Miyakogusa Predicted Gene
- Lj2g3v1437080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1437080.1 tr|B9H2R7|B9H2R7_POPTR AP2/ERF domain-containing
transcription factor OS=Populus trichocarpa
GN=ERF4,72.58,2e-19,DNA-binding domain in plant proteins such
as,AP2/ERF domain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NA,CUFF.37053.1
(132 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G24590.1 | Symbols: DRNL, DRN-LIKE, SOB2, ESR2 | DORNROSCHEN-... 64 2e-11
AT1G12980.1 | Symbols: ESR1, DRN | Integrase-type DNA-binding su... 63 5e-11
AT5G18560.1 | Symbols: PUCHI | Integrase-type DNA-binding superf... 60 3e-10
AT5G13910.1 | Symbols: LEP | Integrase-type DNA-binding superfam... 60 5e-10
AT1G28160.1 | Symbols: | Integrase-type DNA-binding superfamily... 55 2e-08
AT3G15210.1 | Symbols: ATERF-4, ERF4, RAP2.5, ATERF4 | ethylene ... 51 2e-07
AT1G28370.1 | Symbols: ERF11, ATERF11 | ERF domain protein 11 | ... 51 3e-07
AT5G44210.1 | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protei... 50 5e-07
AT1G12890.1 | Symbols: | Integrase-type DNA-binding superfamily... 49 9e-07
AT1G28360.1 | Symbols: ERF12, ATERF12 | ERF domain protein 12 | ... 49 1e-06
AT1G53170.1 | Symbols: ATERF-8, ATERF8, ERF8 | ethylene response... 49 1e-06
AT3G20310.1 | Symbols: ATERF-7, ATERF7, ERF7 | ethylene response... 47 3e-06
AT1G50640.1 | Symbols: ERF3, ATERF3 | ethylene responsive elemen... 47 5e-06
>AT1G24590.1 | Symbols: DRNL, DRN-LIKE, SOB2, ESR2 |
DORNROSCHEN-like | chr1:8714389-8715309 REVERSE
LENGTH=306
Length = 306
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 31/47 (65%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNFVY 97
YAAEIRDP SKERRWLGTFDT MRG KARTNFVY
Sbjct: 69 YAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115
>AT1G12980.1 | Symbols: ESR1, DRN | Integrase-type DNA-binding
superfamily protein | chr1:4429791-4430777 FORWARD
LENGTH=328
Length = 328
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 30/47 (63%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNFVY 97
YAAEIRDP SKERRWLGTFDT RGAKARTNF Y
Sbjct: 68 YAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTY 114
>AT5G18560.1 | Symbols: PUCHI | Integrase-type DNA-binding
superfamily protein | chr5:6164859-6165905 REVERSE
LENGTH=348
Length = 348
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 30/47 (63%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNFVY 97
YAAEIRDP +KER WLGTFDT MRG +ARTNFVY
Sbjct: 66 YAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVY 112
>AT5G13910.1 | Symbols: LEP | Integrase-type DNA-binding
superfamily protein | chr5:4482450-4483085 REVERSE
LENGTH=211
Length = 211
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 30/47 (63%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNFVY 97
YAAEIRDP +KER WLGTFDT MRG +ARTNFVY
Sbjct: 31 YAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNFVY 77
>AT1G28160.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:9839387-9840124 FORWARD LENGTH=245
Length = 245
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 29/47 (61%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNFVY 97
YAAEIR+P +KER WLGTFDT +RG ARTNFVY
Sbjct: 50 YAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVY 96
>AT3G15210.1 | Symbols: ATERF-4, ERF4, RAP2.5, ATERF4 | ethylene
responsive element binding factor 4 |
chr3:5121472-5122140 FORWARD LENGTH=222
Length = 222
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 26/45 (57%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNF 95
YAAEIRDP K R WLGTFDT RGAKA+TNF
Sbjct: 36 YAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNF 80
>AT1G28370.1 | Symbols: ERF11, ATERF11 | ERF domain protein 11 |
chr1:9956351-9956851 REVERSE LENGTH=166
Length = 166
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 26/45 (57%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNF 95
YAAEIRDP K R WLGTFDT RGAKA+TNF
Sbjct: 31 YAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNF 75
>AT5G44210.1 | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein
9 | chr5:17806742-17807344 FORWARD LENGTH=200
Length = 200
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 26/45 (57%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNF 95
YAAEIRDP K R WLGTFDT RG+KA+TNF
Sbjct: 44 YAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88
>AT1G12890.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:4391734-4392393 FORWARD LENGTH=219
Length = 219
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNFVY 97
YAAEIR+P +KER WLGTFDT + G+ A TNF Y
Sbjct: 32 YAAEIRNPFTKERHWLGTFDTAEEAAFAYDVAARSISGSLATTNFFY 78
>AT1G28360.1 | Symbols: ERF12, ATERF12 | ERF domain protein 12 |
chr1:9951934-9952503 FORWARD LENGTH=189
Length = 189
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 26/45 (57%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNF 95
YAAEIRDP K R WLGTFDT +RG KA+TNF
Sbjct: 23 YAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNF 67
>AT1G53170.1 | Symbols: ATERF-8, ATERF8, ERF8 | ethylene response
factor 8 | chr1:19821539-19822096 REVERSE LENGTH=185
Length = 185
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 25/45 (55%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNF 95
YAAEIRDP K R WLGTFDT RG KA+TNF
Sbjct: 42 YAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86
>AT3G20310.1 | Symbols: ATERF-7, ATERF7, ERF7 | ethylene response
factor 7 | chr3:7085957-7086691 REVERSE LENGTH=244
Length = 244
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNF 95
+AAEIRDP K R WLGTFD+ +RG KA+TNF
Sbjct: 38 FAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNF 82
>AT1G50640.1 | Symbols: ERF3, ATERF3 | ethylene responsive element
binding factor 3 | chr1:18757602-18758279 REVERSE
LENGTH=225
Length = 225
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 51 YAAEIRDPHSKERRWLGTFDTXXXXXXXXXXXXXXMRGAKARTNF 95
+AAEIRDP K R WLGTFD+ +RG KA+TNF
Sbjct: 39 FAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNF 83