Miyakogusa Predicted Gene
- Lj1g3v5060520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v5060520.1 Non Chatacterized Hit- tr|I1NCQ2|I1NCQ2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41436 PE,85.6,0,RNA
recognition motif,RNA recognition motif domain, eukaryote; RNA
recognition motif,RNA recognition,CUFF.33957.1
(483 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 547 e-156
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 547 e-156
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 526 e-149
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 526 e-149
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 366 e-101
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 366 e-101
AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 136 3e-32
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 109 5e-24
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 90 3e-18
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 85 1e-16
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 85 1e-16
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 83 3e-16
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 83 4e-16
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 83 4e-16
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 83 4e-16
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 81 1e-15
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 77 2e-14
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 77 2e-14
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 76 4e-14
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 76 5e-14
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 76 6e-14
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 75 1e-13
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 2e-13
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 74 2e-13
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 3e-13
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 74 3e-13
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 68 1e-11
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 68 2e-11
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 67 2e-11
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 3e-11
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 3e-11
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 66 5e-11
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 8e-11
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 8e-11
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 8e-11
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 8e-11
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 65 1e-10
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 65 1e-10
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 65 1e-10
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 6e-10
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 62 8e-10
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 62 1e-09
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 4e-09
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 59 5e-09
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 6e-09
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 6e-09
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-09
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-09
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 58 1e-08
AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 58 2e-08
AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 58 2e-08
AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850077-1... 58 2e-08
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 57 2e-08
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 2e-08
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 57 3e-08
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 56 4e-08
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 56 5e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 5e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 56 5e-08
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-08
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-08
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-08
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 55 9e-08
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 55 9e-08
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-07
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 54 2e-07
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 54 3e-07
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 54 3e-07
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 54 3e-07
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 53 5e-07
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 5e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 53 5e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 53 5e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 53 5e-07
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 5e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-07
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 52 9e-07
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 52 1e-06
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 52 1e-06
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 52 1e-06
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 51 1e-06
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 51 1e-06
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 1e-06
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 3e-06
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 50 4e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 5e-06
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 50 5e-06
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 8e-06
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 49 8e-06
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 9e-06
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 9e-06
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 49 9e-06
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/400 (67%), Positives = 328/400 (82%), Gaps = 7/400 (1%)
Query: 62 DGKDQLAEAEKGDIDTEFVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDAC 121
D ++++AE + ID E ++D + P ID+++++K+ LL+LPPHGSEVFIGGLPRD
Sbjct: 69 DVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVG 128
Query: 122 EDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLR 181
E+DLR+LCE +G+I EVRLMKDRD+GD+KGYAFVAFKTK+ AQKAIE++H+KEFKGKT+R
Sbjct: 129 EEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIR 188
Query: 182 CSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYN 241
CSLSETK+RLFIGN+PK TEDEFRK ++ VGPGVE+IELIKDP N ++NRGFAFVLYYN
Sbjct: 189 CSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYN 248
Query: 242 NACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTDQL 300
NACADYSRQKM S+FKL GN PTVTWADPK+SP+HS A++QVKALYVKNIPEN +T+QL
Sbjct: 249 NACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQL 308
Query: 301 KELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAK 360
KELF+RHGEVTK+V PPGK GGKRDFGF+H+AERSSALKAVK+TE+YE++GQ LEVVLAK
Sbjct: 309 KELFQRHGEVTKIVTPPGK-GGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
Query: 361 PQAEKRPDAYAFNPGVHPNHLP--HAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPM 418
PQAE++ D +++ G P P H G G A ++ QPMIYGRG M
Sbjct: 368 PQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAM 427
Query: 419 PAGMQMVPMVLPDGRIGYVLQQPGVQVPAA---RPRRNER 455
P GMQMVPM+LPDGR+GYVLQQPG+ + AA RPRRN+R
Sbjct: 428 PTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDR 467
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/400 (67%), Positives = 328/400 (82%), Gaps = 7/400 (1%)
Query: 62 DGKDQLAEAEKGDIDTEFVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDAC 121
D ++++AE + ID E ++D + P ID+++++K+ LL+LPPHGSEVFIGGLPRD
Sbjct: 69 DVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVG 128
Query: 122 EDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLR 181
E+DLR+LCE +G+I EVRLMKDRD+GD+KGYAFVAFKTK+ AQKAIE++H+KEFKGKT+R
Sbjct: 129 EEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIR 188
Query: 182 CSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYN 241
CSLSETK+RLFIGN+PK TEDEFRK ++ VGPGVE+IELIKDP N ++NRGFAFVLYYN
Sbjct: 189 CSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYN 248
Query: 242 NACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTDQL 300
NACADYSRQKM S+FKL GN PTVTWADPK+SP+HS A++QVKALYVKNIPEN +T+QL
Sbjct: 249 NACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQL 308
Query: 301 KELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAK 360
KELF+RHGEVTK+V PPGK GGKRDFGF+H+AERSSALKAVK+TE+YE++GQ LEVVLAK
Sbjct: 309 KELFQRHGEVTKIVTPPGK-GGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
Query: 361 PQAEKRPDAYAFNPGVHPNHLP--HAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPM 418
PQAE++ D +++ G P P H G G A ++ QPMIYGRG M
Sbjct: 368 PQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAM 427
Query: 419 PAGMQMVPMVLPDGRIGYVLQQPGVQVPAA---RPRRNER 455
P GMQMVPM+LPDGR+GYVLQQPG+ + AA RPRRN+R
Sbjct: 428 PTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDR 467
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 526 bits (1356), Expect = e-149, Method: Compositional matrix adjust.
Identities = 261/400 (65%), Positives = 320/400 (80%), Gaps = 15/400 (3%)
Query: 62 DGKDQLAEAEKGDIDTEFVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDAC 121
D ++++AE + ID E ++D + P ID+++++K+ LL+LPPHGSEVFIGGLPRD
Sbjct: 49 DVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVG 108
Query: 122 EDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLR 181
E+DLR+LCE +G+I EVRLMKDRD+GD+KGYAFVAFKTK+ AQKAIE++H+KEFKGKT+R
Sbjct: 109 EEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIR 168
Query: 182 CSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYN 241
CSLSETK+RLFIGN+PK TEDEFRK ++ VGPG DP N ++NRGFAFVLYYN
Sbjct: 169 CSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPG--------DPTNTTRNRGFAFVLYYN 220
Query: 242 NACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTDQL 300
NACADYSRQKM S+FKL GN PTVTWADPK+SP+HS A++QVKALYVKNIPEN +T+QL
Sbjct: 221 NACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQL 280
Query: 301 KELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAK 360
KELF+RHGEVTK+V PPGK GGKRDFGF+H+AERSSALKAVK+TE+YE++GQ LEVVLAK
Sbjct: 281 KELFQRHGEVTKIVTPPGK-GGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 339
Query: 361 PQAEKRPDAYAFNPGVHPNHLP--HAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPM 418
PQAE++ D +++ G P P H G G A ++ QPMIYGRG M
Sbjct: 340 PQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAM 399
Query: 419 PAGMQMVPMVLPDGRIGYVLQQPGVQVPAA---RPRRNER 455
P GMQMVPM+LPDGR+GYVLQQPG+ + AA RPRRN+R
Sbjct: 400 PTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDR 439
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/401 (65%), Positives = 321/401 (80%), Gaps = 9/401 (2%)
Query: 62 DGKDQLAEAEKGDIDTEFVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDAC 121
D ++++AE + ID E ++D + P ID+++++K+ LL+LPPHGSEVFIGGLPRD
Sbjct: 69 DVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVG 128
Query: 122 EDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGK-TL 180
E+DLR+LCE +G+I EVRLMKDRD+GD+KGYAFVAFKTK+ AQKAIE++H+KEFK T
Sbjct: 129 EEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKASSTA 188
Query: 181 RCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYY 240
CSLS +RLFIGN+PK TEDEFRK ++ VGPGVE+IELIKDP N ++NRGFAFVLYY
Sbjct: 189 NCSLS-LSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYY 247
Query: 241 NNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTDQ 299
NNACADYSRQKM S+FKL GN PTVTWADPK+SP+HS A++QVKALYVKNIPEN +T+Q
Sbjct: 248 NNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQ 307
Query: 300 LKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLA 359
LKELF+RHGEVTK+V PPGK GGKRDFGF+H+AERSSALKAVK+TE+YE++GQ LEVVLA
Sbjct: 308 LKELFQRHGEVTKIVTPPGK-GGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLA 366
Query: 360 KPQAEKRPDAYAFNPGVHPNHLP--HAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGP 417
KPQAE++ D +++ G P P H G G A ++ QPMIYGRG
Sbjct: 367 KPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGA 426
Query: 418 MPAGMQMVPMVLPDGRIGYVLQQPGVQVPAA---RPRRNER 455
MP GMQMVPM+LPDGR+GYVLQQPG+ + AA RPRRN+R
Sbjct: 427 MPTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDR 467
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/356 (49%), Positives = 257/356 (72%), Gaps = 11/356 (3%)
Query: 95 KQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAF 154
K++H ELLALPPHGSEV++GG+P DA E DL+ C +G++ EVR+M+++D+GD KGYAF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 155 VAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGP 214
V F++K+ A +AI+ ++N +F+GK ++CS ++ KHRLF+GNVP+ E + +KA + +GP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 215 GVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWAD-PKN 273
GV+ +EL K+PQN +NRGFAF+ YYN+ACA+YS+QKMS+ SFKL N PTV+WA+
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 257
Query: 274 SPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD--FGFIHF 331
S++SQVKALY+KN+P ++T ++LK LF HG++ KVV+PP K GK D +GF+H+
Sbjct: 258 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKP-GKEDSRYGFVHY 316
Query: 332 AERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFN----PGVHPNHLPHAXXX 387
AER+S ++A+K TE+YEIDG +L+ LAKPQA+++ + + PN+ P
Sbjct: 317 AERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPP--LLS 374
Query: 388 XXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGV 443
G+GA+ AY QP+++ G GM M+P++LPDGRIGYVLQQPG+
Sbjct: 375 YGMAPSPFGALGGFGAS-AYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGL 429
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/356 (49%), Positives = 257/356 (72%), Gaps = 11/356 (3%)
Query: 95 KQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAF 154
K++H ELLALPPHGSEV++GG+P DA E DL+ C +G++ EVR+M+++D+GD KGYAF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 155 VAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGP 214
V F++K+ A +AI+ ++N +F+GK ++CS ++ KHRLF+GNVP+ E + +KA + +GP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 215 GVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWAD-PKN 273
GV+ +EL K+PQN +NRGFAF+ YYN+ACA+YS+QKMS+ SFKL N PTV+WA+
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 257
Query: 274 SPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD--FGFIHF 331
S++SQVKALY+KN+P ++T ++LK LF HG++ KVV+PP K GK D +GF+H+
Sbjct: 258 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKP-GKEDSRYGFVHY 316
Query: 332 AERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFN----PGVHPNHLPHAXXX 387
AER+S ++A+K TE+YEIDG +L+ LAKPQA+++ + + PN+ P
Sbjct: 317 AERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPP--LLS 374
Query: 388 XXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGV 443
G+GA+ AY QP+++ G GM M+P++LPDGRIGYVLQQPG+
Sbjct: 375 YGMAPSPFGALGGFGAS-AYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGL 429
>AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:10342024-10342997 REVERSE LENGTH=180
Length = 180
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 109/195 (55%), Gaps = 57/195 (29%)
Query: 252 MSSSSFKLYGNTPTVTWADPKNSPD-HSASSQVKALYVKNIPENVTTDQLKELFRRHGEV 310
MS+ SFKL N PTV+WA+ ++ + S++SQVKALY+KN+P ++T ++LK LF HG++
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 311 TKVVMPPGKIGGKRD--FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPD 368
KVV+PP K GK D +GF+H+AER+S ++A+K TE+YEID
Sbjct: 61 LKVVIPPAK-PGKEDSRYGFVHYAERTSVMRALKNTERYEID------------------ 101
Query: 369 AYAFNPGVHPNHLPHAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMV 428
A AY QP+++ G GM M+P++
Sbjct: 102 -----------------------------------ASAYSQPLMHAGGHAAGGMSMMPIM 126
Query: 429 LPDGRIGYVLQQPGV 443
LPDGRI YVLQQPG+
Sbjct: 127 LPDGRIRYVLQQPGL 141
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 140/264 (53%), Gaps = 4/264 (1%)
Query: 90 IDEDEKQKHDELLALPPHGS-EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGD 148
+D +E++ HD L E+F+G L + A E+DL+++ +G++ EVR++K+ T
Sbjct: 194 VDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKK 253
Query: 149 NKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKA 208
+KG AF+ F T E+A++A++++ + GK + S+ LF+GN+ K T + R+
Sbjct: 254 SKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREK 313
Query: 209 VDGVG-PGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT-V 266
+ G ++ I L++D N + NRG+AF+ + + + A + +++ P V
Sbjct: 314 LKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKV 373
Query: 267 TWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR-D 325
++ D + +QVK +++ + + +++++L + +G++ KV + +R D
Sbjct: 374 SFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKD 433
Query: 326 FGFIHFAERSSALKAVKETEKYEI 349
FGF+ F +A+ K E+
Sbjct: 434 FGFVTFDTHEAAVSCAKFINNSEL 457
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 152/374 (40%), Gaps = 44/374 (11%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+ L + L E G I+ ++ D G ++GY FV F T++ A+ AIE +
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 171 HNKE------FKGKTLRCSLSETK------HRLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
+ K F G LR E+ +++ N+ + T+DE + G + S
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYG-SISS 253
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSF-----------KLYGNTPTVT 267
+++D K+R F FV + N A + + ++ F K ++
Sbjct: 254 AVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS 311
Query: 268 WADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFG 327
+ S D LYVKN+ + VT ++L+ELF G +T + G + G
Sbjct: 312 RRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSG 371
Query: 328 FIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHLPHAXXX 387
F+ F+ S A + + E + G+ L V LA+ + E+R A + P +P
Sbjct: 372 FVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGPR 431
Query: 388 XXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPA-----GMQMVPMVLPDGR---IGYVLQ 439
G AP Q + YG+GP P G P ++P R G +
Sbjct: 432 MPIFT---------GGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGGPMM 482
Query: 440 QPGVQVPAARPRRN 453
QPG Q P RR+
Sbjct: 483 QPGQQGPRPGGRRS 496
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 125/266 (46%), Gaps = 16/266 (6%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
+++G L + + L + + ++ VR+ +D T + GY +V + ++A+KA++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 170 IHNKEFKGKTLRCSLSETKH--------RLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
++ GK +R + S LF+ N+ K+V +A G G + S ++
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKV 165
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASS 281
D + ++RG+ FV + A + +K++ K+ + + SA+
Sbjct: 166 ATD--HMGQSRGYGFVQFDTEDSAKNAIEKLNG---KVLNDKQIFVGPFLRKEERESAAD 220
Query: 282 QVK--ALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALK 339
++K +YVKN+ E T D+LK F ++G ++ V+ G R FGF++F A +
Sbjct: 221 KMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAAR 280
Query: 340 AVKETEKYEIDGQVLEVVLAKPQAEK 365
AV+ + D + V A+ ++E+
Sbjct: 281 AVEALNGKKFDDKEWYVGKAQKKSER 306
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 139/335 (41%), Gaps = 85/335 (25%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++ + G+P D D L++ GD+ + +MKDR TG ++G+ +V F + E+A+ A++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 170 IHNKEFKG-KTLRCSLSETKH----------RLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
H F G + L ++ K R+F+ +P +V+E +FR + G +
Sbjct: 64 EH---FLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGE-ITD 119
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDH- 277
+ + KD N ++RG F+ + + AD S + + + L G T V A PK DH
Sbjct: 120 LYMPKD-YNSKQHRGIGFITF---SSAD-SVEDLMEDTHDLGGTTVAVDRATPKED-DHP 173
Query: 278 ---------------------------------SASSQVKAL------------------ 286
SA+++ AL
Sbjct: 174 PRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEP 233
Query: 287 ---------YVKNIPENVTTDQLKELFRRHGEVTKVVMPPG-KIGGKRDFGFIHFAERSS 336
+V +P+ + D L++ F R G + +P K G R FGF+ FAE
Sbjct: 234 TTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGV 293
Query: 337 ALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYA 371
A + + + +EI GQ + + A P E P A A
Sbjct: 294 ADRVARRS--HEICGQEVAIDSATPLDEAGPSAGA 326
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 10/181 (5%)
Query: 188 KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADY 247
+ +L + +P + D + + G +E ++KD ++ ++RGF +V + A A+
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFG-DLEDCIVMKD-RSTGRSRGFGYVTF---ASAED 56
Query: 248 SRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRH 307
++ + F L V A PK A +V ++V IP +V+ + F R+
Sbjct: 57 AKNALKGEHF-LGNRILEVKVATPKEEMRQPAK-KVTRIFVARIPSSVSESDFRSHFERY 114
Query: 308 GEVTKVVMPPGKIGGK-RDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
GE+T + MP + R GFI F+ S +++T +++ G + V A P+ +
Sbjct: 115 GEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT--HDLGGTTVAVDRATPKEDDH 172
Query: 367 P 367
P
Sbjct: 173 P 173
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 139/335 (41%), Gaps = 85/335 (25%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++ + G+P D D L++ GD+ + +MKDR TG ++G+ +V F + E+A+ A++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 170 IHNKEFKG-KTLRCSLSETKH----------RLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
H F G + L ++ K R+F+ +P +V+E +FR + G +
Sbjct: 64 EH---FLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGE-ITD 119
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDH- 277
+ + KD N ++RG F+ + + AD S + + + L G T V A PK DH
Sbjct: 120 LYMPKD-YNSKQHRGIGFITF---SSAD-SVEDLMEDTHDLGGTTVAVDRATPKED-DHP 173
Query: 278 ---------------------------------SASSQVKAL------------------ 286
SA+++ AL
Sbjct: 174 PRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEP 233
Query: 287 ---------YVKNIPENVTTDQLKELFRRHGEVTKVVMPPG-KIGGKRDFGFIHFAERSS 336
+V +P+ + D L++ F R G + +P K G R FGF+ FAE
Sbjct: 234 TTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGV 293
Query: 337 ALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYA 371
A + + + +EI GQ + + A P E P A A
Sbjct: 294 ADRVARRS--HEICGQEVAIDSATPLDEAGPSAGA 326
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 10/181 (5%)
Query: 188 KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADY 247
+ +L + +P + D + + G +E ++KD ++ ++RGF +V + A A+
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFG-DLEDCIVMKD-RSTGRSRGFGYVTF---ASAED 56
Query: 248 SRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRH 307
++ + F L V A PK A +V ++V IP +V+ + F R+
Sbjct: 57 AKNALKGEHF-LGNRILEVKVATPKEEMRQPAK-KVTRIFVARIPSSVSESDFRSHFERY 114
Query: 308 GEVTKVVMPPGKIGGK-RDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
GE+T + MP + R GFI F+ S +++T +++ G + V A P+ +
Sbjct: 115 GEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT--HDLGGTTVAVDRATPKEDDH 172
Query: 367 P 367
P
Sbjct: 173 P 173
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 131/291 (45%), Gaps = 37/291 (12%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+FI L L E G IL ++ D TG +KGY FV F+ +E AQ AI+ +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 171 HN------KEFKGKTLR--------CSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGV 216
+ + F G +R + + +++ N+PK + EDE RK G +
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGV-I 255
Query: 217 ESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPD 276
S +++D S R F FV + A + +KM+ S L + V A K+ +
Sbjct: 256 SSAVVMRDQSGNS--RCFGFVNFECTEAAASAVEKMNGIS--LGDDVLYVGRAQKKSERE 311
Query: 277 HSA-------------SSQVKALYVKNIPENVTTDQLKELFRRHGEVT--KVVMPPGKIG 321
SQ LY+KN+ ++V ++LKE+F +G VT KV++ P G
Sbjct: 312 EELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ--G 369
Query: 322 GKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAF 372
R FGF+ ++ AL+A+ E I + L + LA+ + ++R A
Sbjct: 370 MSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQAL 420
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 28/160 (17%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P + V++ LP++ ED+LR+ G I +M+D+ +G+++ + FV F+ E A
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAAS 284
Query: 166 AIEDIHNKEFKGKTLRCSLSETKH------------------------RLFIGNVPKTVT 201
A+E ++ L ++ K L++ N+ +V
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVD 344
Query: 202 EDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYN 241
+++ ++ G V S +++ +PQ S RGF FV Y N
Sbjct: 345 DEKLKEMFSEYG-NVTSSKVMLNPQGMS--RGFGFVAYSN 381
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 26/272 (9%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +++G L + + L + MG ++ VR+ +D T + GY +V F ++A +AI+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 169 DIHNKEFKGKTLRCSLSETKHR-----------LFIGNVPKTVTEDEFRKAVDGVGPGVE 217
+++ GK +R S HR +FI N+ +++ G +
Sbjct: 96 ELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIV 151
Query: 218 SIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADP---KNS 274
S ++ D SK G+ FV Y N A + +K++ + N V + P +
Sbjct: 152 SCKVAVDSSGQSK--GYGFVQYANEESAQKAIEKLNG----MLLNDKQV-YVGPFLRRQE 204
Query: 275 PDHSAS-SQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAE 333
D +A+ ++ +YVKN+ E+ T D LK F +G++T V+ G + FGF++F
Sbjct: 205 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFEN 264
Query: 334 RSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
A +AV+ ++ D + V A+ ++E+
Sbjct: 265 ADDAARAVESLNGHKFDDKEWYVGRAQKKSER 296
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 35/283 (12%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+FI L L + G+I+ ++ D +G +KGY FV + +E AQKAIE +
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 171 HN------KEFKGKTLR-----CSLSETKH-RLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
+ + + G LR + ++TK +++ N+ ++ T+D+ + A G + S
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITS 243
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPK------ 272
++KD + K++GF FV + N D +R S + K V A K
Sbjct: 244 AVVMKDGEG--KSKGFGFVNFEN--ADDAARAVESLNGHKFDDKEWYVGRAQKKSERETE 299
Query: 273 -------NSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVT--KVVMPPGKIGGK 323
N + + Q LYVKN+ +++ ++LKE+F G VT KV+ P G
Sbjct: 300 LRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN--GTS 357
Query: 324 RDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
+ GF+ FA A +A+ + I+ + L V +A+ + ++R
Sbjct: 358 KGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR 400
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 128/283 (45%), Gaps = 33/283 (11%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VFI L L E G IL ++ D G +KGY FV F+ +E AQ AI+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 171 HN------KEFKGKTLRC---SLSETK-----HRLFIGNVPKTVTEDEFRKAVDGVGPGV 216
+ + F G +R + SE+ +++ N+PK +T+DE +K G +
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG-DI 265
Query: 217 ESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPD 276
S ++KD S R F FV + + A + +KM+ S L + V A K+ +
Sbjct: 266 SSAVVMKDQSGNS--RSFGFVNFVSPEAAAVAVEKMNGIS--LGEDVLYVGRAQKKSDRE 321
Query: 277 HSASS-------------QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGK 323
Q LY+KN+ ++V ++LKE+F +G VT + G
Sbjct: 322 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 381
Query: 324 RDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
R FGF+ ++ AL A+KE I + L V LA+ + E++
Sbjct: 382 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 424
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 123/269 (45%), Gaps = 19/269 (7%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S +++G L E L +L + + +R+ +D T + GYA+V F E+A +A+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 169 DIHNKEFKGKTLRCSLSET--------KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIE 220
++ + + +R LS K +FI N+ ++ + G + S +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT-ILSCK 176
Query: 221 LIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFK----LYGNTPTVTWADPKNSPD 276
+ D SK G+ FV + A + K++ G+ V D S +
Sbjct: 177 VAMDVVGRSK--GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHF--VRRQDRARS-E 231
Query: 277 HSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSS 336
A +YVKN+P+ +T D+LK+ F ++G+++ V+ + G R FGF++F +
Sbjct: 232 SGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEA 291
Query: 337 ALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
A AV++ + VL V A+ ++++
Sbjct: 292 AAVAVEKMNGISLGEDVLYVGRAQKKSDR 320
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 128/283 (45%), Gaps = 33/283 (11%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VFI L L E G IL ++ D G +KGY FV F+ +E AQ AI+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 171 HN------KEFKGKTLRC---SLSETK-----HRLFIGNVPKTVTEDEFRKAVDGVGPGV 216
+ + F G +R + SE+ +++ N+PK +T+DE +K G +
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG-DI 265
Query: 217 ESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPD 276
S ++KD S R F FV + + A + +KM+ S L + V A K+ +
Sbjct: 266 SSAVVMKDQSGNS--RSFGFVNFVSPEAAAVAVEKMNGIS--LGEDVLYVGRAQKKSDRE 321
Query: 277 HSASS-------------QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGK 323
Q LY+KN+ ++V ++LKE+F +G VT + G
Sbjct: 322 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 381
Query: 324 RDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
R FGF+ ++ AL A+KE I + L V LA+ + E++
Sbjct: 382 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 424
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 123/269 (45%), Gaps = 19/269 (7%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S +++G L E L +L + + +R+ +D T + GYA+V F E+A +A+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 169 DIHNKEFKGKTLRCSLSET--------KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIE 220
++ + + +R LS K +FI N+ ++ + G + S +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT-ILSCK 176
Query: 221 LIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFK----LYGNTPTVTWADPKNSPD 276
+ D SK G+ FV + A + K++ G+ V D S +
Sbjct: 177 VAMDVVGRSK--GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHF--VRRQDRARS-E 231
Query: 277 HSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSS 336
A +YVKN+P+ +T D+LK+ F ++G+++ V+ + G R FGF++F +
Sbjct: 232 SGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEA 291
Query: 337 ALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
A AV++ + VL V A+ ++++
Sbjct: 292 AAVAVEKMNGISLGEDVLYVGRAQKKSDR 320
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 18/268 (6%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G L D E DL + ++ V L ++ TG + YA++ F + A A+ +
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 171 HNKEFKGKTLRCSLSE--TKHR---------LFIGNVPKTVTEDEFRKAVDGVGPGVESI 219
++ + KGK +R S+ +R L++ N+ ++T + G SI
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFG----SI 138
Query: 220 ELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSA 279
K + +++GF FV + A +R + S +YG V K+ A
Sbjct: 139 LSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGS--MVYGKKLFVAKFINKDERAAMA 196
Query: 280 SSQ-VKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSAL 338
+Q +YVKN+ E VT D L LF ++G V+ VV+ +G R FGF++F +A
Sbjct: 197 GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAK 256
Query: 339 KAVKETEKYEIDGQVLEVVLAKPQAEKR 366
KA++ ++ + L V A + E+R
Sbjct: 257 KAMESLCGLQLGSKKLFVGKALKKDERR 284
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 125/294 (42%), Gaps = 57/294 (19%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +++ L L + P G IL +++++ G +KG+ FV F T++ A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARS 169
Query: 169 DIHNKEFKGKTL----------RCSLS--ETKHRLFIGNVPKTVTEDEFRKAVDGVGPGV 216
+H GK L R +++ + +++ N+ +TVT+D G V
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT-V 228
Query: 217 ESIELIKDPQNPSKNRGFAFV------------------------LYYNNACADYSRQKM 252
S+ +++D ++RGF FV L+ A R++M
Sbjct: 229 SSVVVMRDGMG--RSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREM 286
Query: 253 SSSSFK-LYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVT 311
F + P + W++ LYVKN+ E++ +L+E+F +G++
Sbjct: 287 LKQKFSDNFIAKPNMRWSN---------------LYVKNLSESMNETRLREIFGCYGQIV 331
Query: 312 KVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
+ + G + FGF+ F+ + +A + + +DG+ + V +A+ + ++
Sbjct: 332 SAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 151/365 (41%), Gaps = 51/365 (13%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+FI L + L E G IL ++ D +G +KGY FV + T E AQ AI+ +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 171 HNKEFKGKTLRCSLSETKHRL--------------FIGNVPKTVTEDEFRKAVDGVGPGV 216
+ K + + H+L ++ N+ ++++++E K G
Sbjct: 194 NGMLLNDK--QVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTT 251
Query: 217 ESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSF-----------KLYGNTPT 265
+ +++D + K++GF FV + N+ A + ++ +F K
Sbjct: 252 SCV-IMRDGEG--KSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308
Query: 266 VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
+ ++ + + SQ LYVKN+ E+VT D+L+E F G +T + G R
Sbjct: 309 LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRG 368
Query: 326 FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHLPHAX 385
GF+ F+ A +A+ E I + L V LA+ + +++ A + P ++P A
Sbjct: 369 SGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAV 428
Query: 386 XXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQV 445
G P QQ + YG+GP P ++P GY Q V
Sbjct: 429 GPRMQMYPP-------GGPPMGQQ-LFYGQGP--------PAMIPQPGFGYQQQ----LV 468
Query: 446 PAARP 450
P RP
Sbjct: 469 PGMRP 473
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 20/269 (7%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +++G L + L E G ++ VR+ +D T + GY +V + T ++A +A+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 169 DIHNKEFKGKTLRCSLS--------ETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIE 220
+++ G+ +R S +FI N+ K++ + GP + S +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163
Query: 221 LIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADP---KNSPDH 277
+ DP SK G+ FV Y + A + K++ + N V + P K D
Sbjct: 164 VAVDPSGQSK--GYGFVQYDTDEAAQGAIDKLNG----MLLNDKQV-YVGPFVHKLQRDP 216
Query: 278 SASS-QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSS 336
S + +YVKN+ E+++ ++L ++F G T V+ G + FGF++F
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDD 276
Query: 337 ALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
A +AV D + V A+ ++E+
Sbjct: 277 AARAVDALNGKTFDDKEWFVGKAQKKSER 305
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 76 DTEFVEEDGEKPPLIDEDEKQKHDELL---ALPPHGSEVFIGGLPRDACEDDLRELCEPM 132
D E+ +K + + KQK ++ L A GS +++ L +D LRE P
Sbjct: 291 DKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPF 350
Query: 133 GDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETK 188
G I ++M+D +G ++G FVAF T EEA +AI +++ K K L +L++ K
Sbjct: 351 GTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 151/365 (41%), Gaps = 51/365 (13%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+FI L + L E G IL ++ D +G +KGY FV + T E AQ AI+ +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 171 HNKEFKGKTLRCSLSETKHRL--------------FIGNVPKTVTEDEFRKAVDGVGPGV 216
+ K + + H+L ++ N+ ++++++E K G
Sbjct: 194 NGMLLNDK--QVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTT 251
Query: 217 ESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSF-----------KLYGNTPT 265
+ +++D + K++GF FV + N+ A + ++ +F K
Sbjct: 252 SCV-IMRDGEG--KSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308
Query: 266 VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
+ ++ + + SQ LYVKN+ E+VT D+L+E F G +T + G R
Sbjct: 309 LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRG 368
Query: 326 FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHLPHAX 385
GF+ F+ A +A+ E I + L V LA+ + +++ A + P ++P A
Sbjct: 369 SGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAV 428
Query: 386 XXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQV 445
G P QQ + YG+GP P ++P GY Q V
Sbjct: 429 GPRMQMYPP-------GGPPMGQQ-LFYGQGP--------PAMIPQPGFGYQQQ----LV 468
Query: 446 PAARP 450
P RP
Sbjct: 469 PGMRP 473
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 20/269 (7%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +++G L + L E G ++ VR+ +D T + GY +V + T ++A +A+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 169 DIHNKEFKGKTLRCSLS--------ETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIE 220
+++ G+ +R S +FI N+ K++ + GP + S +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163
Query: 221 LIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADP---KNSPDH 277
+ DP SK G+ FV Y + A + K++ + N V + P K D
Sbjct: 164 VAVDPSGQSK--GYGFVQYDTDEAAQGAIDKLNG----MLLNDKQV-YVGPFVHKLQRDP 216
Query: 278 SASS-QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSS 336
S + +YVKN+ E+++ ++L ++F G T V+ G + FGF++F
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDD 276
Query: 337 ALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
A +AV D + V A+ ++E+
Sbjct: 277 AARAVDALNGKTFDDKEWFVGKAQKKSER 305
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 76 DTEFVEEDGEKPPLIDEDEKQKHDELL---ALPPHGSEVFIGGLPRDACEDDLRELCEPM 132
D E+ +K + + KQK ++ L A GS +++ L +D LRE P
Sbjct: 291 DKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPF 350
Query: 133 GDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETK 188
G I ++M+D +G ++G FVAF T EEA +AI +++ K K L +L++ K
Sbjct: 351 GTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +PR A E+++R E G++LEV L+KD+ TG +G FV + T ++A +AI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 170 IHNK-EFKGKT----------LRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
+HN+ G T R + + +LF+G++ K TE E + G VE
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 239
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTP-TVTWADPK 272
+ L++D ++RG FV Y + A + ++ + N P V +A+PK
Sbjct: 240 VYLMRDEYR--QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPK 292
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 9/180 (5%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
+LF+G+VP+T TE+E R + G V + LIKD + + +G FV Y + AD +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHG-NVLEVALIKDKRT-GQQQGCCFVKYATSKDADRAI 178
Query: 250 QKMSSSSFKLYGNTPT-VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHG 308
+ + + G P V +AD + + + + K L+V ++ + T +++E+F + G
Sbjct: 179 RALHNQITLPGGTGPVQVRYADGER--ERIGTLEFK-LFVGSLNKQATEKEVEEIFLQFG 235
Query: 309 EVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETE-KYEIDG--QVLEVVLAKPQAEK 365
V V + + R GF+ ++ + +A+ A+ Y + G Q L V A+P+ K
Sbjct: 236 HVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 295
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +PR A E+++R E G++LEV L+KD+ TG +G FV + T ++A +AI
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 170 IHNK-EFKGKT----------LRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
+HN+ G T R + + +LF+G++ K TE E + G VE
Sbjct: 106 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 164
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACA 245
+ L++D ++RG FV Y + A
Sbjct: 165 VYLMRDEYR--QSRGCGFVKYSSKETA 189
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 12/182 (6%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
+LF+G+VP+T TE+E R + G V + LIKD + + +G FV Y + AD +
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHG-NVLEVALIKDKRT-GQQQGCCFVKYATSKDADRAI 103
Query: 250 QKMSSSSFKLYGNTPT-VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHG 308
+ + + G P V +AD + + + + K L+V ++ + T +++E+F + G
Sbjct: 104 RALHNQITLPGGTGPVQVRYADGER--ERIGTLEFK-LFVGSLNKQATEKEVEEIFLQFG 160
Query: 309 EVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETE-KYEIDG--QVLEVVLAKPQAEK 365
V V + + R GF+ ++ + +A+ A+ Y + G Q L V A+P K
Sbjct: 161 HVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEP---K 217
Query: 366 RP 367
RP
Sbjct: 218 RP 219
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +PR A E+++R E G++LEV L+KD+ TG +G FV + T ++A +AI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 170 IHNK-EFKGKT----------LRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
+HN+ G T R + + +LF+G++ K TE E + G VE
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 239
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACA 245
+ L++D ++RG FV Y + A
Sbjct: 240 VYLMRDEYR--QSRGCGFVKYSSKETA 264
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 12/182 (6%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
+LF+G+VP+T TE+E R + G V + LIKD + + +G FV Y + AD +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHG-NVLEVALIKDKRT-GQQQGCCFVKYATSKDADRAI 178
Query: 250 QKMSSSSFKLYGNTPT-VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHG 308
+ + + G P V +AD + + + + K L+V ++ + T +++E+F + G
Sbjct: 179 RALHNQITLPGGTGPVQVRYADGER--ERIGTLEFK-LFVGSLNKQATEKEVEEIFLQFG 235
Query: 309 EVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETE-KYEIDG--QVLEVVLAKPQAEK 365
V V + + R GF+ ++ + +A+ A+ Y + G Q L V A+P K
Sbjct: 236 HVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEP---K 292
Query: 366 RP 367
RP
Sbjct: 293 RP 294
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 122/279 (43%), Gaps = 29/279 (10%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE-- 168
VF+ LP L+++ + G+I+ ++ D G ++GY FV F+ ++ A AI+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 169 --------DIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIE 220
+I+ +F KT R E L++ N+ V+ED R+ G V S+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV-SLA 231
Query: 221 LIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSAS 280
+ KD RG+AFV + N D R + + K V A K +
Sbjct: 232 IAKDENRLC--RGYAFVNFDNPE--DARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLR 287
Query: 281 SQ-------------VKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFG 327
Q V +YVKN+ VT ++L++ F + G +T + + G + FG
Sbjct: 288 EQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFG 347
Query: 328 FIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
F+ F+ A+ AVK G+ L V +A+ + +++
Sbjct: 348 FVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRK 386
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 118/272 (43%), Gaps = 22/272 (8%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P + +++G L E L + + VRL KD +G + Y + F ++++A
Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80
Query: 166 AIEDIHNKEFKGKTLRCSLS--------ETKHRLFIGNVPKTVT----EDEFRKAVDGVG 213
AIE +N GK +R S +F+ N+P++VT +D F+K + V
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140
Query: 214 PGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKN 273
V ++E K+RG+ FV + A + Q ++S+ + + K
Sbjct: 141 CKVATLE-------DGKSRGYGFVQFEQEDAAHAAIQTLNST---IVADKEIYVGKFMKK 190
Query: 274 SPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAE 333
+ + LY+KN+ +V+ D L+E F G++ + + + R + F++F
Sbjct: 191 TDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDN 250
Query: 334 RSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
A +A + + + L V A+ +AE+
Sbjct: 251 PEDARRAAETVNGTKFGSKCLYVGRAQKKAER 282
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 52/302 (17%)
Query: 105 PPHGS-----------EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYA 153
PP GS ++IG L E+ L G+++ V++++++ TG +GY
Sbjct: 9 PPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYG 68
Query: 154 FVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETK------------HRLFIGNVPKTVT 201
F+ F + A++ ++ + + G L L+ H +F+G++ VT
Sbjct: 69 FIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVT 128
Query: 202 EDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYY-----NNACADYSRQKMSSSS 256
+ ++ V +++ DP +++G+ FV + N A A+ + S+
Sbjct: 129 DYLLQETFRVHYSSVRGAKVVTDPST-GRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 257 FKLYGNTP------------TVTWADPKNSPDHS------ASSQVKALYVKNIPENVTTD 298
++ TP VT +P + + + V N+ +NVT +
Sbjct: 188 MRISAATPKKNVGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEE 247
Query: 299 QLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVL 358
+LK+ F + GEV V KI + +G++ F R SA +AV+ + I Q + +
Sbjct: 248 ELKKAFSQLGEVIYV-----KIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISW 302
Query: 359 AK 360
+K
Sbjct: 303 SK 304
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VF+G +P DA E+ LRE+C +G ++ RL+ DR+TG KGY F +K +E A A ++
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 171 HNKEFKGKTLRCSLSE-------TKHRLFIG-NVPKTVTEDEFRKAVDG 211
+ E G+ LR +E T+ + G +P T T E +K + G
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGG 119
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 278 SASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGK-RDFGFIHFAERSS 336
S+SSQ + ++V NIP + T +QL+E+ G V + + GK + +GF + + +
Sbjct: 3 SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Query: 337 ALKAVKETEKYEIDGQVLEVVLAK 360
AL A + + YEI+G+ L V A+
Sbjct: 63 ALSARRNLQSYEINGRQLRVDFAE 86
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 131/306 (42%), Gaps = 56/306 (18%)
Query: 105 PPHGS-----------EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYA 153
PP GS ++IG L E+ L G+++ V++++++ TG +GY
Sbjct: 9 PPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYG 68
Query: 154 FVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETK------------HRLFIGNVPKTVT 201
F+ F + A++ ++ + + G L L+ H +F+G++ VT
Sbjct: 69 FIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVT 128
Query: 202 EDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYY-----NNACADYSRQKMSSSS 256
+ ++ V +++ DP +++G+ FV + N A A+ + S+
Sbjct: 129 DYLLQETFRVHYSSVRGAKVVTDPST-GRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 257 FKLYGNTPT---------VTWADPKNSPDHSASSQVKA-------------LYVKNIPEN 294
++ TP VT A + + ++ V+A + V N+ +N
Sbjct: 188 MRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQN 247
Query: 295 VTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVL 354
VT ++LK+ F + GEV V KI + +G++ F R SA +AV+ + I Q +
Sbjct: 248 VTEEELKKAFSQLGEVIYV-----KIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAV 302
Query: 355 EVVLAK 360
+ +K
Sbjct: 303 RISWSK 308
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/308 (20%), Positives = 134/308 (43%), Gaps = 49/308 (15%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++IG L + E+ + + G+ ++++++ TG ++GY F+ F + A++ ++
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 170 IHNKEFKG--KTLRCSLSETK------------HRLFIGNVPKTVTEDEFRKAVDGVGPG 215
+ +T R + ++ H +F+G++ VT+ V
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGS 180
Query: 216 VESIELIKDPQNPSKNRGFAFVLYYN-----NACADYSRQKMSSSSFK------------ 258
V+ +++ D + +++G+ FV + + A + + Q S+ +
Sbjct: 181 VKGAKVVLD-RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPM 239
Query: 259 ---LYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVM 315
+Y NT D N P+++ ++V + NVT D+LK +F + GE+ V +
Sbjct: 240 QPAMYQNTQGANAGD--NDPNNTT------IFVGGLDANVTDDELKSIFGQFGELLHVKI 291
Query: 316 PPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPG 375
PPGK GF+ +A ++SA A+ ++ GQ + + + K+ D +N G
Sbjct: 292 PPGK-----RCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGR-SPNKQSDQAQWNGG 345
Query: 376 VHPNHLPH 383
+ + P
Sbjct: 346 GYYGYPPQ 353
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 12/171 (7%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+GGL R+ + + G+I + +MKDR TG +G+ FV + K I+D
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 170 IH-----NKEFKGKTLRCSLSET---KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
H E K R S+S ++F+G +P +V +DEF++ G ++ ++
Sbjct: 103 NHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGE-LKEHQI 161
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPK 272
++D + ++RGF FV Y + D+ K + +L G + A+PK
Sbjct: 162 MRD-HSTGRSRGFGFVTYESEDMVDHLLAK--GNRIELSGTQVEIKKAEPK 209
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 11/206 (5%)
Query: 165 KAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKD 224
K EDI + + K + ++ ++F+G + + T EF K G +S+ ++KD
Sbjct: 18 KPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSV-IMKD 76
Query: 225 PQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVK 284
+ + RGF FV Y +++ D K+ + + G + P+ S S + K
Sbjct: 77 -RKTGQPRGFGFVTYADSSVVD----KVIQDNHIIIGKQVEIKRTIPRGSMS-SNDFKTK 130
Query: 285 ALYVKNIPENVTTDQLKELFRRHGEVTK-VVMPPGKIGGKRDFGFIHFAERSSALKAVKE 343
++V IP +V D+ KE F + GE+ + +M G R FGF+ + + +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 344 TEKYEIDGQVLEVVLAKPQAEKRPDA 369
+ E+ G +E+ A+P K+P++
Sbjct: 191 GNRIELSGTQVEIKKAEP---KKPNS 213
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGGL +D + G+I + +M+DR TG +G+ F+ F K IED
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 170 IH---NKEF-------KGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESI 219
H K+ KG S ++F+G +P TVTEDE + G VE
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH- 138
Query: 220 ELIKDPQNPSKNRGFAFVLYYNNACAD 246
++I+D + +++RGF FV++ + D
Sbjct: 139 QVIRDHET-NRSRGFGFVIFDSEEVVD 164
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 88/189 (46%), Gaps = 10/189 (5%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
++FIG + K T F K G +S+ +++D ++ + RGF F+ + + + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSV-IMRD-RHTGQPRGFGFITFADPSVVD--- 74
Query: 250 QKMSSSSFKLYGNTPTVTWADPKNSP-DHSASSQVKALYVKNIPENVTTDQLKELFRRHG 308
K+ + + G + PK + + S + K ++V IP VT D+LK+ F ++G
Sbjct: 75 -KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Query: 309 EVTK-VVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAE--K 365
V + V+ + R FGF+ F + + + ++ +E+ A+P+ +
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNR 193
Query: 366 RPDAYAFNP 374
P +Y +P
Sbjct: 194 SPPSYGSHP 202
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 26/154 (16%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ LRE G++L+V +M+++ TG +G+ FVAF + ++D
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 170 IHNKEFKGKTLRCSLSETKH------------------------RLFIGNVPKTVTEDEF 205
H+ + + ++ ++S + ++F+G +P +T DEF
Sbjct: 67 KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEF 126
Query: 206 RKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
R + GP +++ +I Q + RGF FV +
Sbjct: 127 RAYFETYGPVSDAVIMID--QTTQRPRGFGFVSF 158
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 97/201 (48%), Gaps = 26/201 (12%)
Query: 90 IDEDEKQKHDELLALPPHG--SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTG 147
++E+EK + PP ++++ G LP + L ++ + + V ++ +RDTG
Sbjct: 64 LEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTG 123
Query: 148 DNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLS------------ETKHRLFIGN 195
++G+AFV E+ I+++ E+ G+ L+ + + ET+H+LF+GN
Sbjct: 124 QSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGN 183
Query: 196 VPKTVTEDE----FRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQK 251
+ TVT + FR+ D VG V + D + ++RG+ FV Y + A + + +
Sbjct: 184 LSWTVTSESLAGAFRECGDVVGARV-----VFD-GDTGRSRGYGFVCYSSKAEMETALES 237
Query: 252 MSSSSFKLYGNTPTVTWADPK 272
+ F+L G V A K
Sbjct: 238 L--DGFELEGRAIRVNLAQGK 256
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 12/176 (6%)
Query: 190 RLFIGNVPKTVTEDEFRKAV-DGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYS 248
+L+ GN+P V + + D P E +E++ + ++ ++RGFAFV N +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANP--ELVEVLYN-RDTGQSRGFAFVTMSNVEDCNII 142
Query: 249 RQKMSSSSFKLYGNTPTVTWAD---PKNSPDHSASSQVKALYVKNIPENVTTDQLKELFR 305
+ + + G V +AD P P + + L+V N+ VT++ L FR
Sbjct: 143 IDNLDGTEY--LGRALKVNFADKPKPNKEPLYPETEH--KLFVGNLSWTVTSESLAGAFR 198
Query: 306 RHGEVTKV-VMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAK 360
G+V V+ G G R +GF+ ++ ++ A++ + +E++G+ + V LA+
Sbjct: 199 ECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGGL +D + G+I + +M+DR TG +G+ F+ F K IED
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 170 IHNKEFKGKTLRCSL------SETK----HRLFIGNVPKTVTEDEFRKAVDGVGPGVESI 219
H K ++ ++ +++K ++F+G +P TVTEDE + G VE
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH- 138
Query: 220 ELIKDPQNPSKNRGFAFVLYYNNACAD 246
++I+D + +++RGF FV++ + D
Sbjct: 139 QVIRDHE-TNRSRGFGFVIFDSEEVVD 164
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +P+ E L L + + EV ++KD+ T ++G F+ ++EEA K +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 170 IHNKE--------FKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
HNK+ + K L +H+LF+G +PK V+E E + G ++ +++
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGT-IKDLQI 137
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTP--TVTWAD 270
++ Q SK G AF+ Y A + + ++ K+ G+T V WAD
Sbjct: 138 LRGAQQTSK--GCAFLKYETKEQAVSAMESINGKH-KMEGSTVPLVVKWAD 185
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P G+ +FI +PR+ + +L + G +L ++ D+ TG +K + FV++ ++ AQ
Sbjct: 346 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQN 405
Query: 166 AIEDIHNKEFKGKTLRCSL 184
AI+ ++ + GK L+ L
Sbjct: 406 AIDMMNGRHLGGKKLKVQL 424
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 124/281 (44%), Gaps = 31/281 (11%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
++IG L E+ L G+++ ++++++ TG +GY F+ F + A++ ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 171 HNK---EFKGKTLR---CSLSETKHR-------LFIGNVPKTVTEDEFRKAVDGVGPGVE 217
+N F + R SLS R +F+G++ VT+ + P V+
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 218 SIELIKDPQNPSKNRGFAFVLYYN-----NACADYSRQKMSSSSFKLYGNTPTVTWADPK 272
+++ D + + +G+ FV + + A + + S+ ++ +
Sbjct: 184 GAKVVID-RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 273 NSPDHSASSQVK-------ALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
+S SA+ ++V + +VT D LK +F ++GE+ V +P GK
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK-----R 297
Query: 326 FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
GF+ F+E+S A +A++ ++ G + + + + K+
Sbjct: 298 CGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +P+ E L L + + EV ++KD+ T ++G F+ ++EEA K +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 170 IHNKE--------FKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
HNK+ + K L +H+LF+G +PK V+E E + G ++ +++
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG-TIKDLQI 137
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTP--TVTWAD 270
++ Q SK G AF+ Y A + + ++ K+ G+T V WAD
Sbjct: 138 LRGAQQTSK--GCAFLKYETKEQAVSAMESINGKH-KMEGSTVPLVVKWAD 185
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 24/152 (15%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ L+E G+++E ++KDR TG +G+ FV F A+ I +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 170 IHN-------------KEFKGKTLRCSLSETK---------HRLFIGNVPKTVTEDEFRK 207
HN ++ + R + S + ++F+G +P +VTE +F+
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 208 AVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
+ G + + + N + RGF F+ Y
Sbjct: 127 YFEQFGTTTDVVVMYD--HNTQRPRGFGFITY 156
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 24/152 (15%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ L+E G+++E ++KDR TG +G+ FV F A+ I +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 170 IHN-------------KEFKGKTLRCSLSETK---------HRLFIGNVPKTVTEDEFRK 207
HN ++ + R + S + ++F+G +P +VTE +F+
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 208 AVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
+ G + + + N + RGF F+ Y
Sbjct: 127 YFEQFGTTTDVVVMYD--HNTQRPRGFGFITY 156
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ V++GGL E+ L EL G ++ V + KDR T ++ Y F+ ++++E+A AI+
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 169 DIHNKEFKGKTLRCSLSETKHR-------LFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
++ + GK +R + + + LFIGN+ V E G + ++
Sbjct: 85 VLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKI 144
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNS 274
++DP + +RGF F+ Y + +D + + M+ L TV++A K++
Sbjct: 145 MRDP-DTGNSRGFGFISYDSFEASDAAIESMTGQ--YLSNRQITVSYAYKKDT 194
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 33/159 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ L+E GD++E +M+DR TG +G+ F+ F A++ I D
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 72
Query: 170 IHNKEFKGKTLRCS-------------------LSETKH----------RLFIGNVPKTV 200
H G+T+ L H ++F+G +P ++
Sbjct: 73 KH--IIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSI 130
Query: 201 TEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
TE EF+ D G + + ++ D N + RGF F+ +
Sbjct: 131 TEAEFKNYFDQFGT-IADVVVMYD-HNTQRPRGFGFITF 167
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 30/156 (19%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ LR+ GD++E +M+DR TG +G+ F+ F +++ I D
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 170 IHNKEFKGKTLRCS-------------------LSETKH-------RLFIGNVPKTVTED 203
H G+T+ L H ++F+G +P ++TE+
Sbjct: 67 KH--IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 204 EFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
EF+ D G + + ++ D N + RGF F+ +
Sbjct: 125 EFKNYFDQFGT-IADVVVMYD-HNTQRPRGFGFITF 158
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 30/156 (19%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ LR+ GD++E +M+DR TG +G+ F+ F +++ I D
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 170 IHNKEFKGKTLRCS-------------------LSETKH-------RLFIGNVPKTVTED 203
H G+T+ L H ++F+G +P ++TE+
Sbjct: 67 KH--IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 204 EFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
EF+ D G + + ++ D N + RGF F+ +
Sbjct: 125 EFKNYFDQFGT-IADVVVMYD-HNTQRPRGFGFITF 158
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 33/159 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ L+E GD++E +M+DR TG +G+ F+ F A++ I D
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 170 IHNKEFKGKTLRCS-------------------LSETKH----------RLFIGNVPKTV 200
H G+T+ L H ++F+G +P ++
Sbjct: 76 KH--IIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSI 133
Query: 201 TEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
TE EF+ D G + + ++ D N + RGF F+ +
Sbjct: 134 TEAEFKNYFDQFGT-IADVVVMYD-HNTQRPRGFGFITF 170
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 123/271 (45%), Gaps = 44/271 (16%)
Query: 134 DILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTL----------RCS 183
+I+ V+++++++ G ++GY FV F++ + A K + +EF G T+ S
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL-----REFNGTTMPNTDQPFRLNWAS 182
Query: 184 LSETKHRL---------FIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGF 234
S + RL F+G++ V+++ + P V++ +++ D N +++G+
Sbjct: 183 FSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLD-ANTGRSKGY 241
Query: 235 AFVLY-----YNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNS---PDHSASS----- 281
FV + A + + K SS + ++ TP T + P+ + +
Sbjct: 242 GFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDI 301
Query: 282 QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAV 341
++V + +VT + LK+ F GE+ V +P GK GF+ F R +A +A+
Sbjct: 302 MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK-----GCGFVQFVNRPNAEEAL 356
Query: 342 KETEKYEIDGQVLEVVLAKPQAEKRP-DAYA 371
++ I Q + + + A K+P D Y
Sbjct: 357 EKLNGTVIGKQTVRLSWGRNPANKQPRDKYG 387
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 30/156 (19%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ LR+ GD++E +M+DR TG +G+ F+ F +++ I D
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 170 IHNKEFKGKTLRCS-------------------LSETKH-------RLFIGNVPKTVTED 203
H G+T+ L H ++F+G +P ++TE+
Sbjct: 67 KH--IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 204 EFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
EF+ D G + + ++ D N + RGF F+ +
Sbjct: 125 EFKNYFDQFGT-IADVVVMYD-HNTQRPRGFGFITF 158
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 30/156 (19%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ LR+ GD++E +M+DR TG +G+ F+ F +++ I D
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 170 IHNKEFKGKTLRCS-------------------LSETKH-------RLFIGNVPKTVTED 203
H G+T+ L H ++F+G +P ++TE+
Sbjct: 67 KH--IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 204 EFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
EF+ D G + + ++ D N + RGF F+ +
Sbjct: 125 EFKNYFDQFGT-IADVVVMYD-HNTQRPRGFGFITF 158
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 125/280 (44%), Gaps = 30/280 (10%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
++IG L E+ L + G+ ++++++ G ++GY F+ F A++ ++
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 171 HN-------KEFKGKTLRCSLSETK------HRLFIGNVPKTVTEDEFRKAVDGVGPGVE 217
+ + F+ + E + H +F+G++ VT+ + V V+
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 218 SIELIKDPQNPSKNRGFAFVLYYN-----NACADYSRQKMSSSSFKL--YGNTPTVTW-- 268
+++ D + +++G+ FV + + A + + Q SS + N +T
Sbjct: 202 GAKVVND-RTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 269 ADPKNSPDHSASS--QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDF 326
A +N+ +S S ++V + ++VT D LK +F + GE+ V +P GK
Sbjct: 261 ASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK-----RC 315
Query: 327 GFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
GF+ +A R+ A +A+ ++ GQ + + + + K+
Sbjct: 316 GFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ 355
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 105 PPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQ 164
PP +++F+G LP D L L E G + ++ +RDT ++G+ FV T EEA+
Sbjct: 109 PPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAE 168
Query: 165 KAIEDIHNKEFKGKTLRCS--------------LSETKHRLFIGNVPKTVTEDEFRKAVD 210
KA+E ++ E G+ L + + + R+++GN+P V +
Sbjct: 169 KAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFS 228
Query: 211 GVGPGVESIELIKDPQNPSKNRGFAFVLYYN 241
G V++ ++ D + ++RGF FV N
Sbjct: 229 EHGKVVDA-RVVSDRET-GRSRGFGFVQMSN 257
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 8/180 (4%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
+LF+GN+P V + G VE E+I + ++ ++RGF FV A+ +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGT-VEISEVIYN-RDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 250 QKMSSSSFKLYGNTPTVTWADPKNS-PDHSASSQVKA--LYVKNIPENVTTDQLKELFRR 306
+K +S F++ G TV A P+ S P+ A +YV N+P +V + +L+ LF
Sbjct: 172 EKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 307 HGEVTKV-VMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
HG+V V+ + G R FGF+ + + A+ + ++G+ ++V +A+ + +
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G LP D L L G +++ R++ DR+TG ++G+ FV + E AI +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 171 HNKEFKGKTLRCSLSETKHR 190
+ +G+ ++ +++E + R
Sbjct: 269 DGQNLEGRAIKVNVAEERTR 288
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 25/195 (12%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ + ED LR+ G++LE +MKDR TG +G+ FV F A++ +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 170 IHNKEFKGKTLRCSLSETKH--------------------RLFIGNVPKTVTEDEFRKAV 209
H + K + ++ H ++F+G + +VTE EF+K
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
Query: 210 DGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWA 269
G + + ++ D + RGF F+ Y + D QK + +L G V A
Sbjct: 127 AQFGM-ITDVVVMYD-HRTQRPRGFGFISYDSEEAVDKVLQK---TFHELNGKMVEVKLA 181
Query: 270 DPKNSPDHSASSQVK 284
PK+ ++ +Q+
Sbjct: 182 VPKDMALNTMRNQMN 196
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 25/195 (12%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ + ED LR+ G++LE +MKDR TG +G+ FV F A++ +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 170 IHNKEFKGKTLRCSLSETKH--------------------RLFIGNVPKTVTEDEFRKAV 209
H + K + ++ H ++F+G + +VTE EF+K
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
Query: 210 DGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWA 269
G + + ++ D + RGF F+ Y + D QK + +L G V A
Sbjct: 127 AQFGM-ITDVVVMYD-HRTQRPRGFGFISYDSEEAVDKVLQK---TFHELNGKMVEVKLA 181
Query: 270 DPKNSPDHSASSQVK 284
PK+ ++ +Q+
Sbjct: 182 VPKDMALNTMRNQMN 196
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 108/260 (41%), Gaps = 35/260 (13%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+ GLP E++L E GDI EV L+ D+DT +G AFV + E A+ A++ +
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 288
Query: 171 HNKEFKGKTLRC-----SLSETKHRLFIGNVPKTVTE--DEFRKAVDGVGPGVESIELIK 223
F+G+TL K N+PK+ + +E RKA + G
Sbjct: 289 DKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPKSFKKEREEQRKASEACGNTNAWNSFFM 348
Query: 224 DP----QNPSKNRGFAFVLYYNNACAD--------------YSRQKMSSSSFKLYG-NTP 264
P +N ++ G + C D +++ ++ + ++
Sbjct: 349 RPDTILENLVRSYGVTKSELLDRECEDPAVRLALGETRVIMETKEALAKAGVRVTSLEEF 408
Query: 265 TVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR 324
D KN H L VK++P T +L ++FR+ G + K+V+PP K
Sbjct: 409 AARKGDVKNRSKH-------ILLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKTMAL- 460
Query: 325 DFGFIHFAERSSALKAVKET 344
F+ AE +A+ + T
Sbjct: 461 -VVFLEAAEARAAMNGLAYT 479
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + D++R E G+ILE ++ D++TG +KGY FV F+ + A +A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 169 DIHNKEFKGKTLRCSLSE 186
D N G+ C+++
Sbjct: 77 DP-NPVIDGRKANCNIAS 93
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 26/154 (16%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+GG+ + ED LRE G++ + +M+D+ TG +G+ FV F + +++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 170 IHN----------------KEFKGKTLRCSLSETK--------HRLFIGNVPKTVTEDEF 205
H+ ++ G+T + S + ++F+G +P T+T++EF
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126
Query: 206 RKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
R+ + GP V + ++ D Q ++ RGF FV +
Sbjct: 127 RQYFEVYGP-VTDVAIMYD-QATNRPRGFGFVSF 158
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + D++R E G+ILE ++ D++TG +KGY FV F+ + A +A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 169 DIHNKEFKGKTLRCSLSE 186
D N G+ C+++
Sbjct: 77 DP-NPVIDGRKANCNIAS 93
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +P+ E L L + EV ++K++ T +G F+ T+E+A K I
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 170 IHNKE--------FKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
HNK+ + K L +H+LF+G +PK V+E E + G ++ +++
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYGT-IKDLQI 131
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTP-TVTWAD 270
++ SK G F+ Y + A + + ++ N P V WAD
Sbjct: 132 LRGSLQTSK--GCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 179
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P G+ +FI +PR+ + +L +P G +L ++ D+ TG +K + F+++ ++ AQ
Sbjct: 327 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 386
Query: 166 AIEDIHNKEFKGKTLRCSL 184
AI ++ + GK L+ L
Sbjct: 387 AINTMNGCQLSGKKLKVQL 405
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GGL + D +R E G+I+E ++ D++TG +KGY FV FK E A +A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 169 DIHNKEFKGKTLRCSLS 185
++ N G+ C+L+
Sbjct: 82 NM-NPVIDGRRANCNLA 97
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S++FIGG+ ED LRE G++++ R++ DR+TG ++G+ FV F + E A AI+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 169 DIHNKEFKGKTLRC 182
+ ++ G+ ++
Sbjct: 100 ALDGRDLHGRVVKV 113
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 121/272 (44%), Gaps = 33/272 (12%)
Query: 134 DILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIH-----NKEFKGKTLRCSLSETK 188
+I+ +++++++ G ++GY FV F++ + A K +++ + N + + S S +
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGE 189
Query: 189 HRL---------FIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
RL F+G++ V++ + P V++ +++ D N +++G+ FV +
Sbjct: 190 KRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDA-NTGRSKGYGFVRF 248
Query: 240 -----YNNACADYSRQKMSSSSFKLYGNTPTVTWAD-------PKNSPDHSASSQVKA-L 286
A + + K SS + ++ TP T P + S + +
Sbjct: 249 GDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTI 308
Query: 287 YVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEK 346
+V + +VT + LK+ F GE+ V +P GK GF+ F R +A +A+++
Sbjct: 309 FVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK-----GCGFVQFVNRPNAEEALEKLNG 363
Query: 347 YEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHP 378
I Q + + + A K+P N V P
Sbjct: 364 TVIGKQTVRLSWGRNPANKQPRDKYGNQWVDP 395
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 80 VEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVR 139
V E EKP +D + V+IG +PR + L +L E G + +V+
Sbjct: 58 VTETEEKPAALDPSSEAAR-----------RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQ 106
Query: 140 LMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSE------------- 186
+M D+ +G ++ + F K+ E+A +E ++ +G+ ++ +++E
Sbjct: 107 VMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQ 166
Query: 187 --------TKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVL 238
+ +++++GN+ KTVT++ G V S ++ + P SK+ GF FV
Sbjct: 167 SEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGK-VVSAKVSRVP-GTSKSTGFGFVT 224
Query: 239 Y 239
+
Sbjct: 225 F 225
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 185 SETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNAC 244
SE R++IGN+P+TVT ++ K V+ G VE ++++ D + ++R F F +
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHG-AVEKVQVMYD-KYSGRSRRFGFATMKSVED 129
Query: 245 ADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSA-----SSQVKA---LYVKNIPENVT 296
A+ +K++ ++ + +T +SPD S S+ V + +YV N+ + VT
Sbjct: 130 ANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVT 189
Query: 297 TDQLKELFRRHGEVT--KVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVL 354
+ L+ LF G+V KV PG FGF+ F+ A+ ++GQ +
Sbjct: 190 KEMLENLFSEKGKVVSAKVSRVPGT-SKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248
Query: 355 EV 356
V
Sbjct: 249 RV 250
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 80 VEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVR 139
V E EKP +D + V+IG +PR + L +L E G + +V+
Sbjct: 58 VTETEEKPAALDPSSEAAR-----------RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQ 106
Query: 140 LMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSE------------- 186
+M D+ +G ++ + F K+ E+A +E ++ +G+ ++ +++E
Sbjct: 107 VMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQ 166
Query: 187 --------TKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVL 238
+ +++++GN+ KTVT++ G V S ++ + P SK+ GF FV
Sbjct: 167 SEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGK-VVSAKVSRVP-GTSKSTGFGFVT 224
Query: 239 Y 239
+
Sbjct: 225 F 225
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 185 SETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNAC 244
SE R++IGN+P+TVT ++ K V+ G VE ++++ D + ++R F F +
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHG-AVEKVQVMYD-KYSGRSRRFGFATMKSVED 129
Query: 245 ADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSA-----SSQVKA---LYVKNIPENVT 296
A+ +K++ ++ + +T +SPD S S+ V + +YV N+ + VT
Sbjct: 130 ANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVT 189
Query: 297 TDQLKELFRRHGEVT--KVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVL 354
+ L+ LF G+V KV PG FGF+ F+ A+ ++GQ +
Sbjct: 190 KEMLENLFSEKGKVVSAKVSRVPGT-SKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248
Query: 355 EV 356
V
Sbjct: 249 RV 250
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + D++R + G+ILE ++ D+ TG +KGY FV F+ + A +A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 169 DIHNKEFKGKTLRCSLSE 186
D N G+ C+++
Sbjct: 77 D-PNPVIDGRKANCNIAS 93
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 90/219 (41%), Gaps = 51/219 (23%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ + ED LR+ G++LE +MKDR TG +G+ FV F A++ +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 170 IHNKEFKGKTL-------------RC-SLSET---------------------------- 187
H GK L +C SLSE
Sbjct: 67 KH--IIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGP 124
Query: 188 --KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACA 245
++F+G + +VTE EF+K G + + ++ D + RGF F+ Y +
Sbjct: 125 SNSKKIFVGGLASSVTEAEFKKYFAQFGM-ITDVVVMYD-HRTQRPRGFGFISYDSEEAV 182
Query: 246 DYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVK 284
D QK + +L G V A PK+ ++ +Q+
Sbjct: 183 DKVLQK---TFHELNGKMVEVKLAVPKDMALNTMRNQMN 218
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 108 GSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAI 167
GS +F+GGL + + DL GDIL+ ++M +RDTG ++G+ F+ F + ++I
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 168 EDIHNKEFKGKTLRCSLSETK 188
++H ++F + + + +E K
Sbjct: 66 REMHGRDFGDRVISVNRAEPK 86
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + + LR+ E G+ILE ++ D++TG +KGY FV F+ E A++A
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
Query: 169 DIHNKEFKGKTLRCSLSE 186
D G+ C+L+
Sbjct: 84 D-PTPIIDGRRANCNLAS 100
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +P+ E L L + EV ++K++ T +G F+ T+E+A K I
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 170 IHNKEF------------------KGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDG 211
HNK+ + L CS + +H+LF+G +PK V+E E +
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLDVLDCSCNP-EHKLFVGMLPKNVSETEVQSLFSE 131
Query: 212 VGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTP-TVTWAD 270
G ++ +++++ SK G F+ Y + A + + ++ N P V WAD
Sbjct: 132 YG-TIKDLQILRGSLQTSK--GCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 188
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P G+ +FI +PR+ + +L +P G +L ++ D+ TG +K + F+++ ++ AQ
Sbjct: 336 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 395
Query: 166 AIEDIHNKEFKGKTLRCSL 184
AI ++ + GK L+ L
Sbjct: 396 AINTMNGCQLSGKKLKVQL 414
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 41/294 (13%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G L E L ++ V++++++ T ++GY FV F ++ A++A++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 171 H-----NKEFKGKTLRCSLSETKHR---------LFIGNVPKTVTEDEFRKAVDGVGPGV 216
N E + S S + R +F+G++ V++ + G P V
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 217 ESIELIKDPQNPSKNRGFAFVLY-----YNNACADYSRQKMSSSSFKLYGNTP------- 264
+ +++ D N +++G+ FV + + A + + SS ++ TP
Sbjct: 241 KGAKVVID-SNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYG 299
Query: 265 --------TVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMP 316
T+ N S ++V + +VT + L + F GEV V +P
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 317 PGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAK-PQAEKRPDA 369
GK GF+ FA R SA +A+ I + + + P + R D+
Sbjct: 360 VGK-----GCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDS 408
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 49/80 (61%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S++F+GGL + L++ G++ E ++ DR+TG ++G+ FV+F ++ A AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 169 DIHNKEFKGKTLRCSLSETK 188
++ KE G+ +R +L+ +
Sbjct: 95 EMDGKELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 49/80 (61%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S++F+GGL + L++ G++ E ++ DR+TG ++G+ FV+F ++ A AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 169 DIHNKEFKGKTLRCSLSETK 188
++ KE G+ +R +L+ +
Sbjct: 95 EMDGKELNGRQIRVNLATER 114
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + + LR + GDILE ++ D++TG +KGY FV F+ E A++A
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Query: 169 DIHNKEFKGKTLRCSLSE 186
D G+ C+L+
Sbjct: 84 DP-TPIIDGRRANCNLAS 100
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + + LR + GDILE ++ D++TG +KGY FV F+ E A++A
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Query: 169 DIHNKEFKGKTLRCSLSE 186
D G+ C+L+
Sbjct: 84 DP-TPIIDGRRANCNLAS 100
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P S++ + LP ED L+ G+I EV+L+KD +KGYAF+ F ++++A
Sbjct: 37 PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96
Query: 166 AIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKT 199
AIE + + + G+ + +++ R F G +P+T
Sbjct: 97 AIETMDRRMYNGRMIYIDIAKPGKRDFQG-LPRT 129
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 109/249 (43%), Gaps = 31/249 (12%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
++IG L E+ L G+++ ++++++ TG +GY F+ F + A++ ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 171 HNK---EFKGKTLR---CSLSETKHR-------LFIGNVPKTVTEDEFRKAVDGVGPGVE 217
+N F + R SLS R +F+G++ VT+ + P V+
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 218 SIELIKDPQNPSKNRGFAFVLYYN-----NACADYSRQKMSSSSFKLYGNTPTVTWADPK 272
+++ D + + +G+ FV + + A + + S+ ++ +
Sbjct: 184 GAKVVID-RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 273 NSPDHSASSQVK-------ALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
+S SA+ ++V + +VT D LK +F ++GE+ V +P GK
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK-----R 297
Query: 326 FGFIHFAER 334
GF+ F+E+
Sbjct: 298 CGFVQFSEK 306
>AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 120/290 (41%), Gaps = 46/290 (15%)
Query: 89 LIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRE---LCEPMGDILEVRLMKDRD 145
L+ EDE + LP E+ GLP + DDL E C G L+V +D
Sbjct: 93 LLPEDENE------LLPGLIDELNFTGLPDEL--DDLEECDVFCTGGGMELDVE-SQDNH 143
Query: 146 TGDNKGY---------AFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNV 196
D G AFV K A + + N E +TL F+ N+
Sbjct: 144 AVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTL-----------FVRNI 192
Query: 197 PKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSS 256
+V + E + G I+ K+RGF + YY+ A + + + ++
Sbjct: 193 NSSVEDSELSALFEPFGE-------IRSLYTACKSRGFVMISYYDIRAAHAAMRALQNT- 244
Query: 257 FKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMP 316
L T + ++ PK +P +Q L + N+ V+ D+L +LF +GE+ ++
Sbjct: 245 -LLRKRTLDIHFSIPKENPSEKDMNQ-GTLVIFNVDTTVSNDELLQLFGAYGEIREIRET 302
Query: 317 PGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
P +R FI + + A A+K + EI G+ +++ L++P +R
Sbjct: 303 P----NRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARR 348
>AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 120/290 (41%), Gaps = 46/290 (15%)
Query: 89 LIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRE---LCEPMGDILEVRLMKDRD 145
L+ EDE + LP E+ GLP + DDL E C G L+V +D
Sbjct: 93 LLPEDENE------LLPGLIDELNFTGLPDEL--DDLEECDVFCTGGGMELDVE-SQDNH 143
Query: 146 TGDNKGY---------AFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNV 196
D G AFV K A + + N E +TL F+ N+
Sbjct: 144 AVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTL-----------FVRNI 192
Query: 197 PKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSS 256
+V + E + G I+ K+RGF + YY+ A + + + ++
Sbjct: 193 NSSVEDSELSALFEPFGE-------IRSLYTACKSRGFVMISYYDIRAAHAAMRALQNT- 244
Query: 257 FKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMP 316
L T + ++ PK +P +Q L + N+ V+ D+L +LF +GE+ ++
Sbjct: 245 -LLRKRTLDIHFSIPKENPSEKDMNQ-GTLVIFNVDTTVSNDELLQLFGAYGEIREIRET 302
Query: 317 PGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
P +R FI + + A A+K + EI G+ +++ L++P +R
Sbjct: 303 P----NRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARR 348
>AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850077-17854205 FORWARD LENGTH=843
Length = 843
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 120/290 (41%), Gaps = 46/290 (15%)
Query: 89 LIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRE---LCEPMGDILEVRLMKDRD 145
L+ EDE + LP E+ GLP + DDL E C G L+V +D
Sbjct: 106 LLPEDENE------LLPGLIDELNFTGLPDEL--DDLEECDVFCTGGGMELDVE-SQDNH 156
Query: 146 TGDNKGY---------AFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNV 196
D G AFV K A + + N E +TL F+ N+
Sbjct: 157 AVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTL-----------FVRNI 205
Query: 197 PKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSS 256
+V + E + G I+ K+RGF + YY+ A + + + ++
Sbjct: 206 NSSVEDSELSALFEPFGE-------IRSLYTACKSRGFVMISYYDIRAAHAAMRALQNT- 257
Query: 257 FKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMP 316
L T + ++ PK +P +Q L + N+ V+ D+L +LF +GE+ ++
Sbjct: 258 -LLRKRTLDIHFSIPKENPSEKDMNQ-GTLVIFNVDTTVSNDELLQLFGAYGEIREIRET 315
Query: 317 PGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
P +R FI + + A A+K + EI G+ +++ L++P +R
Sbjct: 316 P----NRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARR 361
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++++GGLP + + LR E GDI+ V ++ DR+TG ++GY FV F+ E A +A +
Sbjct: 52 TKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQ 111
Query: 169 DIHNKEFKGKTLRCSLSETKHRL 191
+ G+ +C+L+ R+
Sbjct: 112 N-PKPVIDGREAKCNLAYIGGRV 133
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 76/152 (50%), Gaps = 25/152 (16%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G LP +L ++ G +++V+++ D+ T ++G+ FV + EEA++A++
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 171 HNKEFKGKTLRCSLSE-----------------------TKHRLFIGNVPKTVTEDEFRK 207
++ + G+T++ + E + H+++ GN+ +T +
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 208 AVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
A G PGV ++I + +N ++RGF F+ +
Sbjct: 238 AF-GDQPGVLGAKVIYE-RNTGRSRGFGFISF 267
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
RL++GN+P T+T E + G V+ ++++ D + ++RGF FV + A +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVD-VQIVYD-KVTDRSRGFGFVTMGSIEEAKEAM 174
Query: 250 QKMSSSSFKLYGNTPTVTWAD-PKNSPDHSASSQVK-----------ALYVKNIPENVTT 297
Q +SS ++ G T V + + P+ + ++++ +Y N+ N+T+
Sbjct: 175 QMFNSS--QIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTS 232
Query: 298 DQLKELFRRH-GEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEV 356
LK+ F G + V+ G R FGFI F + A+ E++G+ L +
Sbjct: 233 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL 292
Query: 357 VLAK 360
LA
Sbjct: 293 NLAS 296
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + + LR E GDI+E ++ D+ +G +KGY FV F E AQKA
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Query: 169 DIHNKEFKGKTLRCSLS 185
D G+ C+L+
Sbjct: 67 DP-APVIDGRRANCNLA 82
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 50/77 (64%)
Query: 112 FIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIH 171
F+GGL ++DL+ GD+++ +++ DR++G ++G+ FV FK ++ + AIE+++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 172 NKEFKGKTLRCSLSETK 188
KE G+ + + ++++
Sbjct: 69 GKELDGRVITVNEAQSR 85
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + + LR E GDI+E ++ D+ +G +KGY FV F E AQKA
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Query: 169 DIHNKEFKGKTLRCSLS 185
D G+ C+L+
Sbjct: 67 DP-APVIDGRRANCNLA 82
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 131/304 (43%), Gaps = 56/304 (18%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G L E L G++ V++++++ T ++GY FV F ++ A++ +++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 171 H-----NKEFKGKTLRCSLSETKHR---------LFIGNVPKTVTEDEFRKAVDGVGPGV 216
N + + S S + R +F+G++ VT+ + P V
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 217 ESIELIKDPQNPSKNRGFAFVLY------------YNNA-CAD--------------YSR 249
+S +++ D N +++G+ FV + N A C++ ++
Sbjct: 230 KSAKVVIDS-NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQ 288
Query: 250 QKMSSSSFKL---YGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRR 306
Q+ SS + L +G+ ++ + + +A+ ++V I +V + L++ F +
Sbjct: 289 QQHSSQAVILAGGHGSNGSMGYGSQSDGESTNAT-----IFVGGIDPDVIDEDLRQPFSQ 343
Query: 307 HGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAK-PQAEK 365
GEV V +P GK GF+ FA+R SA A++ I + + + P +
Sbjct: 344 FGEVVSVKIPVGK-----GCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQW 398
Query: 366 RPDA 369
R D+
Sbjct: 399 RGDS 402
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 7/147 (4%)
Query: 229 SKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYV 288
S + F+ +N+ + ++R +S F++ + +AD + S S+ +K L+V
Sbjct: 41 SDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDG----FADVAPPKEQSFSADLK-LFV 95
Query: 289 KNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGK-RDFGFIHFAERSSALKAVKETEKY 347
N+P NV + QL +LF G V V + KI G+ R FGF+ + S A ++ Y
Sbjct: 96 GNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGY 155
Query: 348 EIDGQVLEVVLAKPQAEKRPDAYAFNP 374
E+DG+ L V A P KR D ++ P
Sbjct: 156 ELDGRPLRVN-AGPPPPKREDGFSRGP 181
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
V++G L + L L G ++E R++ DRD+G +KG+ FV + + +E Q AI+ +
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 171 HNKEFKGKTLRCSLSETK 188
+ G+ +R S +E +
Sbjct: 266 DGADLDGRQIRVSEAEAR 283
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 108 GSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAI 167
S++FIGGL E L E G ++E +++ DR + +KG+ FV F + +EAQKA+
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 168 EDIHNKEFKGKTLRCSLSETKHRL 191
+ + ++ G+T+ ++ K L
Sbjct: 93 MEFNGQQLNGRTIFVDYAKAKQSL 116
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G L + L L G ++E R++ DRD+G +KG+ FV + +E QKAI +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 171 HNKEFKGKTLRCSLSETK 188
+ + G+ +R S +E +
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G L + L L G ++E R++ DRD+G +KG+ FV + +E QKAI +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 171 HNKEFKGKTLRCSLSETK 188
+ + G+ +R S +E +
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G L + L L G ++E R++ DRD+G +KG+ FV + +E QKAI +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 171 HNKEFKGKTLRCSLSETK 188
+ + G+ +R S +E +
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 45/69 (65%)
Query: 112 FIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIH 171
F+GGL ++DL+ GD+++ +++ DR++G ++G+ FV FK ++ + AIE+++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 172 NKEFKGKTL 180
KE G+ +
Sbjct: 69 GKELDGRVI 77
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S++F+GG+ E LRE G++++ +++ DR+TG ++G+AFV F + EEA A++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 169 DIHNKEFKGKTLRCSLS 185
+ ++ G+ +R + +
Sbjct: 94 -LDGQDLHGRRIRVNYA 109
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G L + L L G ++E R++ DRD+G +KG+ FV + +E QKAI +
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 171 HNKEFKGKTLRCSLSETK 188
+ + G+ +R S +E +
Sbjct: 340 NGADLDGRQIRVSEAEAR 357
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 45/70 (64%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
F+GGL ++DL+ GD+++ +++ DR++G ++G+ FV FK ++ + AIE++
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 171 HNKEFKGKTL 180
+ KE G+ +
Sbjct: 68 NGKELDGRVI 77
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S +F+GGL D E L + G I E ++M RDTG +G+ F+ F + A AI+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 169 DIHNKEFKGKTLRCSLSETK 188
+H +E K + + +E K
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S +F+GGL D E L + G I E ++M RDTG +G+ F+ F + A AI+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 169 DIHNKEFKGKTLRCSLSETK 188
+H +E K + + +E K
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 22/205 (10%)
Query: 178 KTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFV 237
KT S K +LF+ N+P +++ ++ + G V ++E+I+ Q KNRGFAFV
Sbjct: 84 KTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGT-VNNVEIIR--QKDGKNRGFAFV 140
Query: 238 LYYNNACADYSRQKMSSSSFKLYGNTPTVTWA---------DPKNSPDHSASSQVKALYV 288
+ A + K +F++ G +V++A P + P + LYV
Sbjct: 141 TMASGEEAQAAIDKF--DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYV 198
Query: 289 KNIPENVTTDQLKELFRR---HGEVTKVVM--PPGKIGGKRDFGFIHFAERSSALKAVKE 343
N+ + L+ELF + +VV P G+ G +GF+ FA R A A+ +
Sbjct: 199 SNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSG---YGFVSFATREEAENAITK 255
Query: 344 TEKYEIDGQVLEVVLAKPQAEKRPD 368
EI G+ + + + A + D
Sbjct: 256 LNGKEIMGRPITLKFSLRSASESED 280
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+ LP +D+ EL G + V +++ +D G N+G+AFV + EEAQ AI+
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDK 154
Query: 170 IHNKEFKGKTLRCSLS--------------------ETKHRLFIGNVPKTVTEDEFRKAV 209
+ G+ + S + +T+H+L++ N+ R+
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELF 214
Query: 210 DGVGPG-VESIELIKDPQNPSKNRGF 234
V + + DP+ S GF
Sbjct: 215 TAADFNPVSARVVFADPEGRSSGYGF 240
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL D ++ + + GDILE ++ D+ T +KGY FV FK + A +A E
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
Query: 169 DIHNKEFKGKTLRCSLSETKHRL 191
D G+ C+L+ RL
Sbjct: 77 D-STPIINGRRANCNLASLGGRL 98
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 25/218 (11%)
Query: 167 IEDIHNKEFKGKTLRCSLSET--------KHRLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
+E ++ + KGK +R SE + +F+ N+ +++ + G V S
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGK-VLS 59
Query: 219 IELIKDPQNPSKNRGFAFVLYYNN-----ACADYSRQKMSSSSFKLYGNTPTVTWADPKN 273
++ +D SK G+ FV +Y++ AC ++ + + + W
Sbjct: 60 CKVARDASGVSK--GYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQW----- 112
Query: 274 SPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAE 333
S +YVKN+ E T LK LF GE+T V+ G R FGF++F +
Sbjct: 113 ----DKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEK 168
Query: 334 RSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYA 371
+A+ A+++ +D + L V A+ + + D A
Sbjct: 169 AEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKA 206
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 12/182 (6%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
+LF+GN+ V + G VE E+I + + ++RGF FV + A+ +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGT-VEIAEVIYNRET-DQSRGFGFVTMSSVDEAETAV 208
Query: 250 QKMSSSSFKLYGNTPTVTWADPKNS-PDHSASSQVKA--LYVKNIPENVTTDQLKELFRR 306
+K + + L G TV A P+ S P+ + A +YV N+P +V +L++LF
Sbjct: 209 EKFNR--YDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 307 HGEVTKV-VMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
HG+V + V+ + G R FGF+ ++ +A+ + ++G+ + V + AE+
Sbjct: 267 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNV----AEE 322
Query: 366 RP 367
RP
Sbjct: 323 RP 324
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
V++G LP D L +L G ++E R++ DR+TG ++G+ FV +E +AI +
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 171 HNKEFKGKTLRCSLSETK 188
+ +G+ +R +++E +
Sbjct: 306 DGQNLEGRAIRVNVAEER 323
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 105 PPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQ 164
P +++F+G L D L L E G + ++ +R+T ++G+ FV + +EA+
Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 165 KAIEDIHNKEFKGKTLRCS--------------LSETKHRLFIGNVPKTVTEDEFRKAVD 210
A+E + + G+ L + + E R+++GN+P V +
Sbjct: 206 TAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFS 265
Query: 211 GVGPGVESIELIKDPQNPSKNRGFAFV 237
G VE+ ++ D + ++RGF FV
Sbjct: 266 EHGKVVEA-RVVYDRET-GRSRGFGFV 290
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 108 GSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAI 167
G+ V++GGLP D E+ +R + G +L V+++ DR K Y FV F + A AI
Sbjct: 6 GNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAI 64
Query: 168 EDIHNKEFKGKTLRCSLSETK 188
ED+ K G+ +R + T+
Sbjct: 65 EDMDGKSIGGRAVRVNDVTTR 85
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P E+++ +PR L ++ +P G ++ V + ++ TG+++G +V + A+
Sbjct: 105 PRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKI 164
Query: 166 AIEDIHNKEFKGKTLRCSLS------------------------ETKHRLFIGNVPKTVT 201
AI + E G+ +R S E++H++++GN+P
Sbjct: 165 AIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQ 224
Query: 202 EDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
D R G V S ++ D + +NR FAF+ +
Sbjct: 225 PDGLRNHFSKFGTIV-STRVLHD-RKTGRNRVFAFLSF 260
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 49/80 (61%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++++ GL ED LR+ E G+++ + ++ D+ KG+AF+ ++T+EEA KAI+
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 169 DIHNKEFKGKTLRCSLSETK 188
+H K G+ + ++T+
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+G L ED LRE+ G I +RL++ TG ++GY FV ++T++E +A ED
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 171 HNKEFKGKTL 180
H+ G+ +
Sbjct: 126 HHSLIDGREI 135
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+GG+ + + G++++ +M DR TG+ +G+ FV F A+K +E+
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 170 IHNKEFKGKTLRCSL------------SETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVE 217
H + + L+ +L S+T+ ++F+G +P + EDE + G +E
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTR-KIFVGGLPPLLEEDELKNYFCVYGDIIE 185
Query: 218 SIELIKDPQNPSKNRGFAFVLYYNNACAD 246
+++ D + ++RGF FV + D
Sbjct: 186 H-QIMYD-HHTGRSRGFGFVTFQTEDSVD 212
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 11/185 (5%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELI-KDPQNPSKNRGFAFVLYYNNACADYS 248
+LF+G V T + F G V+S+ + + NP RGF FV + ++A A
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNP---RGFGFVTFADSAVA--- 120
Query: 249 RQKMSSSSFKLYGNTPTVTWADPKNSPDHS--ASSQVKALYVKNIPENVTTDQLKELFRR 306
+K+ + + P+ D A S+ + ++V +P + D+LK F
Sbjct: 121 -EKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCV 179
Query: 307 HGEVTK-VVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
+G++ + +M G R FGF+ F S + + + +E+ + +E+ A+P+
Sbjct: 180 YGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTG 239
Query: 366 RPDAY 370
R +++
Sbjct: 240 RDNSF 244
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+GGLP ED+L+ GDI+E ++M D TG ++G+ FV F+T++ + D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 170 IHNKEFKGKTLRCSLSETK 188
E K + +E K
Sbjct: 218 GKVHELGDKQVEIKRAEPK 236
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++FIGGL + LR+ GD+++ +++ DR+TG ++G+ FV F + A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 169 DIHNKEFKGKTLR 181
++ KE G+ +R
Sbjct: 95 EMDGKELNGRHIR 107
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++FIGGL + LR+ GD+++ +++ DR+TG ++G+ FV F + A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 169 DIHNKEFKGKTLR 181
++ KE G+ +R
Sbjct: 95 EMDGKELNGRHIR 107
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++FIGGL + LR+ GD+++ +++ DR+TG ++G+ FV F + A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 169 DIHNKEFKGKTLR 181
++ KE G+ +R
Sbjct: 95 EMDGKELNGRHIR 107
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++FIGGL + LR+ GD+++ +++ DR+TG ++G+ FV F + A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 169 DIHNKEFKGKTLR 181
++ KE G+ +R
Sbjct: 95 EMDGKELNGRHIR 107
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + ++ +++ E G+ILE ++ D+ +G +KGY FV F+ E A+ A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
Query: 169 DIHNKEFKGKTLRCSLSE 186
D G+ C+L+
Sbjct: 73 DA-TPVIDGRRANCNLAS 89
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++++GGLP ++ L + G+I+ V ++ DR+T ++GY FV FK E A +A +
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 169 DIHNKEFKGKTLRCSLS 185
D N +G+ C L+
Sbjct: 73 DP-NPTIEGRITNCKLA 88
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + ++ +++ E G+ILE ++ D+ +G +KGY FV F+ E A+ A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
Query: 169 DIHNKEFKGKTLRCSLSE 186
D G+ C+L+
Sbjct: 73 DA-TPVIDGRRANCNLAS 89
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GGLP E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 437 NGIKMGDKTL 446
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + ++ +++ E G+ILE ++ D+ +G +KGY FV F+ E A+ A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
Query: 169 DIHNKEFKGKTLRCSLSE 186
D G+ C+L+
Sbjct: 73 DA-TPVIDGRRANCNLAS 89
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ ++IG LP +D L L G+I+ +++KDR TG +KGY FV + + A A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 169 DIHNKEFKGKTLRCSLS 185
++ F+G+TL ++
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ ++IG LP +D L L G+I+ +++KDR TG +KGY FV + + A A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 169 DIHNKEFKGKTLRCSLS 185
++ F+G+TL ++
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ ++IG LP +D L L G+I+ +++KDR TG +KGY FV + + A A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 169 DIHNKEFKGKTLRCSLS 185
++ F+G+TL ++
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+ GL D ++L+ E G+I E ++ D+DTG KG+ FV FKT++ A+ A+++
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 171 HNKEFKGKTLRC 182
+ + +T+ C
Sbjct: 225 EKRMYN-RTVSC 235
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 105 PPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQ 164
P ++FI GL E LR E G+++EV+++ D+ + +KGYAF+ + T+E A
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337
Query: 165 KAIEDIHNKEFKGKTLRCSLSETK 188
A+++++ K G + +++TK
Sbjct: 338 TALKEMNGKIINGWMIVVDVAKTK 361
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GGLP E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 421 NGIKMGDKTL 430
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GGLP E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 339 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 398
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 399 NGIKMGDKTL 408
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GGLP E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 421 NGIKMGDKTL 430
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GGLP E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 421 NGIKMGDKTL 430
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 123 DDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTL 180
DDL L G +++V + +DR TGD++G+AFV +K K+EA KA+E + + G+ +
Sbjct: 30 DDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREI 87
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 123 DDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTL 180
DDL L G +++V + +DR TGD++G+AFV +K K+EA KA+E + + G+ +
Sbjct: 30 DDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREI 87
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+ G D +++L+ E G+I E ++ D+DTG KGY FV FKT++ A++A++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 171 HNKEFKGKTLRCSLSETK 188
+ + + + C+L+ K
Sbjct: 470 EKRMY-NRIVVCNLASEK 486
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+ GL R + L++ G +++ R++ DRD+G +KG+ FV + T E+A+KA ++
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 171 HNKEFKG 177
+ K G
Sbjct: 96 NAKFLDG 102
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 47/71 (66%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
V++GG+P D E DL + G+I++V L++D+ TG +KG+AF+A++ + A++++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 171 HNKEFKGKTLR 181
+ G+T++
Sbjct: 98 NGALVLGRTIK 108
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 108 GSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAI 167
+ V++G L +D LRE G++++ +M+DR T ++G+ FV + + EA+ A+
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 168 EDIHNKEFKGKTLRCSL 184
+ KE G+ + L
Sbjct: 62 SGMDGKELNGRRVSVKL 78
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 90 IDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDN 149
+ D ++++DE + V + L D E DL EL P G + V + D+ TG +
Sbjct: 202 VGSDMRRRNDE--------NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVS 253
Query: 150 KGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLS 185
+G+ FV F ++E+AQ+AI ++ + LR +
Sbjct: 254 RGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 40/60 (66%)
Query: 112 FIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIH 171
F+GGL ++DL+ GD+++ +++ DR++G ++G+ FV FK ++ + AIE+++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 90 IDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDN 149
+ D ++++DE + V + L D E DL EL P G + V + D+ TG +
Sbjct: 229 VGSDMRRRNDE--------NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVS 280
Query: 150 KGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLR 181
+G+ FV F ++E+AQ+AI ++ + LR
Sbjct: 281 RGFGFVNFVSREDAQRAINKLNGYGYDNLILR 312
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 48/86 (55%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+ L + LR+L P G I E RL++D +T KG+ F+ F ++++A+KA++
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 169 DIHNKEFKGKTLRCSLSETKHRLFIG 194
+ K G+ + +++ + G
Sbjct: 67 SLDGKIVDGRLIFVEVAKNAEEVRAG 92
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 280 SSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALK 339
S + LYV N+ N++ D L+++F G V V +P + G + FGF+ FA A
Sbjct: 319 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 378
Query: 340 AVKETEKYEIDGQVLEVVLAKPQAE 364
A+ + EI G+ ++V Q E
Sbjct: 379 ALNLNGQLEIAGRAIKVSAVTDQTE 403
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VF +P A E D+ E G + +VRL+ DR++ +KG ++ F AI +
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 228
Query: 171 HNKEFKGKTLRCSLSETK------------------HRLFIGNVPKTVTEDEFRKAVDGV 212
+ F G+ + SE + +L++GN+ ++E + R+ +
Sbjct: 229 SGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAF 288
Query: 213 GPGVESIELIKDPQNPSKNRGFAFVLY 239
GP VE ++L DP+ + +GF F+ +
Sbjct: 289 GP-VELVQLPLDPET-GQCKGFGFIQF 313
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 280 SSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALK 339
S + LYV N+ N++ D L+++F G V V +P + G + FGF+ FA A
Sbjct: 330 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 389
Query: 340 AVKETEKYEIDGQVLEVVLAKPQAE 364
A+ + EI G+ ++V Q E
Sbjct: 390 ALNLNGQLEIAGRAIKVSAVTDQTE 414
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 280 SSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALK 339
S + LYV N+ N++ D L+++F G V V +P + G + FGF+ FA A
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 340 AVKETEKYEIDGQVLEVVLAKPQAE 364
A+ + EI G+ ++V Q E
Sbjct: 341 ALNLNGQLEIAGRAIKVSAVTDQTE 365
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 42/69 (60%)
Query: 112 FIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIH 171
F+GGL + L GD+++ +++ DR+TG ++G+ FV FK ++ + AIE ++
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 172 NKEFKGKTL 180
++ G+++
Sbjct: 71 GQDLDGRSI 79