Miyakogusa Predicted Gene

Lj2g3v1019890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1019890.1 Non Chatacterized Hit- tr|B9RUE6|B9RUE6_RICCO
Nuclease, putative OS=Ricinus communis
GN=RCOM_0852190,57.5,0,Ribonuclease H-like,Ribonuclease H-like domain;
RNASE_H,Ribonuclease H domain; RETROELEMENT POL POLY,CUFF.35942.1
         (285 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01410.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   228   3e-60
AT3G01410.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   228   3e-60
AT1G24090.1 | Symbols:  | RNase H family protein | chr1:8520834-...   226   2e-59
AT5G51080.3 | Symbols:  | RNase H family protein | chr5:20769022...   204   8e-53
AT5G51080.2 | Symbols:  | RNase H family protein | chr5:20769022...   203   9e-53
AT5G51080.1 | Symbols:  | RNase H family protein | chr5:20769022...   203   9e-53

>AT3G01410.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:153650-155439 REVERSE
           LENGTH=294
          Length = 294

 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 128/274 (46%), Positives = 170/274 (62%), Gaps = 18/274 (6%)

Query: 20  YKSFSDIQPLLASSVPGETVSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGR 79
           Y+S S+ Q    SSV    +SVYKGY  P+  E+ L S G+K A +S+ A+ V++  FG+
Sbjct: 24  YRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGIKNALFSVNASHVKDDAFGK 83

Query: 80  LVACPYQEPHAYVGTASVVNSSSRSLQGFKQFSASEVPGSSTFS-NLPEHHIGGSGFQVE 138
           L+ CP Q+P +  G +   +S S+ LQ      + E   S +FS + P+  +      + 
Sbjct: 84  LIPCPVQQPSSSQGESLNKSSPSKRLQ---DMGSGE---SGSFSPSPPQKQLKIENDMLR 137

Query: 139 R-PTCL----------SCSLEFDGASKGNPGPAGAGAVLRADDGSKVYRLREGVGTQTNN 187
           R P+ L          SC++EFDGASKGNPG AGAGAVLRA D S ++ LREGVG  TNN
Sbjct: 138 RIPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNN 197

Query: 188 FAEYRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKF 247
            AEYR L+LGL+ A+ +G+K++ V GDSMLVC QVQG WK  +  +A LC +AKEL N F
Sbjct: 198 VAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSF 257

Query: 248 LSFKINHIPREYNSEADVQANFGISLRAGQVEEV 281
            +F I HI RE NSEAD QAN  I L  GQ + +
Sbjct: 258 KTFDIKHIAREKNSEADKQANSAIFLADGQTQVI 291


>AT3G01410.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:153650-155439 REVERSE
           LENGTH=294
          Length = 294

 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 128/274 (46%), Positives = 170/274 (62%), Gaps = 18/274 (6%)

Query: 20  YKSFSDIQPLLASSVPGETVSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGR 79
           Y+S S+ Q    SSV    +SVYKGY  P+  E+ L S G+K A +S+ A+ V++  FG+
Sbjct: 24  YRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGIKNALFSVNASHVKDDAFGK 83

Query: 80  LVACPYQEPHAYVGTASVVNSSSRSLQGFKQFSASEVPGSSTFS-NLPEHHIGGSGFQVE 138
           L+ CP Q+P +  G +   +S S+ LQ      + E   S +FS + P+  +      + 
Sbjct: 84  LIPCPVQQPSSSQGESLNKSSPSKRLQ---DMGSGE---SGSFSPSPPQKQLKIENDMLR 137

Query: 139 R-PTCL----------SCSLEFDGASKGNPGPAGAGAVLRADDGSKVYRLREGVGTQTNN 187
           R P+ L          SC++EFDGASKGNPG AGAGAVLRA D S ++ LREGVG  TNN
Sbjct: 138 RIPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNN 197

Query: 188 FAEYRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKF 247
            AEYR L+LGL+ A+ +G+K++ V GDSMLVC QVQG WK  +  +A LC +AKEL N F
Sbjct: 198 VAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSF 257

Query: 248 LSFKINHIPREYNSEADVQANFGISLRAGQVEEV 281
            +F I HI RE NSEAD QAN  I L  GQ + +
Sbjct: 258 KTFDIKHIAREKNSEADKQANSAIFLADGQTQVI 291


>AT1G24090.1 | Symbols:  | RNase H family protein |
           chr1:8520834-8522737 FORWARD LENGTH=353
          Length = 353

 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/263 (47%), Positives = 170/263 (64%), Gaps = 10/263 (3%)

Query: 20  YKSFSDIQPLLASSVPGETVSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGR 79
           YK  SD Q  + SSV    VSVYKGYSLP+ TEEYL S GLK   YS+ A+D+++ +FG 
Sbjct: 96  YKDLSDCQAQVGSSVFDLPVSVYKGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGA 155

Query: 80  LVACPYQEPHAYVGTASVVNSSSRSLQGFKQFSASEVPGSSTFSNLPEHHIGGSGFQVER 139
           L  C +QEP     T  V    + S    K     ++P S++ S  P   +     +VE 
Sbjct: 156 LTPCLFQEPAP--CTVKVSEDETTSETKSKDDKKDQLP-SASISYDPLEKLS----KVEP 208

Query: 140 PTCLS---CSLEFDGASKGNPGPAGAGAVLRADDGSKVYRLREGVGTQTNNFAEYRGLIL 196
              +S   C +EFDGASKGNPG +GA AVL+ +DGS + R+R+G+G  TNN AEY  LIL
Sbjct: 209 SAYISDETCFIEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALIL 268

Query: 197 GLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSFKINHIP 256
           GLK+AI++GYK+I+VKGDS LVC Q++G WK+ ++ +A L  EAK L NK +SF+I+H+ 
Sbjct: 269 GLKYAIEKGYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVL 328

Query: 257 REYNSEADVQANFGISLRAGQVE 279
           R  N++AD QAN  + L  G+VE
Sbjct: 329 RNLNADADEQANLAVRLPEGEVE 351


>AT5G51080.3 | Symbols:  | RNase H family protein |
           chr5:20769022-20770486 REVERSE LENGTH=259
          Length = 259

 Score =  204 bits (518), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 113/260 (43%), Positives = 155/260 (59%), Gaps = 32/260 (12%)

Query: 20  YKSFSDIQPLLASSVPGETVSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGR 79
           YK   D Q  + SSV    VSVYKGYSL + TEE L + GLK   Y   A D++E +FG 
Sbjct: 30  YKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKPLYVFRALDLKEDMFGA 89

Query: 80  LVACPYQEPHAYVGTASVVNSSSRSLQGFKQFSASEVPGSSTFSNLPEHHIGGSGFQVER 139
           L  C +Q+          + S+S S++   +      P + T                  
Sbjct: 90  LTPCLFQDQ---------LPSASMSVEKLAELE----PSADTSYE--------------- 121

Query: 140 PTCLSCSLEFDGASKGNPGPAGAGAVLRADDGSKVYRLREGVGTQTNNFAEYRGLILGLK 199
               +C +EFDGASKGNPG +GA AVL+ +DGS ++++R+G+G  TNN AEY GLILGLK
Sbjct: 122 ----TCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLK 177

Query: 200 HAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSFKINHIPREY 259
           HAI++GY  I+VK DS LVC Q++G WK+ ++ ++ L  EAK+L +K LSF+I+H+ R  
Sbjct: 178 HAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSL 237

Query: 260 NSEADVQANFGISLRAGQVE 279
           NS+AD QAN    L  G+VE
Sbjct: 238 NSDADEQANMAARLSEGEVE 257


>AT5G51080.2 | Symbols:  | RNase H family protein |
           chr5:20769022-20770675 REVERSE LENGTH=322
          Length = 322

 Score =  203 bits (517), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 113/260 (43%), Positives = 153/260 (58%), Gaps = 32/260 (12%)

Query: 20  YKSFSDIQPLLASSVPGETVSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGR 79
           YK   D Q  + SSV    VSVYKGYSL + TEE L + GLK   Y   A D++E +FG 
Sbjct: 93  YKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKPLYVFRALDLKEDMFGA 152

Query: 80  LVACPYQEPHAYVGTASVVNSSSRSLQGFKQFSASEVPGSSTFSNLPEHHIGGSGFQVER 139
           L  C +Q+          + S+S S++   +   S      T                  
Sbjct: 153 LTPCLFQDQ---------LPSASMSVEKLAELEPSADTSYET------------------ 185

Query: 140 PTCLSCSLEFDGASKGNPGPAGAGAVLRADDGSKVYRLREGVGTQTNNFAEYRGLILGLK 199
                C +EFDGASKGNPG +GA AVL+ +DGS ++++R+G+G  TNN AEY GLILGLK
Sbjct: 186 -----CIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLK 240

Query: 200 HAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSFKINHIPREY 259
           HAI++GY  I+VK DS LVC Q++G WK+ ++ ++ L  EAK+L +K LSF+I+H+ R  
Sbjct: 241 HAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSL 300

Query: 260 NSEADVQANFGISLRAGQVE 279
           NS+AD QAN    L  G+VE
Sbjct: 301 NSDADEQANMAARLSEGEVE 320


>AT5G51080.1 | Symbols:  | RNase H family protein |
           chr5:20769022-20770675 REVERSE LENGTH=322
          Length = 322

 Score =  203 bits (517), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 113/260 (43%), Positives = 153/260 (58%), Gaps = 32/260 (12%)

Query: 20  YKSFSDIQPLLASSVPGETVSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGR 79
           YK   D Q  + SSV    VSVYKGYSL + TEE L + GLK   Y   A D++E +FG 
Sbjct: 93  YKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKPLYVFRALDLKEDMFGA 152

Query: 80  LVACPYQEPHAYVGTASVVNSSSRSLQGFKQFSASEVPGSSTFSNLPEHHIGGSGFQVER 139
           L  C +Q+          + S+S S++   +   S      T                  
Sbjct: 153 LTPCLFQDQ---------LPSASMSVEKLAELEPSADTSYET------------------ 185

Query: 140 PTCLSCSLEFDGASKGNPGPAGAGAVLRADDGSKVYRLREGVGTQTNNFAEYRGLILGLK 199
                C +EFDGASKGNPG +GA AVL+ +DGS ++++R+G+G  TNN AEY GLILGLK
Sbjct: 186 -----CIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLK 240

Query: 200 HAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSFKINHIPREY 259
           HAI++GY  I+VK DS LVC Q++G WK+ ++ ++ L  EAK+L +K LSF+I+H+ R  
Sbjct: 241 HAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSL 300

Query: 260 NSEADVQANFGISLRAGQVE 279
           NS+AD QAN    L  G+VE
Sbjct: 301 NSDADEQANMAARLSEGEVE 320