Miyakogusa Predicted Gene

Lj2g3v1718710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1718710.1 tr|A0FK50|A0FK50_CHLRE Chloroplast Rat1
OS=Chlamydomonas reinhardtii GN=RAT1 PE=4
SV=1,38.84,3e-19,UNCHARACTERIZED,Coiled-coil domain-containing protein
90; UNCHARACTERIZED,NULL; coiled-coil,NULL; DU,CUFF.37723.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16460.1 | Symbols:  | Protein of unknown function (DUF1640) ...   229   3e-61
AT3G51090.1 | Symbols:  | Protein of unknown function (DUF1640) ...   220   2e-58
AT2G16460.2 | Symbols:  | Protein of unknown function (DUF1640) ...   122   8e-29
AT2G35090.1 | Symbols:  | Protein of unknown function (DUF1640) ...    49   8e-07
AT2G35070.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    46   7e-06

>AT2G16460.1 | Symbols:  | Protein of unknown function (DUF1640) |
           chr2:7133704-7135483 REVERSE LENGTH=230
          Length = 230

 Score =  229 bits (585), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/129 (84%), Positives = 122/129 (94%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQ+ EM+Q++NLSKFK+EV+SSQ HHF++LQ ETEKLR DIEKMRSELRYEIDKVTAGQR
Sbjct: 102 MQKIEMIQDSNLSKFKSEVKSSQEHHFTVLQRETEKLRGDIEKMRSELRYEIDKVTAGQR 161

Query: 61  LDLNLERGRIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAV 120
           LDLNLERGRIR+ELANQN ET NLTNKLDREIHALRA LEA+KY+VIKYCIGTLVSISAV
Sbjct: 162 LDLNLERGRIRDELANQNTETTNLTNKLDREIHALRAQLEASKYEVIKYCIGTLVSISAV 221

Query: 121 GLAVLRILM 129
           GLAVLRI++
Sbjct: 222 GLAVLRIMI 230


>AT3G51090.1 | Symbols:  | Protein of unknown function (DUF1640) |
           chr3:18978192-18979853 REVERSE LENGTH=298
          Length = 298

 Score =  220 bits (561), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 119/129 (92%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQ+ EM QE+NLSKFK+E+ SS  HHFSLLQHE EKLRNDIE++RS++R+EIDKVTAGQR
Sbjct: 170 MQKAEMTQESNLSKFKSEINSSLDHHFSLLQHENEKLRNDIERIRSDIRHEIDKVTAGQR 229

Query: 61  LDLNLERGRIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAV 120
           LDLNLE+GRIR+EL NQN ET+NLTNKLDREIH LRA LEAAKY+VIKYCIGTLVSISAV
Sbjct: 230 LDLNLEKGRIRDELQNQNGETSNLTNKLDREIHTLRAQLEAAKYEVIKYCIGTLVSISAV 289

Query: 121 GLAVLRILM 129
           GLAVLRI+M
Sbjct: 290 GLAVLRIVM 298


>AT2G16460.2 | Symbols:  | Protein of unknown function (DUF1640) |
           chr2:7133808-7135483 REVERSE LENGTH=173
          Length = 173

 Score =  122 bits (305), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 65/70 (92%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQ+ EM+Q++NLSKFK+EV+SSQ HHF++LQ ETEKLR DIEKMRSELRYEIDKVTAGQR
Sbjct: 102 MQKIEMIQDSNLSKFKSEVKSSQEHHFTVLQRETEKLRGDIEKMRSELRYEIDKVTAGQR 161

Query: 61  LDLNLERGRI 70
           LDLNLERG+ 
Sbjct: 162 LDLNLERGKF 171


>AT2G35090.1 | Symbols:  | Protein of unknown function (DUF1640) |
           chr2:14792187-14793030 FORWARD LENGTH=158
          Length = 158

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 22/121 (18%)

Query: 9   EANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQRLDLNLERG 68
           E+ + K KA++  S+ +  + +  E  K+R DI K+R++    I  + A +R D ++   
Sbjct: 59  ESVVEKVKADIAKSEEYQSTSVAEEVRKMRADINKVRAD----IATMQAEKRCDHDIH-- 112

Query: 69  RIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAVGLAVLRIL 128
                            NK++   + L+A  E  KY+ +KY   TLV+++AVG ++L ++
Sbjct: 113 ----------------VNKVEMGFNELKAEFETTKYEAVKYAAYTLVAVAAVGSSMLFVM 156

Query: 129 M 129
           +
Sbjct: 157 I 157


>AT2G35070.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: pollen tube
           development, pollen development; LOCATED IN:
           mitochondrion; BEST Arabidopsis thaliana protein match
           is: Protein of unknown function (DUF1640)
           (TAIR:AT2G35090.1); Has 62 Blast hits to 62 proteins in
           11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:14783518-14784508 FORWARD
           LENGTH=158
          Length = 158

 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 22/117 (18%)

Query: 9   EANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQRLDLNLERG 68
           E+ + K KA++  S+ +  + +  E  K+R DIEKMR++    I  + A +R D      
Sbjct: 59  ESVMGKVKADIAKSEEYKSTRVAEEFRKMRADIEKMRAD----IATIQAEERCD------ 108

Query: 69  RIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAVGLAVL 125
                        +N  +K+++  + L+   +A KY ++KY I TL+ ++A    +L
Sbjct: 109 ------------HDNHIHKVEQGFNELKDEFDATKYKIVKYAIYTLIPVAAAETGML 153