Miyakogusa Predicted Gene

Lj2g3v0878890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0878890.1 tr|B9H976|B9H976_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1080900 PE=4 SV=1,62.9,7e-16,
,NODE_91793_length_285_cov_7.677193.path1.1
         (63 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19740.1 | Symbols:  | Peptidase M28 family protein | chr5:66...    54   1e-08

>AT5G19740.1 | Symbols:  | Peptidase M28 family protein |
           chr5:6673986-6676767 FORWARD LENGTH=681
          Length = 681

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 8/63 (12%)

Query: 1   MSGEDGDKILKSTGAPVAKDDWQGSQDAPTYRIGPGPGILHLNYTGQDIIATIQNVIGVI 60
           +S  D + ILK+    V+        D   Y +GPGPG+L+L+Y G+ +IA I+NVIGVI
Sbjct: 267 VSAADAEVILKTVVGDVS--------DGDVYPVGPGPGVLNLSYIGETVIAKIENVIGVI 318

Query: 61  EGE 63
           EGE
Sbjct: 319 EGE 321