Miyakogusa Predicted Gene

Lj3g3v1507280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1507280.1 tr|B6TB66|B6TB66_MAIZE 50S ribosomal protein L1
OS=Zea mays PE=2 SV=1,41.1,2e-18,no description,Ribosomal protein L1,
2-layer alpha/beta-sandwich; seg,NULL; Ribosomal protein
L1,Rib,CUFF.42713.1
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42710.1 | Symbols:  | Ribosomal protein L1p/L10e family | ch...   149   1e-36

>AT2G42710.1 | Symbols:  | Ribosomal protein L1p/L10e family |
           chr2:17782352-17784830 FORWARD LENGTH=415
          Length = 415

 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 100/150 (66%), Gaps = 8/150 (5%)

Query: 92  PQQRALTREDIRYVKDGPSITPVSYPMRVAPLPEDMVPGQKN-----DXXXXXXXXIEAE 146
           P+    TRE+IRYVKD PSI PVSY  RVAPLPED V G+       +        IE E
Sbjct: 91  PESANWTREEIRYVKDSPSINPVSYAQRVAPLPEDRVAGENEGDRTPEEMERERKRIELE 150

Query: 147 DQLRARMVRA--VEDEKMKVPFPLLIRPKQKE-KPPVLDLMEAIRQVKANAKAKFDETIE 203
           ++ R R +RA  VE++   +P P L++P+ K  K P+ DLMEAIR++K NAKAKFDET+E
Sbjct: 151 NRARRRFLRANAVEEDTSSLPLPTLLKPELKHGKKPIFDLMEAIREIKGNAKAKFDETLE 210

Query: 204 AHIRLGIESKRTELAVRGTVILPHGAPKVI 233
           AH+RLGIE  R+EL VRGT+ LPH   K +
Sbjct: 211 AHVRLGIEKGRSELIVRGTLALPHSVKKDV 240