Miyakogusa Predicted Gene
- Lj1g3v5060590.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v5060590.1 Non Chatacterized Hit- tr|B4F8L8|B4F8L8_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,32.47,6e-19,no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
recognition motif domain; SUBFAMILY N,CUFF.33956.1
(272 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 222 2e-58
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 217 5e-57
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 101 5e-22
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 96 2e-20
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 93 2e-19
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 93 2e-19
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 92 3e-19
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 83 2e-16
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 4e-16
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 71 8e-13
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 71 1e-12
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 70 1e-12
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 70 2e-12
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 69 3e-12
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 69 3e-12
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 69 5e-12
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 9e-12
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 67 2e-11
AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protei... 65 6e-11
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 8e-11
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 63 2e-10
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 63 2e-10
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 63 2e-10
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 62 3e-10
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 62 4e-10
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 61 7e-10
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 61 7e-10
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 60 2e-09
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 59 3e-09
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 59 3e-09
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 59 3e-09
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 59 4e-09
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 59 5e-09
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 59 5e-09
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 7e-09
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 7e-09
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 58 8e-09
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 57 1e-08
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 57 1e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 57 2e-08
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 55 5e-08
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 54 1e-07
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 54 1e-07
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 54 1e-07
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 54 1e-07
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 52 3e-07
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT2G47310.1 | Symbols: | flowering time control protein-related... 52 4e-07
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT4G24270.2 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:1258... 52 4e-07
AT4G24270.1 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:1258... 52 4e-07
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 52 5e-07
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 52 5e-07
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 52 5e-07
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 51 8e-07
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 1e-06
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 50 1e-06
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 50 2e-06
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 49 4e-06
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 49 4e-06
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 49 4e-06
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 102/188 (54%), Positives = 143/188 (76%), Gaps = 1/188 (0%)
Query: 84 EEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSA 143
++ RP E+YVCN+PRS D QLL MF+P GT+IS EV R+ Q+GES+G YVTM SI SA
Sbjct: 103 KKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSA 162
Query: 144 KNAVSALDGLDVGGREMRVRFSVEVNP-RGRNLETMNSSPRRTIYYEAPHKLYVGNLAMS 202
K A+++LDG +VGGREMRVR+SV++NP RN E +NS+P++ + YE+ HK+YVGNL
Sbjct: 163 KIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWF 222
Query: 203 ATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKI 262
P+ +R F++FG + S R+L D K GR R +AF+S+ S ERDAA+S NGT++ GR+I
Sbjct: 223 TQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRI 282
Query: 263 VVRQGVDR 270
+VR+G+++
Sbjct: 283 IVREGIEK 290
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 217 bits (553), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 102/189 (53%), Positives = 143/189 (75%), Gaps = 2/189 (1%)
Query: 84 EEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVC-RHAQSGESKGCAYVTMSSIVS 142
++ RP E+YVCN+PRS D QLL MF+P GT+IS EV R+ Q+GES+G YVTM SI S
Sbjct: 103 KKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINS 162
Query: 143 AKNAVSALDGLDVGGREMRVRFSVEVNP-RGRNLETMNSSPRRTIYYEAPHKLYVGNLAM 201
AK A+++LDG +VGGREMRVR+SV++NP RN E +NS+P++ + YE+ HK+YVGNL
Sbjct: 163 AKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPW 222
Query: 202 SATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRK 261
P+ +R F++FG + S R+L D K GR R +AF+S+ S ERDAA+S NGT++ GR+
Sbjct: 223 FTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRR 282
Query: 262 IVVRQGVDR 270
I+VR+G+++
Sbjct: 283 IIVREGIEK 291
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 8/195 (4%)
Query: 80 QVNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS 139
Q + EEGR +YV NLP + + +L +F GT++ ++ + S+G +VTM S
Sbjct: 110 QASGEEGR---LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGS 166
Query: 140 IVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRT--IYYEAPHKLYVG 197
I AK A+ + +GGR ++V F EV PRG E M + R Y ++PHK+Y G
Sbjct: 167 IEEAKEAMQMFNSSQIGGRTVKVNFP-EV-PRGGENEVMRTKIRDNNRSYVDSPHKVYAG 224
Query: 198 NLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLS-ERERDAAMSLNGTE 256
NL + T + ++ F V +++ + GR R + FIS+ S E + A ++NG E
Sbjct: 225 NLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVE 284
Query: 257 FCGRKIVVRQGVDRE 271
GR + + +RE
Sbjct: 285 VEGRALRLNLASERE 299
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T++Y NLP + D+ L + + EV + +G+S+G A+VTMS++ +
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
LDG + GR ++V F+ + P N P +Y E HKL+VGNL+ + T E +
Sbjct: 145 NLDGTEYLGRALKVNFADKPKP--------NKEP---LYPETEHKLFVGNLSWTVTSESL 193
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVV 264
F G+V R++ D GR R Y F+ Y S+ E + A+ SL+G E GR I V
Sbjct: 194 AGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
VY+ N+PR+ EQL + HG + +V SG S+ + TM S+ A V L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G V GRE++V + + +L + S + + ++P+K+YVGNLA + T E +
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVVRQG 267
LF+ G V S ++ + + + F+++ SE + +AA+ +LN + G+KI V +
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
VY+ N+PR+ EQL + HG + +V SG S+ + TM S+ A V L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G V GRE++V + + +L + S + + ++P+K+YVGNLA + T E +
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVVRQG 267
LF+ G V S ++ + + + F+++ SE + +AA+ +LN + G+KI V +
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V NLP D++ L +F GT+ +EV + + +S+G +VTMS++ A+ AV
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVR 209
+ +V GR + V + PRG E R+ Y+A ++YVGNL +
Sbjct: 174 FNSFEVNGRRLTVNRAA---PRGSRPE------RQPRVYDAAFRIYVGNLPWDVDSGRLE 224
Query: 210 YLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVVRQGV 268
LF+ G V R++ D + GR R + F+ +E E + A+ +L+G GR I V
Sbjct: 225 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
Query: 269 DR 270
+R
Sbjct: 285 ER 286
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V NL +++ L +F GT+ AEV + ++ +S+G +VTMSS+ A+ AV
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVR 209
+ D+ GR + V + PRG E +PR YE ++YVGNL +
Sbjct: 211 FNRYDLNGRLLTVN---KAAPRGSRPER---APR---VYEPAFRVYVGNLPWDVDNGRLE 261
Query: 210 YLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVVRQGV 268
LF+ G V R++ D + GR R + F++ E + A+S L+G GR I V
Sbjct: 262 QLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
Query: 269 DR 270
+R
Sbjct: 322 ER 323
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
VYV NLP D +L +F HG ++ A V ++G S+G +VTMS + A+SAL
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 151 DGLDVGGREMRVRFSVEVNPR 171
DG ++ GR +RV + E PR
Sbjct: 306 DGQNLEGRAIRVNVAEERPPR 326
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 17/191 (8%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V NLP + D+ QL +F G + EV +G S+G +VTMSS+ + A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPR-------------RTIYYEAPHKLYV 196
+G ++ GR +RV P + + + PR + +++YV
Sbjct: 152 FNGYELDGRPLRVNAG---PPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYV 208
Query: 197 GNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RDAAMSLNGT 255
GNL+ + LF+ G V R++ D GR + + F++Y S +E ++A SL+G
Sbjct: 209 GNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGA 268
Query: 256 EFCGRKIVVRQ 266
+ GR+I V +
Sbjct: 269 DLDGRQIRVSE 279
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 181 SPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISY 240
+P + + A KL+VGNL + + LF GNV V ++ D GR R + F++
Sbjct: 80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139
Query: 241 LSERERD-AAMSLNGTEFCGRKIVVRQG 267
S E + AA NG E GR + V G
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRVNAG 167
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V NLP S + +F GT+ + E+ R + G+++G A+VTM+S A+ A+
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP----HKLYVGNLAMSATP 205
D V GR + V F+ R + + AP HKLYV NLA A
Sbjct: 155 FDTFQVSGRIISVSFA-------RRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARS 207
Query: 206 EDVRYLF--ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKI 262
+R LF A F N S R++ +GR Y F+S+ + E + A++ LNG E GR I
Sbjct: 208 THLRELFTAADF-NPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPI 266
Query: 263 VVR 265
++
Sbjct: 267 TLK 269
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V ++PR+ E++ P F HG ++ + + ++G+ +GC +V ++ A A+ A
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 150 LDG---LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPE 206
L L G ++VR++ R LE KL+VG+L AT +
Sbjct: 106 LHNQITLPGGTGPVQVRYADGERERIGTLE---------------FKLFVGSLNKQATEK 150
Query: 207 DVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGT---EFCGRKI 262
+V +F +FG+V V L++D + + R F+ Y S+ AA+ LNGT C + +
Sbjct: 151 EVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPL 209
Query: 263 VVR 265
+VR
Sbjct: 210 IVR 212
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V ++PR+ E++ P F HG ++ + + ++G+ +GC +V ++ A A+ A
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 150 LDG---LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPE 206
L L G ++VR++ R LE KL+VG+L AT +
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLE---------------FKLFVGSLNKQATEK 225
Query: 207 DVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGT---EFCGRKI 262
+V +F +FG+V V L++D + + R F+ Y S+ AA+ LNGT C + +
Sbjct: 226 EVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPL 284
Query: 263 VVR 265
+VR
Sbjct: 285 IVR 287
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V ++PR+ E++ P F HG ++ + + ++G+ +GC +V ++ A A+ A
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 150 LDG---LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPE 206
L L G ++VR++ R LE KL+VG+L AT +
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLE---------------FKLFVGSLNKQATEK 225
Query: 207 DVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGT---EFCGRKI 262
+V +F +FG+V V L++D + + R F+ Y S+ AA+ LNGT C + +
Sbjct: 226 EVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPL 284
Query: 263 VVR 265
+VR
Sbjct: 285 IVR 287
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV NL S + L MF P G+I+S +V ++G+SKG +V + SA +A SAL
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
G V G+++ V + + R +S+ +YV NL + T + +
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDST-----------NVYVKNLIETVTDDCLHT 220
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLS-ERERDAAMSLNGTEFCGRKIVVRQGVD 269
LF+++G V+SV +++D GR R + F+++ + E + A SL G + +K+ V + +
Sbjct: 221 LFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK 279
Query: 270 RE 271
++
Sbjct: 280 KD 281
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV +L + L+ F + ++S +CR++ +G+S AY+ S SA NA++ L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+ D+ G+ MR+ +S R+L + RRT A LYV NL S T +
Sbjct: 83 NHSDLKGKAMRIMWS------QRDL----AYRRRTRTGFA--NLYVKNLDSSITSSCLER 130
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVVRQGVD 269
+F FG++ S +++++ G+ + + F+ + +E+ +A S L+G+ G+K+ V + ++
Sbjct: 131 MFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFIN 188
Query: 270 RE 271
++
Sbjct: 189 KD 190
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV NL + + L +F +GT+ S V R G S+G +V + +AK A+
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAME 260
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPH----KLYVGNLAMSAT 204
+L GL +G +++ V +++ + R L+ S + P+ LYV NL+ S
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDERREMLKQKFSDN----FIAKPNMRWSNLYVKNLSESMN 316
Query: 205 PEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLS-ERERDAAMSLNGTEFCGRKIV 263
+R +F +G + S +++ + GR + + F+ + + E + A LNG G+ IV
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 375
Query: 264 VRQGVDRE 271
VR +E
Sbjct: 376 VRVAERKE 383
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 87 RPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNA 146
R + +YV NL S + +L +F +G I+SA+V H ++G SKG +V S+ +K A
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQA 360
Query: 147 VSALDGLDVGGREMRVRFSVEVNPRGRNLET-MNSSPRRTIYYEAP 191
L+G V G+ + VR + R + L+ + PR+ Y +AP
Sbjct: 361 KRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQ--YTQAP 404
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 31/188 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV NLP+ ++L F +G I SA V + QSG S+ +V S +A AV
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 149 ALDGLDVG------GR---------EMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHK 193
++G+ +G GR E+R +F E R L+ N
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN-------------- 343
Query: 194 LYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLN 253
LY+ NL S E ++ +F+ +GNV S +++ + QG R + F++Y + E AM
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEM 402
Query: 254 GTEFCGRK 261
+ GRK
Sbjct: 403 NGKMIGRK 410
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V++ NL S D + L F GTI+S +V G SKG +V +A+ A+ L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G+ + +++ V V R R+ + P T +YV NL T ++++
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARS--ESGAVPSFT-------NVYVKNLPKEITDDELKK 257
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLS 242
F ++G+++S +++D + G R++ F++++S
Sbjct: 258 TFGKYGDISSAVVMKD-QSGNSRSFGFVNFVS 288
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+ +YV +L S + LL +F + + VCR + S G AYV ++ A A+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
+L+ + R +R+ S N P + + +++ NL S + +
Sbjct: 118 SLNYAPIRDRPIRIMLS-------------NRDPSTRLSGKG--NVFIKNLDASIDNKAL 162
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVVRQG 267
F+ FG + S ++ D+ GR + Y F+ + E AA+ LNG +++ V
Sbjct: 163 YETFSSFGTILSCKVAMDVV-GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHF 221
Query: 268 VDRE 271
V R+
Sbjct: 222 VRRQ 225
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 31/188 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV NLP+ ++L F +G I SA V + QSG S+ +V S +A AV
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 149 ALDGLDVG------GR---------EMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHK 193
++G+ +G GR E+R +F E R L+ N
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN-------------- 343
Query: 194 LYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLN 253
LY+ NL S E ++ +F+ +GNV S +++ + QG R + F++Y + E AM
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEM 402
Query: 254 GTEFCGRK 261
+ GRK
Sbjct: 403 NGKMIGRK 410
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V++ NL S D + L F GTI+S +V G SKG +V +A+ A+ L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G+ + +++ V V R R+ + P T +YV NL T ++++
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARS--ESGAVPSFT-------NVYVKNLPKEITDDELKK 257
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLS 242
F ++G+++S +++D + G R++ F++++S
Sbjct: 258 TFGKYGDISSAVVMKD-QSGNSRSFGFVNFVS 288
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+ +YV +L S + LL +F + + VCR + S G AYV ++ A A+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
+L+ + R +R+ S N P + + +++ NL S + +
Sbjct: 118 SLNYAPIRDRPIRIMLS-------------NRDPSTRLSGKG--NVFIKNLDASIDNKAL 162
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVVRQG 267
F+ FG + S ++ D+ GR + Y F+ + E AA+ LNG +++ V
Sbjct: 163 YETFSSFGTILSCKVAMDVV-GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHF 221
Query: 268 VDRE 271
V R+
Sbjct: 222 VRRQ 225
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ NL S D + L F G I+S +V + SG+SKG +V ++ SA+ A+ L
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G+ + ++ V V P R E +S+ +T + +YV NLA S T +D++
Sbjct: 185 NGMLLNDKQ------VYVGPFLRRQER-DSTANKTKF----TNVYVKNLAESTTDDDLKN 233
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM---SLNGTEFCGRKIVV 264
F +G + S +++D +G+ + + F+++ E DAA SLNG +F ++ V
Sbjct: 234 AFGEYGKITSAVVMKD-GEGKSKGFGFVNF--ENADDAARAVESLNGHKFDDKEWYV 287
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 31/178 (17%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV NL S + L F +G I SA V + + G+SKG +V + A AV
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273
Query: 149 ALDGLDVGGRE---------------MRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHK 193
+L+G +E +RVR+ + ++ N
Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSN-------------- 319
Query: 194 LYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS 251
LYV NL S + E ++ +F+ FG V S ++++D G + F+++ + E AMS
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS 376
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T +YV +L + QL F GT+++ VCR + S G YV ++ A A+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + + G+ +RV +S + S RR+ +++ NL S + +
Sbjct: 96 ELNYIPLYGKPIRVMYS-----------HRDPSVRRS----GAGNIFIKNLDESIDHKAL 140
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVV 264
F+ FGN+ S ++ D G+ + Y F+ Y +E A+ LNG +++ V
Sbjct: 141 HDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 10/185 (5%)
Query: 80 QVNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS 139
+V +EE T + N+P + E + +F +G++I E+ H + ++G ++ M+S
Sbjct: 85 EVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMAS 143
Query: 140 IVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNL 199
A A+ +L+ + GR ++V ++ +PR T L+V NL
Sbjct: 144 PEEAATALKSLESCEYEGRRLKVDYAKTKK-------KKTYAPRETPSPVPTFNLFVANL 196
Query: 200 AMSATPEDVRYLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEF 257
A A + ++ F A GNV S ++ R Y F+S+ ++++ +AA+ G +F
Sbjct: 197 AFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDF 256
Query: 258 CGRKI 262
GR I
Sbjct: 257 LGRPI 261
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Query: 82 NDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIV 141
N R T VYV NLP+ ++L F G I SA V R QSG S+ +V
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTE 280
Query: 142 SAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP-HKLYVGNLA 200
+A +AV ++G+ +G + V + + + R L R + ++ LY+ NL
Sbjct: 281 AAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLD 340
Query: 201 MSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGR 260
S E ++ +F+ +GNV S +++ + QG R + F++Y + E A+S + GR
Sbjct: 341 DSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399
Query: 261 K 261
K
Sbjct: 400 K 400
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ NL S D + L F GTI+S +V +G SKG +V SA+ A+ L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G+ + +++ V + R R+ T +PR T +YV NL +++R
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT--PTPRFT-------NVYVKNLPKEIGEDELRK 247
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISY-LSERERDAAMSLNG 254
F +FG ++S +++D + G R + F+++ +E A +NG
Sbjct: 248 TFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNG 291
>AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protein 1
| chr3:20515672-20517832 FORWARD LENGTH=597
Length = 597
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 17/184 (9%)
Query: 88 PTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAV 147
P ++YV +P +++ FR G II + + G G A++T + AK A+
Sbjct: 160 PNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRAL 219
Query: 148 SALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTI-------YYEAPHKLYVGNLA 200
A D +G R + ++ V+ T S PRR + +++Y+GNLA
Sbjct: 220 -AFDRAAMGDRYLTIQQYVKT--------TTPSIPRRKTSSGFAPEMVDGYNRVYIGNLA 270
Query: 201 MSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGR 260
T D+R LF+ + SVRL ++ + G + YA + + A+ L+ CGR
Sbjct: 271 WDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGR 329
Query: 261 KIVV 264
+ +
Sbjct: 330 PVKI 333
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T + N+P + E + +F +G++I E+ H + ++G ++ M+S A A+
Sbjct: 34 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMASPEEAATALK 92
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
+L+ + GR ++V ++ +PR T L+V NLA A + +
Sbjct: 93 SLESCEYEGRRLKVDYAKTKK-------KKTYAPRETPSPVPTFNLFVANLAFEARAKHL 145
Query: 209 RYLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKI 262
+ F A GNV S ++ R Y F+S+ ++++ +AA+ G +F GR I
Sbjct: 146 KEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPI 201
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 26/200 (13%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGES---------KGCAYVTMSSIV 141
VYV LP + + + + F ++SA A G++ K A+V M S+
Sbjct: 257 VYVGGLPPTANEQSVSTFFS---QVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVE 313
Query: 142 SAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLETMNSSPRRTIYYE 189
A NA+ ALDG+ + G ++VR + NP NL + S T E
Sbjct: 314 EASNAM-ALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLE 372
Query: 190 APHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAA 249
P +++VG L T +R L FG + L++D + G + YAF Y D A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 250 -MSLNGTEFCGRKIVVRQGV 268
+LNG + + + VR+ +
Sbjct: 433 CAALNGIKMGDKTLTVRRAI 452
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 7/178 (3%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV NL S E+L +F G S + R + G+SKG +V + A AV
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 282
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNL-ETMNSSPRRTIYYEAPHKLYVGNLAMSATPED 207
AL+G +E V + + + R L + S + LYV NL S T +
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVR 265
+R FA FG + S ++++D G R F+++ + E A+ TE G+ IV +
Sbjct: 343 LREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAI----TEMNGKMIVTK 395
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T +YV +L + QL F G ++S VCR + S G YV ++ A A++
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + + GR +RV +SV +P R N +++ NL S + +
Sbjct: 105 ELNFMALNGRAIRVMYSVR-DPSLRKSGVGN--------------IFIKNLDKSIDHKAL 149
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVV 264
F+ FG + S ++ D G+ + Y F+ Y ++ A+ LNG +++ V
Sbjct: 150 HETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 7/178 (3%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV NL S E+L +F G S + R + G+SKG +V + A AV
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 282
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNL-ETMNSSPRRTIYYEAPHKLYVGNLAMSATPED 207
AL+G +E V + + + R L + S + LYV NL S T +
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVR 265
+R FA FG + S ++++D G R F+++ + E A+ TE G+ IV +
Sbjct: 343 LREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAI----TEMNGKMIVTK 395
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T +YV +L + QL F G ++S VCR + S G YV ++ A A++
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + + GR +RV +SV +P R N +++ NL S + +
Sbjct: 105 ELNFMALNGRAIRVMYSVR-DPSLRKSGVGN--------------IFIKNLDKSIDHKAL 149
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVV 264
F+ FG + S ++ D G+ + Y F+ Y ++ A+ LNG +++ V
Sbjct: 150 HETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 18/176 (10%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+V NLP S L MF+ G I+S +V + G+S+G +V +A A+ L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+ V +E+ V G+ ++ + R E LY+ NL + + +R
Sbjct: 173 NSTIVADKEIYV---------GKFMKKTD----RVKPEEKYTNLYMKNLDADVSEDLLRE 219
Query: 211 LFARFGNVASVRLLQDLKQGRR-RAYAFISYLS-ERERDAAMSLNGTEFCGRKIVV 264
FA FG + S+ + +D + R R YAF+++ + E R AA ++NGT+F + + V
Sbjct: 220 KFAEFGKIVSLAIAKD--ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYV 273
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV +L S L F ++ S +C+ A SG S Y S A A+
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+ + G+ +RV +SV RN ++V NL S T ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRN---------------GVGNVFVKNLPESVTNAVLQD 130
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVV 264
+F +FGN+ S ++ L+ G+ R Y F+ + E AA+ +LN T ++I V
Sbjct: 131 MFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
E ++ +VG LA + ED++ F++FG+V +++ D + GR R + F+++ E+ RD
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 248 AAMSLNGTEFCGRKIVVRQGVDRES 272
A +NG E GR I V + R S
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSRGS 87
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V L R + + L F +G I + + + ++G+ +G +VT + +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVR 209
D + G+++ ++ ++ PRG +M+S+ +T K++VG + S ++ +
Sbjct: 102 -DNHIIIGKQVEIKRTI---PRG----SMSSNDFKT------KKIFVGGIPSSVDDDEFK 147
Query: 210 YLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSL-NGTEFCGRKIVVRQ 266
F +FG + ++++D GR R + F++Y SE D ++ N E G ++ +++
Sbjct: 148 EFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKK 205
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
E ++ +VG LA + ED++ F++FG+V +++ D + GR R + F+++ E+ RD
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 248 AAMSLNGTEFCGRKIVVRQ 266
A +NG E GR I V +
Sbjct: 63 AIEEMNGKELDGRVITVNE 81
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
E ++ +VG LA + ED++ F++FG+V +++ D + GR R + F+++ E+ RD
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 248 AAMSLNGTEFCGRKIVVRQ 266
A +NG E GR I V +
Sbjct: 63 AIEEMNGKELDGRVITVNE 81
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + D E+L F +G ++ A + R +G ++G ++ + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 150 LDGLDVGGREMRVRFSVEVNPRG-RNLETMNSSPRRTIYYEAP--------HKLYVGNLA 200
+D + GR + + +V PR + + ++SP I+ +P K++VG L
Sbjct: 65 MDKHIIDGRTVEAKKAV---PRDDQQVLKRHASP---IHLMSPVHGGGGRTKKIFVGGLP 118
Query: 201 MSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGR 260
S T E+ + F +FG +A V ++ D R R + FI++ S+ D + E G+
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 261 KIVVRQGVDRE 271
+ V++ V +E
Sbjct: 179 LVEVKRAVPKE 189
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + D E+L F +G ++ A + R +G ++G ++ + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 150 LDGLDVGGREMRVRFSVEVNPRG-RNLETMNSSPRRTIYYEAP--------HKLYVGNLA 200
+D + GR + + +V PR + + ++SP I+ +P K++VG L
Sbjct: 65 MDKHIIDGRTVEAKKAV---PRDDQQVLKRHASP---IHLMSPVHGGGGRTKKIFVGGLP 118
Query: 201 MSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGR 260
S T E+ + F +FG +A V ++ D R R + FI++ S+ D + E G+
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 261 KIVVRQGVDRE 271
+ V++ V +E
Sbjct: 179 LVEVKRAVPKE 189
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + D E+L F +G ++ A + R +G ++G ++ + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 150 LDGLDVGGREMRVRFSVEVNPRG-RNLETMNSSPRRTIYYEAP--------HKLYVGNLA 200
+D + GR + + +V PR + + ++SP I+ +P K++VG L
Sbjct: 65 MDKHIIDGRTVEAKKAV---PRDDQQVLKRHASP---IHLMSPVHGGGGRTKKIFVGGLP 118
Query: 201 MSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGR 260
S T E+ + F +FG +A V ++ D R R + FI++ S+ D + E G+
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 261 KIVVRQGVDRE 271
+ V++ V +E
Sbjct: 179 LVEVKRAVPKE 189
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + D E+L F +G ++ A + R +G ++G ++ + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 150 LDGLDVGGREMRVRFSVEVNPRG-RNLETMNSSPRRTIYYEAP--------HKLYVGNLA 200
+D + GR + + +V PR + + ++SP I+ +P K++VG L
Sbjct: 65 MDKHIIDGRTVEAKKAV---PRDDQQVLKRHASP---IHLMSPVHGGGGRTKKIFVGGLP 118
Query: 201 MSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGR 260
S T E+ + F +FG +A V ++ D R R + FI++ S+ D + E G+
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 261 KIVVRQGVDRE 271
+ V++ V +E
Sbjct: 179 LVEVKRAVPKE 189
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + D E+L F +G ++ A + R +G ++G ++ + A+ +
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-- 70
Query: 150 LDGLDVGGREMRVRFSVEVNPRG-RNLETMNSSPRRTIYYEAP-----------HKLYVG 197
+D + GR + + +V PR + + ++SP I +P K++VG
Sbjct: 71 MDKHIIDGRTVEAKKAV---PRDDQQVLKRHASPMHLI---SPSHGGNGGGARTKKIFVG 124
Query: 198 NLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEF 257
L S T + + F +FG +A V ++ D R R + FI++ SE D + E
Sbjct: 125 GLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHEL 184
Query: 258 CGRKIVVRQGVDRE 271
G+ + V++ V +E
Sbjct: 185 NGKMVEVKRAVPKE 198
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + D E+L F +G ++ A + R +G ++G ++ + A+ +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-- 73
Query: 150 LDGLDVGGREMRVRFSVEVNPRG-RNLETMNSSPRRTIYYEAP-----------HKLYVG 197
+D + GR + + +V PR + + ++SP I +P K++VG
Sbjct: 74 MDKHIIDGRTVEAKKAV---PRDDQQVLKRHASPMHLI---SPSHGGNGGGARTKKIFVG 127
Query: 198 NLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEF 257
L S T + + F +FG +A V ++ D R R + FI++ SE D + E
Sbjct: 128 GLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHEL 187
Query: 258 CGRKIVVRQGVDRE 271
G+ + V++ V +E
Sbjct: 188 NGKMVEVKRAVPKE 201
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+V NL S D +QL MF G ++S +V R A SG SKG +V S +S A +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G + + + V V ++ N +YV NL +AT D++
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQWDKSRVFTN--------------VYVKNLVETATDADLKR 137
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISY-LSERERDAAMSLNGT 255
LF FG + S +++D +G+ R + F+++ +E A +NG
Sbjct: 138 LFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKMNGV 182
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 5/179 (2%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV NL + L +F G I SA V + + G+S+ +V +A A+
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIE 177
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPR--RTIYYEAPHKLYVGNLAMSATPE 206
++G+ V +E+ V + R +L+ + R + LYV NL S
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 207 DVRYLFARFGNVASVRLLQDLKQGRRRAYAFISY-LSERERDAAMSLNGTEFCGRKIVV 264
+ LF+ FG + S +++ G + F+ + SE A + +NG + I V
Sbjct: 238 KLEELFSEFGTITSCKVMVH-SNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 15/186 (8%)
Query: 93 VCNLPRSCDTEQLLPMFRP---HGTIISAEVCRHAQSGE--SKGCAYVTMSSIVSAKNAV 147
V NL E L F G I+S + +H ++ + S G +V S+ +A +
Sbjct: 606 VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVY 665
Query: 148 SALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPED 207
L G + G + +RF N R + ++ + KL+V N+A AT +
Sbjct: 666 RDLQGTVLDGHALILRFCE--NKRSDKVGKDSNKDKPCT------KLHVKNIAFEATKRE 717
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERER-DAAMSLNGTEFCGRKIVVRQ 266
+R LF+ FG + S+RL + G+ YAF+ +++++E +A +L T F GR +V+
Sbjct: 718 LRQLFSPFGQIKSMRLPKK-NIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEW 776
Query: 267 GVDRES 272
D S
Sbjct: 777 ANDDNS 782
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 130 KGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLET 177
K A+V M S+ A NA+S LDG+ G ++VR + NP NL
Sbjct: 286 KKFAFVEMRSVEEASNAMS-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAA 344
Query: 178 MNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAF 237
+ +P + E P +++VG L T VR L FG + L++D + G + YAF
Sbjct: 345 VGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
Query: 238 ISYLSERERDAA-MSLNGTEFCGRKIVVRQ 266
Y D A +LNG + + + VR+
Sbjct: 405 CVYQDLSVTDIACAALNGIKMGDKTLTVRR 434
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 130 KGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLET 177
K A+V M S+ A NA+S LDG+ G ++VR + NP NL
Sbjct: 286 KKFAFVEMRSVEEASNAMS-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAA 344
Query: 178 MNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAF 237
+ +P + E P +++VG L T VR L FG + L++D + G + YAF
Sbjct: 345 VGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
Query: 238 ISYLSERERDAA-MSLNGTEFCGRKIVVRQ 266
Y D A +LNG + + + VR+
Sbjct: 405 CVYQDLSVTDIACAALNGIKMGDKTLTVRR 434
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 11/193 (5%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS---IVSAKNA 146
+++V + + E L F +G ++ A V + +G+ +G +V ++ +V A
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 147 VSALDGLDVGGREMRVRFSVEVNPRG-----RNLETMNSSPRRTI---YYEAPHKLYVGN 198
+ G V R+ + + P R ++ MN R K++VG
Sbjct: 67 THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGG 126
Query: 199 LAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFC 258
L+ + T E+ + F RFG V ++ D R R + F++Y SE + M N E
Sbjct: 127 LSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELS 186
Query: 259 GRKIVVRQGVDRE 271
+++ V++ + +E
Sbjct: 187 DKRVEVKRAIPKE 199
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 130 KGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLET 177
K A+V M S+ A NA+S LDG+ G ++VR + NP NL
Sbjct: 264 KKFAFVEMRSVEEASNAMS-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAA 322
Query: 178 MNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAF 237
+ +P + E P +++VG L T VR L FG + L++D + G + YAF
Sbjct: 323 VGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 382
Query: 238 ISYLSERERDAA-MSLNGTEFCGRKIVVRQ 266
Y D A +LNG + + + VR+
Sbjct: 383 CVYQDLSVTDIACAALNGIKMGDKTLTVRR 412
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 130 KGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLET 177
K A+V M S+ A NA+S LDG+ G ++VR + NP NL
Sbjct: 286 KKFAFVEMRSVEEASNAMS-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAA 344
Query: 178 MNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAF 237
+ +P + E P +++VG L T VR L FG + L++D + G + YAF
Sbjct: 345 VGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
Query: 238 ISYLSERERDAA-MSLNGTEFCGRKIVVRQ 266
Y D A +LNG + + + VR+
Sbjct: 405 CVYQDLSVTDIACAALNGIKMGDKTLTVRR 434
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + ++L F G ++ A + + +G ++G +V + A+ V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNL--ETMNSSPRRTIYYEAPHKLYVGNLAMSATPED 207
+D G+ + + +V PR ++ NSS + + K++VG LA S T +
Sbjct: 67 KHIID--GKIVEAKKAV---PRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVRQG 267
+ FA+FG + V ++ D + R R + FISY SE D + E G+ + V+
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Query: 268 VDRE 271
V ++
Sbjct: 182 VPKD 185
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + ++L F G ++ A + + +G ++G +V + A+ V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNL--ETMNSSPRRTIYYEAPHKLYVGNLAMSATPED 207
+D G+ + + +V PR ++ NSS + + K++VG LA S T +
Sbjct: 67 KHIID--GKIVEAKKAV---PRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVRQG 267
+ FA+FG + V ++ D + R R + FISY SE D + E G+ + V+
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Query: 268 VDRE 271
V ++
Sbjct: 182 VPKD 185
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 177 TMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
T +SS ++I + K++VG ++ S +R F+++G V +++ D + GR R +A
Sbjct: 19 TASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFA 78
Query: 237 FISYLSERERDAAMSLNGTEFCGRKIVV 264
F+++ S E AM L+G + GR+I V
Sbjct: 79 FVTFTSTEEASNAMQLDGQDLHGRRIRV 106
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
++++V + S D L F +G ++ A++ ++G S+G A+VT +S A NA+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 149 ALDGLDVGGREMRVRFSVE 167
LDG D+ GR +RV ++ E
Sbjct: 94 -LDGQDLHGRRIRVNYATE 111
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + + E+L F G +I A + + +G ++G +V + A+ ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETM----NSS--------PRRTIYYEAPHKLYVG 197
+D GR + + +V R+ + M NSS P RT K++VG
Sbjct: 67 KHNID--GRLVEAKKAVP-----RDDQNMVNRSNSSSIQGSPGGPGRT------RKIFVG 113
Query: 198 NLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEF 257
L S T D + F +FG V ++ D R R + FI+Y SE + + E
Sbjct: 114 GLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 173
Query: 258 CGRKIVVRQGVDRE 271
G+ + V++ V +E
Sbjct: 174 NGKMVEVKRAVPKE 187
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 12/178 (6%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+ +P + F G + + S SKG Y+ ++S A+ AL
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 228
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP--HKLYVGNLAMSATPEDV 208
G G+ + V+ S +NL NS+ T+ P KLYVGNL + + +
Sbjct: 229 SGQLFLGQPVMVKPSEAE----KNLAQSNST---TVGGTGPADRKLYVGNLHFNMSELQL 281
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLS-ERERDAAMSLNGT-EFCGRKIVV 264
R +F FG V V+L D + G+ + + FI ++ E + A ++LNG E GR I V
Sbjct: 282 RQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + + E+L F G +I A + + +G ++G +V + A+ ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETM----NSS--------PRRTIYYEAPHKLYVG 197
+D GR + + +V R+ + M NSS P RT K++VG
Sbjct: 67 KHNID--GRLVEAKKAVP-----RDDQNMVNRSNSSSIQGSPGGPGRT------RKIFVG 113
Query: 198 NLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEF 257
L S T D + F +FG V ++ D R R + FI+Y SE + + E
Sbjct: 114 GLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 173
Query: 258 CGRKIVVRQGVDRE 271
G+ + V++ V +E
Sbjct: 174 NGKMVEVKRAVPKE 187
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L D L F G ++S +V R+ +G+ +G ++ S +A+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G + G E+ R + G+ + ++ P H ++VG+LA T ++
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKV---DAGPD--------HSIFVGDLAPDVTDYLLQE 134
Query: 211 LF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNG 254
F + +V +++ D GR + Y F+ + E ER+ AM+ +NG
Sbjct: 135 TFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L D L F G ++S +V R+ +G+ +G ++ S +A+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G + G E+ R + G+ + ++ P H ++VG+LA T ++
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKV---DAGPD--------HSIFVGDLAPDVTDYLLQE 134
Query: 211 LF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNG 254
F + +V +++ D GR + Y F+ + E ER+ AM+ +NG
Sbjct: 135 TFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 32/192 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV NL + ++L F +G+I SA V R G+S+ +V + A AV
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVE 283
Query: 149 ALDGLDVGGREMRV---------------RFSVEVNPRGRNLETMNSSPRRTIYYEAPHK 193
AL+G +E V R+ + G + +N
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLN-------------- 329
Query: 194 LYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-L 252
LYV NL + T E +R LFA FG + S ++++D G + F+++ + E ++ +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 253 NGTEFCGRKIVV 264
NG G+ + V
Sbjct: 389 NGKMVGGKPLYV 400
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV NL D L +F G ++ A V SG SKG +VT+SS + A+++L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 151 DGLDVGGREMRVRFSVEVNPRGR 173
+G D+ GR++RV + PRG+
Sbjct: 319 NGADLDGRQIRVSEAEARPPRGQ 341
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV NL D L +F G ++ A V SG SKG +VT+SS + A+++L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 151 DGLDVGGREMRVRFSVEVNPRGR 173
+G D+ GR++RV + PRG+
Sbjct: 319 NGADLDGRQIRVSEAEARPPRGQ 341
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV NL D L +F G ++ A V SG SKG +VT+SS + A+++L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 151 DGLDVGGREMRVRFSVEVNPRGR 173
+G D+ GR++RV + PRG+
Sbjct: 319 NGADLDGRQIRVSEAEARPPRGQ 341
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV NL D L +F G ++ A V SG SKG +VT+SS + A+++L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 151 DGLDVGGREMRVRFSVEVNPRGR 173
+G D+ GR++RV + PRG+
Sbjct: 340 NGADLDGRQIRVSEAEARPPRGQ 362
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L + D ++ +F G SA+V R+ +G+S+G ++ S A+ +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP-HKLYVGNLAMSATPEDVR 209
+G + E R N + +R E P H ++VG+LA PE
Sbjct: 122 NGAPMPSTEQTFRL---------NWAQAGAGEKR-FQTEGPDHTIFVGDLA----PEVTD 167
Query: 210 YLFAR-----FGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFC 258
Y+ + +G+V +++ D GR + Y F+ + E E+ AM+ ++C
Sbjct: 168 YMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYC 221
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/164 (17%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 88 PTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAV 147
P ++++ L + F +G I + + R +G+ +G ++T + +
Sbjct: 18 PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 148 SALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPED 207
D + G+++ ++ ++ G + + + K++VG + + T ++
Sbjct: 78 E--DTHVINGKQVEIKRTIPKGAGGNQSKDIKTK-----------KIFVGGIPSTVTEDE 124
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS 251
++ FA++GNV ++++D + R R + F+ + SE D +S
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L D L+ +F G +A+V R+ Q+G S+G ++ + +A+ +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP-HKLYVGNLAMSATPEDVR 209
+G + E R N + + RR E P H ++VG+LA T +
Sbjct: 142 NGAPMPSSEQAFRL---------NWAQLGAGERRQA--EGPEHTVFVGDLAPDVTDHMLT 190
Query: 210 YLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFC 258
F A + +V +++ D GR + Y F+ + E E+ AM+ ++C
Sbjct: 191 ETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYC 240
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS- 251
KL++G L+ +R FA FG+V +++ D + GR R + F+++ E AA+S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 252 LNGTEFCGRKIVVRQGVDRES 272
++G E GR I V DR S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS- 251
KL++G L+ +R FA FG+V +++ D + GR R + F+++ E AA+S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 252 LNGTEFCGRKIVVRQGVDRES 272
++G E GR I V DR S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS- 251
KL++G L+ +R FA FG+V +++ D + GR R + F+++ E AA+S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 252 LNGTEFCGRKIVVRQGVDRES 272
++G E GR I V DR S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS- 251
KL++G L+ +R FA FG+V +++ D + GR R + F+++ E AA+S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 252 LNGTEFCGRKIVVRQGVDRES 272
++G E GR I V DR S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS- 251
++YVGNL+ + T + +R F+ +GNV +++D R R + F++Y S E +AA+S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 252 LNGTEFCGRKIVVR 265
++G E GR++ V+
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 88 PTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAV 147
T VYV NL + + L F +G ++ A V R + S+G +VT SS A+ AV
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 148 SALDGLDVGGREMRVRF 164
S +DG ++ GR + V+
Sbjct: 62 SGMDGKELNGRRVSVKL 78
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/164 (17%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 88 PTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAV 147
P ++++ L + F +G I + + R +G+ +G ++T + +
Sbjct: 18 PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 148 SALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPED 207
D + G+++ ++ ++ G + + + K++VG + + T ++
Sbjct: 78 E--DTHVINGKQVEIKRTIPKGAGGNQSKDIKTK-----------KIFVGGIPSTVTEDE 124
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS 251
++ FA++GNV ++++D + R R + F+ + SE D +S
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 28/158 (17%)
Query: 114 TIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGR 173
+I+ ++CR S C +++S +V AK AV R+ V F+ +
Sbjct: 78 SIVYNQLCR------SDKC--ISLSEVVEAKKAVP---------RDDHVVFN-------K 113
Query: 174 NLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRR 233
+ ++ SP + K++VG LA S T + + FA+FG + V ++ D + R R
Sbjct: 114 SNSSLQGSPGPS----NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPR 169
Query: 234 AYAFISYLSERERDAAMSLNGTEFCGRKIVVRQGVDRE 271
+ FISY SE D + E G+ + V+ V ++
Sbjct: 170 GFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKD 207
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EV++ LPR E L + G I + + SG+SKG A+V + A+ A+
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L + G+ +R S ET N +L++GN+ + T ++
Sbjct: 176 ELHSKEFKGKTIRCSLS----------ETKN-------------RLFIGNIPKNWTEDEF 212
Query: 209 RYLFARFG-NVASVRLLQD-LKQGRRRAYAFISYLS 242
R + G V ++ L++D R R +AF+ Y +
Sbjct: 213 RKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYN 248
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EV++ LPR E L + G I + + SG+SKG A+V + A+ A+
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L + G+ +R S ET N +L++GN+ + T ++
Sbjct: 176 ELHSKEFKGKTIRCSLS----------ETKN-------------RLFIGNIPKNWTEDEF 212
Query: 209 RYLFARFG-NVASVRLLQD-LKQGRRRAYAFISYLS 242
R + G V ++ L++D R R +AF+ Y +
Sbjct: 213 RKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYN 248
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 194 LYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLS-ERERDAAMSL 252
LYV NL S T D+ LF+ FG VA V +L+D + R AF+ Y+S E AA S+
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 253 NGTEFCGRKIVVRQGVD 269
+ GRK+ V D
Sbjct: 119 DAKILNGRKLTVSIAAD 135
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 47/74 (63%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ N+PR + ++L F+P G ++SA+V +G SK +++ S +A+NA++ +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 151 DGLDVGGREMRVRF 164
+G + G++++V+
Sbjct: 392 NGCQLSGKKLKVQL 405
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSL 252
KLYV ++ +AT D+R +F ++GNV + L +D G R AY FI Y E +AA++
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 253 NGTEF 257
+F
Sbjct: 171 LTEQF 175
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 47/74 (63%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ N+PR + ++L F+P G ++SA+V +G SK +++ S +A+NA++ +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 151 DGLDVGGREMRVRF 164
+G + G++++V+
Sbjct: 401 NGCQLSGKKLKVQL 414
>AT4G24270.2 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 |
chr4:12581765-12587293 REVERSE LENGTH=817
Length = 817
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 176 ETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAY 235
ET ++ P + Y ++ NL++ A ED+R F G V S+R+L G+ R
Sbjct: 635 ETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGL 694
Query: 236 AFISYLSERERDAAMSLNGTEFCGRKIVV 264
A+ ++ + AA++ N F G+KI +
Sbjct: 695 AYADFVDDEHLAAAIAKNRKMFFGKKISI 723
>AT4G24270.1 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 |
chr4:12581765-12587293 REVERSE LENGTH=816
Length = 816
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 176 ETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAY 235
ET ++ P + Y ++ NL++ A ED+R F G V S+R+L G+ R
Sbjct: 635 ETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGL 694
Query: 236 AFISYLSERERDAAMSLNGTEFCGRKIVV 264
A+ ++ + AA++ N F G+KI +
Sbjct: 695 AYADFVDDEHLAAAIAKNRKMFFGKKISI 723
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSL 252
K++VG LA S T + + FA+FG + V ++ D + R R + FISY SE D +
Sbjct: 47 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 106
Query: 253 NGTEFCGRKIVVRQGVDRE 271
E G+ + V+ V ++
Sbjct: 107 TFHELNGKMVEVKLAVPKD 125
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
++V +L D L F + S +V R+ Q+ +S+G +V S +A+ A+ +
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
G+ + E R N + ++ +R ++VG+LA + +
Sbjct: 181 SGVTMPNAEQPFRL---------NWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLE 231
Query: 211 LFA-RFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFC 258
FA R+ +V +++ D GR + Y F+ + E ER AM+ FC
Sbjct: 232 TFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFC 280
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
+ ++ +VG LA + + FA++G+V +++ D + GR R + F+++ E+ +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 248 AAMSLNGTEFCGRKIVVRQ 266
A +NG + GR I V +
Sbjct: 65 AIEGMNGQDLDGRSITVNE 83
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
+ ++ +VG LA + + FA++G+V +++ D + GR R + F+++ E+ +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 248 AAMSLNGTEFCGRKIVVRQ 266
A +NG + GR I V +
Sbjct: 65 AIEGMNGQDLDGRSITVNE 83
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 190 APHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYL-SERERDA 248
+ KL++G +A S + +R F ++G V R++ D + GR R + F+++ SE A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 249 AMSLNGTEFCGRKIVVRQGVDR 270
+L+G + GR + V DR
Sbjct: 98 IQALDGRDLHGRVVKVNYANDR 119
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+++++ + S D + L F +G ++ V ++G S+G +VT +S +A +A+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 149 ALDGLDVGGREMRVRFS 165
ALDG D+ GR ++V ++
Sbjct: 100 ALDGRDLHGRVVKVNYA 116
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
E ++ +VG LA + ED++ F++FG+V +++ D + GR R + F+++ E+ RD
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 248 AAMSLN 253
A +N
Sbjct: 63 AIEEMN 68
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 80 QVNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS 139
Q EG +++ N+PR ++L F+ G ++SA+V +G SK +V+ S
Sbjct: 342 QTEGPEG--ANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDS 399
Query: 140 IVSAKNAVSALDGLDVGGREMRVRFSVEVN 169
+A+NA+ ++G +GG++++V+ + N
Sbjct: 400 QAAAQNAIDMMNGRHLGGKKLKVQLKRDSN 429
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 80 QVNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS 139
Q + E + VYV L E L +F G +++ V + + + ++ S
Sbjct: 16 QHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRS 75
Query: 140 IVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNL 199
A A+ L+ + + G+ +RV + S ++++ A L++GNL
Sbjct: 76 EEDADYAIKVLNMIKLHGKPIRVNKA--------------SQDKKSLDVGA--NLFIGNL 119
Query: 200 AMSATPEDVRYLFARFGNVAS-VRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEF 257
+ + F+ FG +AS ++++D G R + FISY S DAA+ S+ G
Sbjct: 120 DPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYL 179
Query: 258 CGRKIVVRQGVDRES 272
R+I V +++
Sbjct: 180 SNRQITVSYAYKKDT 194
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS- 251
KLY+G L+ ++ F+ F V R++ + GR R Y F++++SE ++A+S
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 252 LNGTEFCGRKIVVRQGVDRES 272
+NG E G I V D S
Sbjct: 92 MNGQELNGFNISVNVAKDWPS 112
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS- 251
KL+VG L+ ++ F FG V ++ D + GR R + F+S+ E + A+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 252 LNGTEFCGRKIVVRQGVDRES 272
++G E GR+I V +R S
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
++++V L D L F G + A V ++G S+G +V+ S SA NA+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 149 ALDGLDVGGREMRVRFSVE 167
+DG ++ GR++RV + E
Sbjct: 95 EMDGKELNGRQIRVNLATE 113
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS- 251
KL+VG L+ ++ F FG V ++ D + GR R + F+S+ E + A+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 252 LNGTEFCGRKIVVRQGVDRES 272
++G E GR+I V +R S
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
++++V L D L F G + A V ++G S+G +V+ S SA NA+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 149 ALDGLDVGGREMRVRFSVE 167
+DG ++ GR++RV + E
Sbjct: 95 EMDGKELNGRQIRVNLATE 113
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 25/154 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVY+ +P L G + + R SG+ KG A+VT S A A+
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ D G+ R++ S +A H+L++GN+ + D+
Sbjct: 152 TLNNTDFRGK--RIKCSTT---------------------QAKHRLFLGNVPRNWMESDI 188
Query: 209 RYLFARFG-NVASVRLLQDLKQ-GRRRAYAFISY 240
+ R G V V L ++ + GR R +AFI Y
Sbjct: 189 KKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 25/154 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVY+ +P L G + + R SG+ KG A+VT S A A+
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ D G+ R++ S +A H+L++GN+ + D+
Sbjct: 152 TLNNTDFRGK--RIKCSTT---------------------QAKHRLFLGNVPRNWMESDI 188
Query: 209 RYLFARFG-NVASVRLLQDLKQ-GRRRAYAFISY 240
+ R G V V L ++ + GR R +AFI Y
Sbjct: 189 KKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
E++V +L + E L +F G + + ++ Q+ +SKG A++ +++ AK AV
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVR 209
L + G++ V S + + L+VGN+ TPE +R
Sbjct: 275 LKSPMINGKKCGVTASQDND-----------------------TLFVGNICKIWTPEALR 311
Query: 210 YLFARFG--NVASVRLLQDLKQ-GRRRAYAFISYLS 242
+G N+ + L++D R YAF+ + S
Sbjct: 312 EKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSS 347