Miyakogusa Predicted Gene

Lj1g3v4998360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4998360.1 Non Chatacterized Hit- tr|K3ZJU5|K3ZJU5_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si026850,60.76,1e-18,SSXT,SSXT; seg,NULL; SYNOVIAL SARCOMA
ASSOCIATED SS18 PROTEIN,SSXT,CUFF.33788.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family prot...   133   1e-31
AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:3...    96   2e-20
AT1G01160.1 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:7...    86   2e-17
AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:7...    71   4e-13

>AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family
          protein | chr5:10647831-10649620 REVERSE LENGTH=210
          Length = 210

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 13 AAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLTECAENQARLQRNLMYLAAIADSQ 72
          A YYP+NVT+DHIQQYLDENKSLILKIVESQNSGKL+ECAENQARLQRNLMYLAAIADSQ
Sbjct: 13 AGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ 72

Query: 73 PQPPNMPGQYPSG 85
          PQPP++  QY S 
Sbjct: 73 PQPPSVHSQYGSA 85


>AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 |
          chr4:357675-358928 FORWARD LENGTH=223
          Length = 223

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 52/59 (88%)

Query: 18 NNVTTDHIQQYLDENKSLILKIVESQNSGKLTECAENQARLQRNLMYLAAIADSQPQPP 76
          NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+NLMYLAAIAD+QPQPP
Sbjct: 19 NNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQPQPP 77


>AT1G01160.1 | Symbols: GIF2 | GRF1-interacting factor 2 |
          chr1:72583-73883 FORWARD LENGTH=195
          Length = 195

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 48/55 (87%)

Query: 18 NNVTTDHIQQYLDENKSLILKIVESQNSGKLTECAENQARLQRNLMYLAAIADSQ 72
          NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+NLMYLAAIAD+Q
Sbjct: 20 NNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 74


>AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 |
           chr1:72583-73883 FORWARD LENGTH=229
          Length = 229

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 39/45 (86%)

Query: 28  YLDENKSLILKIVESQNSGKLTECAENQARLQRNLMYLAAIADSQ 72
           YLDENK LI+ I+E+QN GKL ECA+ QA LQ+NLMYLAAIAD+Q
Sbjct: 64  YLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 108