Miyakogusa Predicted Gene

Lj2g3v0834810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0834810.1 Non Chatacterized Hit- tr|H9WD81|H9WD81_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=0,54.93,2e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; DUF1675,Protein of unknown function DUF16,CUFF.35534.1
         (488 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28910.3 | Symbols: NINJA | novel interactor of JAZ | chr4:14...   280   2e-75
AT4G28910.1 | Symbols: NINJA | novel interactor of JAZ | chr4:14...   280   2e-75
AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ | chr4:14...   280   2e-75
AT3G29575.4 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...    72   1e-12
AT3G29575.3 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...    72   1e-12
AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...    72   1e-12
AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) fami...    70   4e-12
AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1:...    65   8e-11
AT1G69260.1 | Symbols: AFP1 | ABI five binding protein | chr1:26...    64   2e-10
AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding prot...    60   3e-09

>AT4G28910.3 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 185/463 (39%), Positives = 257/463 (55%), Gaps = 103/463 (22%)

Query: 31  DLRAEEVGKGNKMADDFKSIF--DTDKP-DSITGTRRNES-SKPEENFFSDLSKVKEDNT 86
           + RAE   +  K+ DDFK+     + +P +  +G++R++S  +P +NFF+DLSK      
Sbjct: 36  NYRAEGGDRSAKVIDDFKNFLHPTSQRPAEPSSGSQRSDSGQQPPQNFFNDLSKAPTTEA 95

Query: 87  SLNLNARGFLGANSSRPIEIEEDKRLETVSKRKISFDEIRNQKKHDSDVHHTDLHDR-TR 145
                        S++P+ +E++ R E  +KRK  F  + + KK + D  H D+H++ T+
Sbjct: 96  EA-----------STKPLWVEDESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTK 144

Query: 146 TSHIS-VTEDGSTAENEDVADSEAENSTSRPLSHHSDGSKGFIRVGATSDAPKEV-RGVA 203
            SH+S  T++GSTAENEDVA+SE                   +  G++S+  KEV R   
Sbjct: 145 ASHVSTATDEGSTAENEDVAESE-------------------VGGGSSSNHAKEVVRPPT 185

Query: 204 DSNATD-FNGQKR--FIGSSEKDFKHANMTYGASFSVQPINM--NMPYPSPVKESNSVGA 258
           D+N  D   GQ+R    GS  ++F   NM+Y   F+V P N+  +MPY  P KES    A
Sbjct: 186 DTNIVDNLTGQRRSNHGGSGTEEFTMRNMSYTVPFTVHPQNVVTSMPYSLPTKESGQHAA 245

Query: 259 PSPQIPGMMHMMSTATGDRTGAQSVNNGNLPAMFGYPPVQLPMLDKDSSWGLGSRPQQLH 318
            +  +                  + N GNLP MFGY PVQLPMLDKD S G+ +  Q   
Sbjct: 246 ATSLL----------------QPNANAGNLPIMFGYSPVQLPMLDKDGSGGIVALSQS-- 287

Query: 319 PSFVGRGPTNPASLHMMSNNISEAVPYEGRPLERLKGDGKQRVTEDGSSSQHEDVKGSST 378
             F GR P+N A+                      KG+GKQ V E+GSS           
Sbjct: 288 -PFAGRVPSNSATA---------------------KGEGKQPVAEEGSS----------- 314

Query: 379 NLRAKDVSDQPKGEGS------AVDFSNIKPGLAADVKFGGGGSYPNLPWVSTSGSGPNG 432
               +D S++P G+ S      + DFS IKPG+AADVKFGG G+ PNLPWVST+GSGP+G
Sbjct: 315 ----EDASERPTGDNSNLNTAFSFDFSAIKPGMAADVKFGGSGARPNLPWVSTTGSGPHG 370

Query: 433 RTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQE 475
           RTISGVTYRY++NQI+IVCACHG+H++PEEFVRHAS++  + E
Sbjct: 371 RTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHASEEYVSPE 413


>AT4G28910.1 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 185/463 (39%), Positives = 257/463 (55%), Gaps = 103/463 (22%)

Query: 31  DLRAEEVGKGNKMADDFKSIF--DTDKP-DSITGTRRNES-SKPEENFFSDLSKVKEDNT 86
           + RAE   +  K+ DDFK+     + +P +  +G++R++S  +P +NFF+DLSK      
Sbjct: 36  NYRAEGGDRSAKVIDDFKNFLHPTSQRPAEPSSGSQRSDSGQQPPQNFFNDLSKAPTTEA 95

Query: 87  SLNLNARGFLGANSSRPIEIEEDKRLETVSKRKISFDEIRNQKKHDSDVHHTDLHDR-TR 145
                        S++P+ +E++ R E  +KRK  F  + + KK + D  H D+H++ T+
Sbjct: 96  EA-----------STKPLWVEDESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTK 144

Query: 146 TSHIS-VTEDGSTAENEDVADSEAENSTSRPLSHHSDGSKGFIRVGATSDAPKEV-RGVA 203
            SH+S  T++GSTAENEDVA+SE                   +  G++S+  KEV R   
Sbjct: 145 ASHVSTATDEGSTAENEDVAESE-------------------VGGGSSSNHAKEVVRPPT 185

Query: 204 DSNATD-FNGQKR--FIGSSEKDFKHANMTYGASFSVQPINM--NMPYPSPVKESNSVGA 258
           D+N  D   GQ+R    GS  ++F   NM+Y   F+V P N+  +MPY  P KES    A
Sbjct: 186 DTNIVDNLTGQRRSNHGGSGTEEFTMRNMSYTVPFTVHPQNVVTSMPYSLPTKESGQHAA 245

Query: 259 PSPQIPGMMHMMSTATGDRTGAQSVNNGNLPAMFGYPPVQLPMLDKDSSWGLGSRPQQLH 318
            +  +                  + N GNLP MFGY PVQLPMLDKD S G+ +  Q   
Sbjct: 246 ATSLL----------------QPNANAGNLPIMFGYSPVQLPMLDKDGSGGIVALSQS-- 287

Query: 319 PSFVGRGPTNPASLHMMSNNISEAVPYEGRPLERLKGDGKQRVTEDGSSSQHEDVKGSST 378
             F GR P+N A+                      KG+GKQ V E+GSS           
Sbjct: 288 -PFAGRVPSNSATA---------------------KGEGKQPVAEEGSS----------- 314

Query: 379 NLRAKDVSDQPKGEGS------AVDFSNIKPGLAADVKFGGGGSYPNLPWVSTSGSGPNG 432
               +D S++P G+ S      + DFS IKPG+AADVKFGG G+ PNLPWVST+GSGP+G
Sbjct: 315 ----EDASERPTGDNSNLNTAFSFDFSAIKPGMAADVKFGGSGARPNLPWVSTTGSGPHG 370

Query: 433 RTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQE 475
           RTISGVTYRY++NQI+IVCACHG+H++PEEFVRHAS++  + E
Sbjct: 371 RTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHASEEYVSPE 413


>AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 185/463 (39%), Positives = 257/463 (55%), Gaps = 103/463 (22%)

Query: 31  DLRAEEVGKGNKMADDFKSIF--DTDKP-DSITGTRRNES-SKPEENFFSDLSKVKEDNT 86
           + RAE   +  K+ DDFK+     + +P +  +G++R++S  +P +NFF+DLSK      
Sbjct: 36  NYRAEGGDRSAKVIDDFKNFLHPTSQRPAEPSSGSQRSDSGQQPPQNFFNDLSKAPTTEA 95

Query: 87  SLNLNARGFLGANSSRPIEIEEDKRLETVSKRKISFDEIRNQKKHDSDVHHTDLHDR-TR 145
                        S++P+ +E++ R E  +KRK  F  + + KK + D  H D+H++ T+
Sbjct: 96  EA-----------STKPLWVEDESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTK 144

Query: 146 TSHIS-VTEDGSTAENEDVADSEAENSTSRPLSHHSDGSKGFIRVGATSDAPKEV-RGVA 203
            SH+S  T++GSTAENEDVA+SE                   +  G++S+  KEV R   
Sbjct: 145 ASHVSTATDEGSTAENEDVAESE-------------------VGGGSSSNHAKEVVRPPT 185

Query: 204 DSNATD-FNGQKR--FIGSSEKDFKHANMTYGASFSVQPINM--NMPYPSPVKESNSVGA 258
           D+N  D   GQ+R    GS  ++F   NM+Y   F+V P N+  +MPY  P KES    A
Sbjct: 186 DTNIVDNLTGQRRSNHGGSGTEEFTMRNMSYTVPFTVHPQNVVTSMPYSLPTKESGQHAA 245

Query: 259 PSPQIPGMMHMMSTATGDRTGAQSVNNGNLPAMFGYPPVQLPMLDKDSSWGLGSRPQQLH 318
            +  +                  + N GNLP MFGY PVQLPMLDKD S G+ +  Q   
Sbjct: 246 ATSLL----------------QPNANAGNLPIMFGYSPVQLPMLDKDGSGGIVALSQS-- 287

Query: 319 PSFVGRGPTNPASLHMMSNNISEAVPYEGRPLERLKGDGKQRVTEDGSSSQHEDVKGSST 378
             F GR P+N A+                      KG+GKQ V E+GSS           
Sbjct: 288 -PFAGRVPSNSATA---------------------KGEGKQPVAEEGSS----------- 314

Query: 379 NLRAKDVSDQPKGEGS------AVDFSNIKPGLAADVKFGGGGSYPNLPWVSTSGSGPNG 432
               +D S++P G+ S      + DFS IKPG+AADVKFGG G+ PNLPWVST+GSGP+G
Sbjct: 315 ----EDASERPTGDNSNLNTAFSFDFSAIKPGMAADVKFGGSGARPNLPWVSTTGSGPHG 370

Query: 433 RTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQE 475
           RTISGVTYRY++NQI+IVCACHG+H++PEEFVRHAS++  + E
Sbjct: 371 RTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHASEEYVSPE 413


>AT3G29575.4 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)

Query: 419 NLPWVSTSGSGPNGRTISGVTYRYSS-NQIRIVCACHGTHLTPEEFVRHA 467
           ++P+VST+G GPNG+ I+G  YRY    ++RIVC CHG+ L+P EFV+HA
Sbjct: 162 DMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHA 211


>AT3G29575.3 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)

Query: 419 NLPWVSTSGSGPNGRTISGVTYRYSS-NQIRIVCACHGTHLTPEEFVRHA 467
           ++P+VST+G GPNG+ I+G  YRY    ++RIVC CHG+ L+P EFV+HA
Sbjct: 162 DMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHA 211


>AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)

Query: 419 NLPWVSTSGSGPNGRTISGVTYRYSS-NQIRIVCACHGTHLTPEEFVRHA 467
           ++P+VST+G GPNG+ I+G  YRY    ++RIVC CHG+ L+P EFV+HA
Sbjct: 162 DMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHA 211


>AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           | chr3:2300579-2308305 REVERSE LENGTH=1294
          Length = 1294

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 38/51 (74%)

Query: 417 YPNLPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 467
           +  +P V+++G+GP G+T++G  YRYS ++I I+C CHGT  +P EF+ HA
Sbjct: 217 FAQMPCVTSTGNGPEGKTVNGFLYRYSKSEISIICVCHGTSFSPAEFIVHA 267


>AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 |
           chr1:4713969-4715158 FORWARD LENGTH=348
          Length = 348

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 419 NLPWVSTSGSGPNGRTISGVTYRYSS-NQIRIVCACHGTHLTPEEFVRHA 467
           ++P V T G GPNGR + G+ Y+Y    ++RI+C CHG+ LTP EFV+H 
Sbjct: 278 DMPCVFTKGDGPNGRRVDGILYKYGKGEEVRIMCICHGSFLTPAEFVKHG 327


>AT1G69260.1 | Symbols: AFP1 | ABI five binding protein |
           chr1:26039314-26040570 FORWARD LENGTH=345
          Length = 345

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 420 LPWVSTSGSGPNGRTISGVTYRYSS-NQIRIVCACHGTHLTPEEFVRHA 467
           +P V T G GPNG+ + G+ YRY S  ++RI+C CHG  L+P +FV+HA
Sbjct: 274 MPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKHA 322


>AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding protein
           2) family protein | chr3:385478-386437 REVERSE
           LENGTH=319
          Length = 319

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 419 NLPWVSTSGSGPNGRTISGVTYRYSSN--QIRIVCACHGTHLTPEEFVRHASDDKANQEG 476
           ++P VST   G +G+ + G  Y Y  N  +++IVC CHG+ L+P EFVRH     ++ +G
Sbjct: 240 DMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSFLSPAEFVRHGGGTVSDDDG 299

Query: 477 NAVL 480
             V+
Sbjct: 300 GDVM 303