Miyakogusa Predicted Gene

Lj3g3v1403900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1403900.1 Non Chatacterized Hit- tr|A5BG18|A5BG18_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,51.27,4.00001e-40,Ribonuclease H-like,Ribonuclease H-like domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; DUF,CUFF.42534.1
         (158 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17450.1 | Symbols:  | hAT dimerisation domain-containing pro...   108   2e-24
AT3G22220.2 | Symbols:  | hAT transposon superfamily | chr3:7839...   104   3e-23
AT3G22220.1 | Symbols:  | hAT transposon superfamily | chr3:7839...   104   3e-23
AT4G15020.2 | Symbols:  | hAT transposon superfamily | chr4:8575...    96   1e-20
AT4G15020.1 | Symbols:  | hAT transposon superfamily | chr4:8575...    96   1e-20
AT1G43260.1 | Symbols:  | hAT transposon superfamily protein | c...    79   1e-15
AT1G79740.1 | Symbols:  | hAT transposon superfamily | chr1:3000...    75   2e-14
AT1G36095.1 | Symbols:  | DNA binding | chr1:13491370-13492725 R...    60   4e-10
AT5G31412.1 | Symbols:  | hAT transposon superfamily protein | c...    50   8e-07

>AT3G17450.1 | Symbols:  | hAT dimerisation domain-containing
           protein | chr3:5972793-5975684 REVERSE LENGTH=877
          Length = 877

 Score =  108 bits (269), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 2/159 (1%)

Query: 1   MNFLVYSSKGTVFLNSIDVSDAATRDTDFYFQLLDKIXXXXXXXXXXXXXTDNEAALKAV 60
           ++FLV   +G  F +SID +D    D    F+ LDK+             T N A  ++ 
Sbjct: 391 ISFLVSCPRGVYFHSSIDATDI-VEDALSLFKCLDKLVDDIGEENVVQVITQNTAIFRSA 449

Query: 61  GHKLMDKRPHLYWFACAAHCLDLCLEDIGKKKNVQAVLNDAKTVTNFIYNHIWTVSLMK- 119
           G  L +KR +LYW  CA HC +L LED  K + V   L  A+ +T FIYN  W ++LMK 
Sbjct: 450 GKLLEEKRKNLYWTPCAIHCTELVLEDFSKLEFVSECLEKAQRITRFIYNQTWLLNLMKN 509

Query: 120 QFTNGREIVRPGITRFATQCLQLQAILKQKDGLIKMFDS 158
           +FT G +++RP + R A+    LQ+++  K  L  +F S
Sbjct: 510 EFTQGLDLLRPAVMRHASGFTTLQSLMDHKASLRGLFQS 548


>AT3G22220.2 | Symbols:  | hAT transposon superfamily |
           chr3:7839808-7842358 REVERSE LENGTH=761
          Length = 761

 Score =  104 bits (259), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 81/158 (51%), Gaps = 1/158 (0%)

Query: 1   MNFLVYSSKGTVFLNSIDVSDAATRDTDFYFQLLDKIXXXXXXXXXXXXXTDNEAALKAV 60
           + FLVY  +  VFL S+D S+    +   Y +LL ++             T  E    A 
Sbjct: 279 LKFLVYCPEKVVFLKSVDASEILDSEDKLY-ELLKEVVEEIGDTNVVQVITKCEDHYAAA 337

Query: 61  GHKLMDKRPHLYWFACAAHCLDLCLEDIGKKKNVQAVLNDAKTVTNFIYNHIWTVSLMKQ 120
           G KLMD  P LYW  CAAHC+D  LE+ GK   ++ ++  A+TVT  IYNH   ++LM++
Sbjct: 338 GKKLMDVYPSLYWVPCAAHCIDKMLEEFGKMDWIREIIEQARTVTRIIYNHSGVLNLMRK 397

Query: 121 FTNGREIVRPGITRFATQCLQLQAILKQKDGLIKMFDS 158
           FT G +IV+P  T  AT    +  I   K  L  M  S
Sbjct: 398 FTFGNDIVQPVCTSSATNFTTMGRIADLKPYLQAMVTS 435


>AT3G22220.1 | Symbols:  | hAT transposon superfamily |
           chr3:7839808-7842358 REVERSE LENGTH=761
          Length = 761

 Score =  104 bits (259), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 81/158 (51%), Gaps = 1/158 (0%)

Query: 1   MNFLVYSSKGTVFLNSIDVSDAATRDTDFYFQLLDKIXXXXXXXXXXXXXTDNEAALKAV 60
           + FLVY  +  VFL S+D S+    +   Y +LL ++             T  E    A 
Sbjct: 279 LKFLVYCPEKVVFLKSVDASEILDSEDKLY-ELLKEVVEEIGDTNVVQVITKCEDHYAAA 337

Query: 61  GHKLMDKRPHLYWFACAAHCLDLCLEDIGKKKNVQAVLNDAKTVTNFIYNHIWTVSLMKQ 120
           G KLMD  P LYW  CAAHC+D  LE+ GK   ++ ++  A+TVT  IYNH   ++LM++
Sbjct: 338 GKKLMDVYPSLYWVPCAAHCIDKMLEEFGKMDWIREIIEQARTVTRIIYNHSGVLNLMRK 397

Query: 121 FTNGREIVRPGITRFATQCLQLQAILKQKDGLIKMFDS 158
           FT G +IV+P  T  AT    +  I   K  L  M  S
Sbjct: 398 FTFGNDIVQPVCTSSATNFTTMGRIADLKPYLQAMVTS 435


>AT4G15020.2 | Symbols:  | hAT transposon superfamily |
           chr4:8575806-8578372 FORWARD LENGTH=768
          Length = 768

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 1/158 (0%)

Query: 1   MNFLVYSSKGTVFLNSIDVSDAATRDTDFYFQLLDKIXXXXXXXXXXXXXTDNEAALKAV 60
           +NFLVY  +  VFL S+D S+  +   D  F+LL ++             T  +      
Sbjct: 283 LNFLVYCPEKVVFLKSVDASEVLS-SADKLFELLSELVEEVGSTNVVQVITKCDDYYVDA 341

Query: 61  GHKLMDKRPHLYWFACAAHCLDLCLEDIGKKKNVQAVLNDAKTVTNFIYNHIWTVSLMKQ 120
           G +LM   P LYW  CAAHC+D  LE+ GK   +   +  A+ +T F+YNH   ++LM +
Sbjct: 342 GKRLMLVYPSLYWVPCAAHCIDQMLEEFGKLGWISETIEQAQAITRFVYNHSGVLNLMWK 401

Query: 121 FTNGREIVRPGITRFATQCLQLQAILKQKDGLIKMFDS 158
           FT+G +I+ P  +  AT    L  I + K  L  M  S
Sbjct: 402 FTSGNDILLPAFSSSATNFATLGRIAELKSNLQAMVTS 439


>AT4G15020.1 | Symbols:  | hAT transposon superfamily |
           chr4:8575806-8578372 FORWARD LENGTH=768
          Length = 768

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 1/158 (0%)

Query: 1   MNFLVYSSKGTVFLNSIDVSDAATRDTDFYFQLLDKIXXXXXXXXXXXXXTDNEAALKAV 60
           +NFLVY  +  VFL S+D S+  +   D  F+LL ++             T  +      
Sbjct: 283 LNFLVYCPEKVVFLKSVDASEVLS-SADKLFELLSELVEEVGSTNVVQVITKCDDYYVDA 341

Query: 61  GHKLMDKRPHLYWFACAAHCLDLCLEDIGKKKNVQAVLNDAKTVTNFIYNHIWTVSLMKQ 120
           G +LM   P LYW  CAAHC+D  LE+ GK   +   +  A+ +T F+YNH   ++LM +
Sbjct: 342 GKRLMLVYPSLYWVPCAAHCIDQMLEEFGKLGWISETIEQAQAITRFVYNHSGVLNLMWK 401

Query: 121 FTNGREIVRPGITRFATQCLQLQAILKQKDGLIKMFDS 158
           FT+G +I+ P  +  AT    L  I + K  L  M  S
Sbjct: 402 FTSGNDILLPAFSSSATNFATLGRIAELKSNLQAMVTS 439


>AT1G43260.1 | Symbols:  | hAT transposon superfamily protein |
           chr1:16318253-16319234 FORWARD LENGTH=294
          Length = 294

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 1   MNFLVYSSKGTVFLNSIDVSDAATRDTDFYFQLLDKIXXXXXXXXXXXXXTDNEAALKAV 60
           MN  +   +GT+FL+S D  D  +   ++ F  +++                N A     
Sbjct: 124 MNLCINCKEGTMFLSSKDCFDD-SHTGEYIFAYVNEYCIKNLGGDHVVQVVTNNATNNIT 182

Query: 61  GHKLMDK-RPHLYWFACAAHCLDLCLEDIGKKKNVQAVLNDAKTVTNFIYNHIWTVSLMK 119
             KL+ + RP ++W  CA H ++L +E I K      ++  AK  T FIY H  T+S+M+
Sbjct: 183 AAKLLKEVRPTIFWTFCATHTINLMVEGISKLAMSDEIVKMAKAFTIFIYAHHQTLSMMR 242

Query: 120 QFTNGREIVRPGITRFATQCLQLQAILKQKDGL 152
            FT  R+IVRPGI  FA+    L++++++++ L
Sbjct: 243 SFTKRRDIVRPGIIGFASAFRTLKSLVEKEENL 275


>AT1G79740.1 | Symbols:  | hAT transposon superfamily |
           chr1:30004367-30006715 REVERSE LENGTH=651
          Length = 651

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 1/157 (0%)

Query: 1   MNFLVYSSKGTVFLNSIDVSDAATRDTDFYFQLLDKIXXXXXXXXXXXXXTDNEAALKAV 60
           +NF V S     F  S+D S +  +++     L D +              DN      +
Sbjct: 194 INFSVSSPSRIFFHKSVDAS-SYFKNSKCLADLFDSVIQDIGQEHIVQIIMDNSFCYTGI 252

Query: 61  GHKLMDKRPHLYWFACAAHCLDLCLEDIGKKKNVQAVLNDAKTVTNFIYNHIWTVSLMKQ 120
            + L+     ++   CA+ CL++ LE+  K   V   ++ A+ ++ F+YN+   + L+++
Sbjct: 253 SNHLLQNYATIFVSPCASQCLNIILEEFSKVDWVNQCISQAQVISKFVYNNSPVLDLLRK 312

Query: 121 FTNGREIVRPGITRFATQCLQLQAILKQKDGLIKMFD 157
            T G++I+R G+TR  +  L LQ+++KQK  L  MF+
Sbjct: 313 LTGGQDIIRSGVTRSVSNFLSLQSMMKQKARLKHMFN 349


>AT1G36095.1 | Symbols:  | DNA binding | chr1:13491370-13492725
           REVERSE LENGTH=301
          Length = 301

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%)

Query: 25  RDTDFYFQLLDKIXXXXXXXXXXXXXTDNEAALKAVGHKLMDKRPHLYWFACAAHCLDLC 84
           +D +  +  LD +              DN +         M  RPHLYW  CAAHC+ L 
Sbjct: 137 KDANMLYDHLDLMVDEVGEANVVKVVIDNASNYVKASQLSMANRPHLYWTPCAAHCIYLM 196

Query: 85  LEDIGKKKNVQAVLNDAKTVTNFIYNHIWTVSLMKQF 121
           LEDIGK   V+ V+       ++IY H   V++M++ 
Sbjct: 197 LEDIGKISEVKTVITQCIFKNDYIYGHTSLVNMMRKI 233


>AT5G31412.1 | Symbols:  | hAT transposon superfamily protein |
           chr5:11541463-11543768 REVERSE LENGTH=433
          Length = 433

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 1   MNFLVYSSKGTVFLNSIDVSDAATRDTDFY-FQLLDKIXXXXXXXXXXXXXTDNEAALKA 59
           MN  V S  G  FL+S D S      T  Y F+ +D+              TDN      
Sbjct: 150 MNLCVNSKGGKCFLSSKDAS--TNSHTGLYIFEYVDRCIADVGAKNVVQVVTDNALNNVT 207

Query: 60  VGHKLMDKRPHLYWFACAAHCLDLCLEDIGK 90
               L +KRP+++W  C AH +DL LE I K
Sbjct: 208 AAKMLKEKRPNIFWTGCVAHTVDLMLEAISK 238