Miyakogusa Predicted Gene

Lj3g3v1507280.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1507280.2 Non Chatacterized Hit- tr|I3SL79|I3SL79_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,89.34,0,Ribosomal protein L1,Ribosomal protein L1, superfamily;
Ribosomal_L1,Ribosomal protein L1; seg,NULL;,CUFF.42713.2
         (278 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42710.1 | Symbols:  | Ribosomal protein L1p/L10e family | ch...   283   1e-76
AT3G63490.1 | Symbols:  | Ribosomal protein L1p/L10e family | ch...   120   8e-28
AT3G63490.2 | Symbols:  | Ribosomal protein L1p/L10e family | ch...    72   4e-13

>AT2G42710.1 | Symbols:  | Ribosomal protein L1p/L10e family |
           chr2:17782352-17784830 FORWARD LENGTH=415
          Length = 415

 Score =  283 bits (724), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 143/276 (51%), Positives = 193/276 (69%), Gaps = 4/276 (1%)

Query: 1   MEMERRRIEAEDQLRARMVRA--VEDEKMKVPFPLLIRPKQKE-KPPVLDLMEAIRQVKA 57
           ME ER+RIE E++ R R +RA  VE++   +P P L++P+ K  K P+ DLMEAIR++K 
Sbjct: 140 MERERKRIELENRARRRFLRANAVEEDTSSLPLPTLLKPELKHGKKPIFDLMEAIREIKG 199

Query: 58  NAKAKFDETIEAHIRLGIESKRTELAVRGTVILPHGAPKXXXXXXXXXXXXXXXXXXXXX 117
           NAKAKFDET+EAH+RLGIE  R+EL VRGT+ LPH   K                     
Sbjct: 200 NAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKKDVKVAFFAEGADAEDAKAAGA 259

Query: 118 DIVGGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPDKKLGTLTNDIS 177
           D+VGG ELIEEI   + K+  D+C +TP M P + KI++ L    LMP+ K G++T D++
Sbjct: 260 DVVGGLELIEEILK-SGKIDFDRCLATPKMMPRVYKISRILNNHGLMPNPKQGSVTKDVT 318

Query: 178 GQLKELRQGRLEFKMESKSILHAGVGKVSYKDESLRENIGAFMNAVLLAKPAGLKKTSKY 237
             +K+ + G  +F+M+  SILH  +GK+S+ +E+LREN+GAFMNA+LLAKPAGLKKTSKY
Sbjct: 319 KAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKPAGLKKTSKY 378

Query: 238 AGYVLSVHICSTMGPGFPVSIQSLSKAADNYKKMHV 273
           AGYV + H+CSTMG G+PVSIQSLS+AAD + K+ +
Sbjct: 379 AGYVNAFHLCSTMGKGYPVSIQSLSRAADLHTKLQL 414


>AT3G63490.1 | Symbols:  | Ribosomal protein L1p/L10e family |
           chr3:23444269-23446020 FORWARD LENGTH=346
          Length = 346

 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 7/215 (3%)

Query: 47  DLMEAIRQVKANAKAKFDETIEAHIRLGIESKRTELAVRGTVILPHGAPKXXXXXXXXXX 106
           D+  AI  +K  A  +F E++EAH RL I+ K  +  +R TV LP G  +          
Sbjct: 130 DVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQG 189

Query: 107 XXXXXXXXXXXDIVGGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPD 166
                      DIVG  +LIE+I  G   ++ DK  ++P M   +  + + L  R LMP+
Sbjct: 190 EKVDEAKSAGADIVGSDDLIEQIKGGF--MEFDKLIASPDMMVKVAGLGKILGPRGLMPN 247

Query: 167 KKLGTLTNDISGQLKELRQGRLEFKMESKSILHAGVGKVSYKDESLRENIGAFMNAVLLA 226
            K GT+T +I   ++E ++G++EF+ +   I+H   GKV++ +E L  N  A + +V   
Sbjct: 248 PKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETN 307

Query: 227 KPAGLKKTSKYAGYVLSVHICSTMGPGFPVSIQSL 261
           KP G K       Y  S HICS+MGP   ++I+ +
Sbjct: 308 KPKGAKGV-----YWKSAHICSSMGPSIKLNIREM 337


>AT3G63490.2 | Symbols:  | Ribosomal protein L1p/L10e family |
           chr3:23444269-23445777 FORWARD LENGTH=291
          Length = 291

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 5/159 (3%)

Query: 47  DLMEAIRQVKANAKAKFDETIEAHIRLGIESKRTELAVRGTVILPHGAPKXXXXXXXXXX 106
           D+  AI  +K  A  +F E++EAH RL I+ K  +  +R TV LP G  +          
Sbjct: 130 DVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQG 189

Query: 107 XXXXXXXXXXXDIVGGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPD 166
                      DIVG  +LIE+I  G   ++ DK  ++P M   +  + + L  R LMP+
Sbjct: 190 EKVDEAKSAGADIVGSDDLIEQIKGGF--MEFDKLIASPDMMVKVAGLGKILGPRGLMPN 247

Query: 167 KKLGTLTNDISGQLKELRQGRLEFKMESKSILHAGVGKV 205
            K GT+T +I    +  R+G+L  +     +    +GK+
Sbjct: 248 PKAGTVTANIP---QSSRRGKLNSEQTKLGLFTFHLGKL 283