Miyakogusa Predicted Gene

Lj2g3v1549610.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1549610.1 tr|I3RZX6|I3RZX6_LOTJA ATP-dependent Clp protease
proteolytic subunit OS=Lotus japonicus PE=2
SV=1,100,0,CLPPROTEASEP,ClpP; CLP_protease,ClpP/TepA;
ClpP/crotonase,NULL; ATP-DEPENDENT CLP PROTEASE PROTEOLYT,CUFF.37397.1
         (158 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:18...   289   6e-79
AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded C...   140   4e-34
AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic ...   135   1e-32
AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit ...   125   2e-29
AT1G11750.1 | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease prot...   124   2e-29
AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP prote...   117   2e-27
AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 | chr4:9...   107   3e-24
ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | ch...    97   4e-21
AT1G09130.3 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    91   3e-19
AT1G09130.2 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    91   3e-19
AT1G09130.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    91   3e-19
AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease proteo...    91   4e-19
AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteo...    79   9e-16

>AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 |
           chr5:18396351-18397586 FORWARD LENGTH=292
          Length = 292

 Score =  289 bits (739), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 141/158 (89%), Positives = 148/158 (93%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 60
           MAIYD VQLVRADVSTIALGIAASTASIILG GTKGKRFAMPNTRIMIHQPLGGASGQAI
Sbjct: 135 MAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAI 194

Query: 61  DVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDKES 120
           DVEIQAKEVMHNKNNVT II+G T R+FEQV KDIDRDRYMSPIEAVEYG+IDGVID +S
Sbjct: 195 DVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVIDGDS 254

Query: 121 IIPLEPVPERVRSTLNYEEISKDPRKFLTPEIPDDEIY 158
           IIPLEPVP+RV+  +NYEEISKDP KFLTPEIPDDEIY
Sbjct: 255 IIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 292


>AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded CLP
           protease 5 | chr1:538000-539805 FORWARD LENGTH=298
          Length = 298

 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 89/116 (76%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 60
           MAI+D ++ +R DVST+ +G+AAS  + +L  GTKGKR+++PN+RIMIHQPLGGA G   
Sbjct: 170 MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQT 229

Query: 61  DVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 116
           D++IQA E++H+K N+   ++  TG++ E++ +D DRD +MS  EA EYG+IDGVI
Sbjct: 230 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285


>AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic
           subunit 3 | chr1:24863995-24865646 REVERSE LENGTH=309
          Length = 309

 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 87/117 (74%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 60
           M IYDA++  +ADVST+ LG+AAS  + +L  G+KGKR+ MPN+++MIHQPLG A G+A 
Sbjct: 141 MGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKAT 200

Query: 61  DVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 117
           ++ I+ +E+M++K  + +I S  TG+   +++ D DRD +++P EA EYG+ID VID
Sbjct: 201 EMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257


>AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit 6 |
           chr1:3967609-3969535 FORWARD LENGTH=289
          Length = 289

 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 81/119 (68%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 60
           +AIYD +  ++  V T+A G+AAS  +++L GG KG R+AMPNTR+MIHQP  G  G   
Sbjct: 170 LAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVE 229

Query: 61  DVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDKE 119
           DV  Q  E +  +  + R+ + FTG+  E+VQ+  +RDR++S  EA+E+G+IDG+++ E
Sbjct: 230 DVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLETE 288


>AT1G11750.1 | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease
           proteolytic subunit 6 | chr1:3967609-3969535 FORWARD
           LENGTH=271
          Length = 271

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 81/119 (68%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 60
           +AIYD +  ++  V T+A G+AAS  +++L GG KG R+AMPNTR+MIHQP  G  G   
Sbjct: 152 LAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVE 211

Query: 61  DVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDKE 119
           DV  Q  E +  +  + R+ + FTG+  E+VQ+  +RDR++S  EA+E+G+IDG+++ E
Sbjct: 212 DVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLETE 270


>AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP protease
           P7 | chr5:7783811-7784826 FORWARD LENGTH=241
          Length = 241

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 86/131 (65%), Gaps = 3/131 (2%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 60
           +AIYD +Q +R+ +STI LG AAS AS++L  G KG+R ++PN  +MIHQP GG SGQA 
Sbjct: 104 LAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAK 163

Query: 61  DVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDKES 120
           D+ I  K+++   + +  +    TG+  + V  ++DRD +M+P EA  +GIID VID+  
Sbjct: 164 DITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDER- 222

Query: 121 IIPLEPVPERV 131
             PLE V + V
Sbjct: 223 --PLELVKDAV 231


>AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 |
           chr4:9586740-9589297 REVERSE LENGTH=305
          Length = 305

 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 75/119 (63%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 60
            AIYD +  V+  + T+ +G A   A+++L  G KG R A+P++ IMI QP+    GQA 
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228

Query: 61  DVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDKE 119
           DVEI  KE+ H K  + ++ S   G++ EQ++ D+ R +Y SP EAVEYGIID V+  E
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNE 287


>ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P |
           chrC:69910-71882 REVERSE LENGTH=196
          Length = 196

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGG-ASGQA 59
           MAIYD +Q VR DV TI +G+AAS AS IL GG   KR A P+ R+MIHQP       Q 
Sbjct: 78  MAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEAQT 137

Query: 60  IDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGV 115
            +  ++A+E++  +  +TR+    TG+    + +D++RD +MS  EA  +GI+D V
Sbjct: 138 GEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSATEAQAHGIVDLV 193


>AT1G09130.3 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2939731-2942217
           REVERSE LENGTH=370
          Length = 370

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 2/118 (1%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASG--Q 58
            AIYD++  ++ +V T+ +G A   A ++L  GTKGKRF MP+ + MI QP   +SG   
Sbjct: 186 FAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMP 245

Query: 59  AIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 116
           A DV I+AKEV+ N++ +  ++S  TG + E V   + R  YM   +A E+G+ID ++
Sbjct: 246 ASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVIDRIL 303


>AT1G09130.2 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2940063-2942217
           REVERSE LENGTH=330
          Length = 330

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 2/118 (1%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASG--Q 58
            AIYD++  ++ +V T+ +G A   A ++L  GTKGKRF MP+ + MI QP   +SG   
Sbjct: 186 FAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMP 245

Query: 59  AIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 116
           A DV I+AKEV+ N++ +  ++S  TG + E V   + R  YM   +A E+G+ID ++
Sbjct: 246 ASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVIDRIL 303


>AT1G09130.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2940063-2942217
           REVERSE LENGTH=330
          Length = 330

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 2/118 (1%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASG--Q 58
            AIYD++  ++ +V T+ +G A   A ++L  GTKGKRF MP+ + MI QP   +SG   
Sbjct: 186 FAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMP 245

Query: 59  AIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 116
           A DV I+AKEV+ N++ +  ++S  TG + E V   + R  YM   +A E+G+ID ++
Sbjct: 246 ASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVIDRIL 303


>AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease
           proteolytic subunit 2 | chr1:4223099-4224954 FORWARD
           LENGTH=279
          Length = 279

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 74/116 (63%)

Query: 1   MAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 60
           +AIYD ++ +++ V T  +G+A + A  +L  G KG RFAMP +RI +  P G A GQA 
Sbjct: 145 LAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQAD 204

Query: 61  DVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 116
           D++ +AKE+   ++ +   ++  TG+  E+V KD+ R +  +  EA+EYG+ID ++
Sbjct: 205 DIQNEAKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRFNAEEAIEYGLIDKIV 260


>AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease
           proteolytic subunit 1 | chr1:18501936-18504462 REVERSE
           LENGTH=387
          Length = 387

 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 2   AIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQP-LGGASGQAI 60
           AI D +   ++DV TI  G+A   A+++L  G KG R   P++   ++ P +  +SG AI
Sbjct: 237 AIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSGAAI 296

Query: 61  DVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDKE 119
           D+ I+AKE+  N      +++  TG++ EQ+ +DI R +Y+    A++YGI D + D +
Sbjct: 297 DMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIADKIADSQ 355