Miyakogusa Predicted Gene

Lj1g3v5000600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5000600.1 Non Chatacterized Hit- tr|A5ARC1|A5ARC1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,91.49,4e-16,seg,NULL; GB DEF: T27C4.14 PROTEIN,NULL; EXPORTIN
4,7-RELATED,NULL; no description,Armadillo-like he,CUFF.33816.1
         (550 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04490.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   619   e-177

>AT3G04490.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana
            protein match is: unknown protein (TAIR:AT4G38092.1); Has
            75 Blast hits to 64 proteins in 20 species: Archae - 0;
            Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22;
            Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
            | chr3:1200816-1209713 FORWARD LENGTH=1118
          Length = 1118

 Score =  619 bits (1597), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 312/549 (56%), Positives = 384/549 (69%), Gaps = 51/549 (9%)

Query: 1    MRASIFSPRLMESIIWFLARWSHTYLMSCDGIGEKILDSSHHYEHSSKKALLSFFGEHKQ 60
            MR+SIFSPRLME++IWFLARWS TYL+    + E  L S+      S+  L ++F EH Q
Sbjct: 620  MRSSIFSPRLMEAVIWFLARWSFTYLLL---VEECNLGSNKLQSLPSRACLFTYFNEHNQ 676

Query: 61   GRLVLDIIVHISLITLTSYPGEKDLQGLTCYLLLHSLVQHKHICIHLVTLNSWHELATAF 120
            G+ VLDIIV ISL +LTSYPGEKDLQ LTC+ LLH+LV+ ++IC HL++L+SW  LA AF
Sbjct: 677  GKFVLDIIVRISLTSLTSYPGEKDLQELTCFQLLHALVRRRNICFHLLSLDSWRNLANAF 736

Query: 121  SGEKTLFLLDTAHQRSLAQTLVRSASGIKNLEASNQYVRNLMGHIAKYIVEISSKSNFKS 180
            + +KTLFLL++  QRSLAQTLV SA G+++ +ASNQYV++LM H+   +V++S+ S+ K+
Sbjct: 737  ANDKTLFLLNSVSQRSLAQTLVLSAYGMRSSDASNQYVKDLMAHMTSSLVDLSNSSDLKN 796

Query: 181  IAQQPDILLSVSCMLERLRGAASASEPRTQKAIYELGFSVMNPILVLLEVYKHESAVVYL 240
            +AQQPDI++ VSC+LERLRGAASA+EPRTQ+AIYE+G SVMNP+L               
Sbjct: 797  LAQQPDIIMLVSCVLERLRGAASATEPRTQRAIYEMGLSVMNPVL--------------- 841

Query: 241  LLKFVVGWVDGQITYLEAQETAAVVDFCMRLLQLYSSHNIGKIXXXXXXXXXXEAKTDQY 300
                                         RLL++Y      +I          EAKT++Y
Sbjct: 842  -----------------------------RLLEVYKH----EISLSLSSTLLNEAKTEKY 868

Query: 301  RDXXXXXXXXXXXXXKDMIDFSSDSIETQGTNISQVVYFGLHIVTPLISMDLLKYPKLCH 360
            +D             KDM+DFSSDSIETQ TNISQVVYFGLHI+TPLI+++LLKYPKLC 
Sbjct: 869  KDLRALLQLLSHLCSKDMVDFSSDSIETQSTNISQVVYFGLHIITPLITLELLKYPKLCF 928

Query: 361  DYFSLLSHMLEVYPETFAQLNREAFAHVLGTLDFGLHHQDADVVSKCLRALQALASYHYK 420
            DYFSL+SHMLEVYPET AQLN +AF+HVL T+DFGLH QD D+V+ CLRAL+ALASYHYK
Sbjct: 929  DYFSLISHMLEVYPETLAQLNNDAFSHVLTTVDFGLHQQDVDIVTMCLRALKALASYHYK 988

Query: 421  GAANGNIGLGLHGVGLEDSSGKIQEGXXXXXXXXXXXXXXXEDYSSDLISVAADALLPLI 480
                GN GLG H  G  D +G   EG               EDYS+DL+S AADAL PLI
Sbjct: 989  EKNAGNSGLGSHAAGHTDPNGVFHEGILSRFLRTLLHFLLFEDYSTDLVSTAADALFPLI 1048

Query: 481  LCEQGLYQRLGNELIERLANPTLRSRLANALHALTSANQLSSSLDRINYQRFRKNLNIFL 540
            LCE  LYQ LGNELIE+ ANP  ++RLANAL  LT++NQLSSSLDR+NYQRFRKNLN FL
Sbjct: 1049 LCEPNLYQGLGNELIEKQANPNFKTRLANALQVLTTSNQLSSSLDRLNYQRFRKNLNNFL 1108

Query: 541  VEVRGFLRT 549
            VEVRGFL+T
Sbjct: 1109 VEVRGFLKT 1117