Miyakogusa Predicted Gene

Lj2g3v0721170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0721170.1 Non Chatacterized Hit- tr|D8T1W0|D8T1W0_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,67.24,1e-18,SUBFAMILY NOT NAMED,NULL;
AMSH,NULL,CUFF.35309.1
         (61 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3 ...   110   2e-25
AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3 ...    86   5e-18
AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3 ...    85   1e-17
AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3 ...    82   7e-17
AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3 ...    80   2e-16

>AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3
           domain of STAM 1 | chr1:18043925-18047427 REVERSE
           LENGTH=507
          Length = 507

 Score =  110 bits (276), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/58 (79%), Positives = 53/58 (91%)

Query: 4   RNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           RNHGIFRLTTPGGM+VI+ CD+RGFH H+ P DGGPIY+TC +VYMNP+LKFDVIDLR
Sbjct: 450 RNHGIFRLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKFDVIDLR 507


>AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=222
          Length = 222

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 5   NHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           N+GIF+LT PGGM V++ C + GFHPH +P DG P+Y+ C++VY N +L+F++ DLR
Sbjct: 166 NYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFEIFDLR 222


>AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=223
          Length = 223

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 46/58 (79%)

Query: 4   RNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           +++GIF+LT PGGM V++ C + GFHPH +P DG P+Y+ C++VY N +L+F++ DLR
Sbjct: 166 KSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFEIFDLR 223


>AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503907-3505190 FORWARD
           LENGTH=166
          Length = 166

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 46/58 (79%)

Query: 4   RNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           +++GIF+LT PGGM V++ C + GFHPH +P DG P+Y+ C++VY N +L+F++ DLR
Sbjct: 109 KSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFEIFDLR 166


>AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3
           domain of STAM 3 | chr4:9138053-9141422 REVERSE
           LENGTH=507
          Length = 507

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 6   HGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           HGIF L+ P G+SVI+ C QRGFHPH +  DG PIY+ C+ V++N  LK++V+DLR
Sbjct: 452 HGIFHLSDPSGVSVIRNCQQRGFHPHEESEDGNPIYEHCSHVFLNAKLKYEVLDLR 507