Miyakogusa Predicted Gene

Lj3g3v0630330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0630330.1 Non Chatacterized Hit- tr|B7FHB1|B7FHB1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,66.15,0.0000000000001, ,79404_g.1
         (56 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60150.1 | Symbols:  | Protein of unknown function (DUF498/DU...    66   6e-12
AT2G44525.1 | Symbols:  | Protein of unknown function (DUF498/DU...    65   1e-11

>AT3G60150.1 | Symbols:  | Protein of unknown function
          (DUF498/DUF598) | chr3:22222152-22223350 FORWARD
          LENGTH=170
          Length = 170

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 46/59 (77%), Gaps = 6/59 (10%)

Query: 1  MSIKQR----LPNLIRTLRNEQPLKPQQNHALPSLRRAFSLYDQINVIDKLPDDQLRFQ 55
          M+++Q+    LP LI+++RNE  +  Q +  LPSLRRAFSLYDQIN+ID +P+DQLRFQ
Sbjct: 1  MAVRQKAMATLPKLIQSMRNE--VTKQPSLVLPSLRRAFSLYDQINLIDNVPEDQLRFQ 57


>AT2G44525.1 | Symbols:  | Protein of unknown function
          (DUF498/DUF598) | chr2:18382130-18383320 FORWARD
          LENGTH=170
          Length = 170

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 38/49 (77%), Gaps = 2/49 (4%)

Query: 7  LPNLIRTLRNEQPLKPQQNHALPSLRRAFSLYDQINVIDKLPDDQLRFQ 55
          LP LI+++R E P     N  LPSLRRAFSLYDQIN+ID +P+DQLRFQ
Sbjct: 11 LPKLIQSMRKEVP--KHSNPVLPSLRRAFSLYDQINLIDNVPEDQLRFQ 57