Miyakogusa Predicted Gene

Lj2g3v0561250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0561250.1 Non Chatacterized Hit- tr|F6HHC1|F6HHC1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,64.79,0.000000000000002,Ribonuclease H-like,Ribonuclease H-like
domain; CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT,NULL; CAF1,Ri,70725_g.1
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44260.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    77   3e-15
AT5G22250.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    74   2e-14
AT5G10960.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    69   9e-13
AT2G32070.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    65   8e-12
AT1G15920.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    60   3e-10
AT1G15920.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...    60   3e-10
AT1G80780.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...    58   1e-09
AT1G80780.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    58   1e-09
AT1G80780.3 | Symbols:  | Polynucleotidyl transferase, ribonucle...    58   1e-09

>AT3G44260.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:15952213-15953055
           REVERSE LENGTH=280
          Length = 280

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTG-GWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWID 73
           D L+LIQVGLT SD   NLPDLG      F+W+FNFRDF+ +RDAHA DSI+LL  Q ID
Sbjct: 76  DALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGID 135

Query: 74  FDLNAVAGL 82
           F+ N   G+
Sbjct: 136 FERNCRDGV 144


>AT5G22250.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:7365605-7366441
           REVERSE LENGTH=278
          Length = 278

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLG-TGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWID 73
           D L+LIQVGLT SDA  NLPDLG      ++W+FNFRDF+  RD HA DSI+LL    ID
Sbjct: 74  DALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGID 133

Query: 74  FDLNAVAGL 82
           F+ N   G+
Sbjct: 134 FERNRREGV 142


>AT5G10960.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:3464581-3465414
           FORWARD LENGTH=277
          Length = 277

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 7/81 (8%)

Query: 8   HNDCNLR------DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHAT 61
           +ND N R      D+L LIQVGLT SD   NLP  GT  +  +WQFNFR+FN   D +A+
Sbjct: 57  NNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFC-IWQFNFREFNIGEDIYAS 115

Query: 62  DSIKLLCHQWIDFDLNAVAGL 82
           +SI+LL    IDF  N   G+
Sbjct: 116 ESIELLRQCGIDFKKNIEKGI 136


>AT2G32070.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr2:13640829-13641656
           REVERSE LENGTH=275
          Length = 275

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 43/68 (63%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           ++L +IQ+GLT SD   NLP  GT     +WQFNFR+F+   D +ATDSI+LL    IDF
Sbjct: 70  NILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDF 129

Query: 75  DLNAVAGL 82
             N   G+
Sbjct: 130 VKNNEFGI 137


>AT1G15920.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:5469962-5470822
           FORWARD LENGTH=286
          Length = 286

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           ++L LIQ+GLT SD   NLP  GT     +WQFNFR+FN   D  A DSI+LL    ID 
Sbjct: 80  NMLKLIQLGLTLSDEKGNLPTCGTNKQC-IWQFNFREFNVISDMFALDSIELLRKSAIDL 138

Query: 75  DLNAVAGL 82
           + N   G+
Sbjct: 139 EKNNECGV 146


>AT1G15920.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:5469962-5470822
           FORWARD LENGTH=286
          Length = 286

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           ++L LIQ+GLT SD   NLP  GT     +WQFNFR+FN   D  A DSI+LL    ID 
Sbjct: 80  NMLKLIQLGLTLSDEKGNLPTCGTNKQC-IWQFNFREFNVISDMFALDSIELLRKSAIDL 138

Query: 75  DLNAVAGL 82
           + N   G+
Sbjct: 139 EKNNECGV 146


>AT1G80780.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:30358517-30359341
           FORWARD LENGTH=274
          Length = 274

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           ++L +IQ+GLT S+   NLP  GT  +  +WQFNFR+F+   D  A DSI+LL    ID 
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYC-IWQFNFREFDLDSDIFALDSIELLKQSGIDL 128

Query: 75  DLNAVAGL 82
             N + G+
Sbjct: 129 AKNTLDGI 136


>AT1G80780.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:30358517-30359341
           FORWARD LENGTH=274
          Length = 274

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           ++L +IQ+GLT S+   NLP  GT  +  +WQFNFR+F+   D  A DSI+LL    ID 
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYC-IWQFNFREFDLDSDIFALDSIELLKQSGIDL 128

Query: 75  DLNAVAGL 82
             N + G+
Sbjct: 129 AKNTLDGI 136


>AT1G80780.3 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:30358517-30359583
           FORWARD LENGTH=286
          Length = 286

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           ++L +IQ+GLT S+   NLP  GT  +  +WQFNFR+F+   D  A DSI+LL    ID 
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYC-IWQFNFREFDLDSDIFALDSIELLKQSGIDL 128

Query: 75  DLNAVAGL 82
             N + G+
Sbjct: 129 AKNTLDGI 136