Miyakogusa Predicted Gene

Lj2g3v3337770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3337770.1 Non Chatacterized Hit- tr|J3NCC2|J3NCC2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB12G1,34.44,4e-17,FAS1 domain,FAS1 domain; no description,FAS1
domain; seg,NULL; FAS1,FAS1 domain; Fasciclin,FAS1 doma,77893_g.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26730.1 | Symbols:  | Fasciclin-like arabinogalactan family ...   115   1e-26
AT5G16920.1 | Symbols:  | Fasciclin-like arabinogalactan family ...    75   2e-14

>AT5G26730.1 | Symbols:  | Fasciclin-like arabinogalactan family
           protein | chr5:9300422-9301990 FORWARD LENGTH=268
          Length = 268

 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 1   MSDMRSRSYYGFVILLKILNSQPNSLQNNDLTFLMPSDEQLSQFSITPDELHDFLLSHSI 60
           M+DMR +SY GFVILL+ LN   N  +N D+TFLMPSD  +S   ITP+ L  F+L H+I
Sbjct: 122 MTDMRRQSYNGFVILLRFLN-DTNYFRNTDITFLMPSDNDISHADITPESLETFILKHTI 180

Query: 61  PTXXXXXXXXXXXXGXXXXXXXXXXXXXXTNSGRSGLFVNNARIVTPNVCQTSSIRCHGI 120
           P                            T SG SG++VNNARIVTPNVCQ S I CHGI
Sbjct: 181 PAWLMINHMLHFPNRTLVPCSFSDRMFTITKSGGSGIYVNNARIVTPNVCQNSRISCHGI 240

Query: 121 SAALTFGSNVPS 132
           S  ++F  N  S
Sbjct: 241 SDVISFNQNYVS 252


>AT5G16920.1 | Symbols:  | Fasciclin-like arabinogalactan family
           protein | chr5:5567084-5567854 FORWARD LENGTH=256
          Length = 256

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 1   MSDMRSRSYYGFVILLKILNS-QPNSLQNNDLTFLMPSDEQLSQFSIT--PDELHDFLLS 57
           + +M   +Y+ FV+L+ +L S  P  L N  +TFLMP D+ LS  +I    D + +FLL 
Sbjct: 40  IEEMEKANYFSFVMLINMLPSVNPRFLAN--VTFLMPKDKTLSTSNIINQQDSVTEFLLR 97

Query: 58  HSIPTXXXXXXXXXXXXGXXXXXXXXXXXXXXTNSGRSGLFVNNARIVTPNVCQTSSIRC 117
           HSIP+            G              +N GRS  F+NN +I++ N+C   SI+C
Sbjct: 98  HSIPSSLLFEHLNLIPNGSIVPSSLPHYTLEISNGGRSNYFLNNVKIISRNICSLGSIKC 157

Query: 118 HGISAALTFGSNV 130
           HGI   L   S V
Sbjct: 158 HGIDGILQSPSTV 170