AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II |
           chr5:17522653-17523885 FORWARD LENGTH=410
          Length = 410

 Score = 92.8 bits (229), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 68/130 (52%), Gaps = 20/130 (15%)

Query: 1   MDWHVTKNRMSKN-----RKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKD 55
           MDWHV KNR  K      ++ K SR W  S  +WL      GT     F   +  ++ + 
Sbjct: 266 MDWHVRKNRSVKTTTRLGQQPKKSRGWLASASLWLCAPTGGGTVEVASFGGGEMQKKNEK 325

Query: 56  DE---ELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLG 112
           D+   +  VPADEDQ  CALC EPF+EF+S E ++WMY+ AVYL            ++ G
Sbjct: 326 DQVQKQHMVPADEDQKNCALCVEPFEEFFSHEADDWMYKDAVYL------------TKNG 373

Query: 113 PIIHAKCRSE 122
            I+H KC  E
Sbjct: 374 RIVHVKCMPE 383


>AT2G36480.2 | Symbols:  | ENTH/VHS family protein |
           chr2:15302567-15306274 REVERSE LENGTH=844
          Length = 844

 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 7/67 (10%)

Query: 60  AVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYL-NAPNGTTAGLDRSQLGPIIHAK 118
           AV ADE Q  C LCGE F++++S E  +WM++GA YL N P  + A       GPI+H  
Sbjct: 755 AVAADETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS------GPIVHTG 808

Query: 119 CRSESSV 125
           C + SS+
Sbjct: 809 CLTTSSL 815


>AT2G36480.3 | Symbols:  | ENTH/VHS family protein |
           chr2:15302567-15306274 REVERSE LENGTH=886
          Length = 886

 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 7/67 (10%)

Query: 60  AVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYL-NAPNGTTAGLDRSQLGPIIHAK 118
           AV ADE Q  C LCGE F++++S E  +WM++GA YL N P  + A       GPI+H  
Sbjct: 755 AVAADETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS------GPIVHTG 808

Query: 119 CRSESSV 125
           C + SS+
Sbjct: 809 CLTTSSL 815


>AT2G36480.1 | Symbols:  | ENTH/VHS family protein |
           chr2:15303114-15306274 REVERSE LENGTH=830
          Length = 830

 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 60  AVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKC 119
           AV ADE Q  C LCGE F++++S E  +WM++GA YL  P   +        GPI+H  C
Sbjct: 755 AVAADETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEA-----SGPIVHTGC 809

Query: 120 RSESSV 125
            + SS+
Sbjct: 810 LTTSSL 815