Miyakogusa Predicted Gene

Lj1g3v4919790.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4919790.1 tr|F4J7C4|F4J7C4_ARATH F-actin-capping protein
subunit alpha OS=Arabidopsis thaliana GN=At3g05520
PE,61.9,5e-17,F-actin_cap_A,WASH complex, F-actin capping protein,
alpha subunit; F-ACTIN-CAPPING PROTEIN SUBUNIT ,CUFF.33600.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05520.2 | Symbols:  | Subunits of heterodimeric actin filame...    95   9e-21
AT3G05520.1 | Symbols:  | Subunits of heterodimeric actin filame...    95   1e-20

>AT3G05520.2 | Symbols:  | Subunits of heterodimeric actin
          filament capping protein Capz superfamily |
          chr3:1598611-1601437 FORWARD LENGTH=382
          Length = 382

 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 54/63 (85%)

Query: 15 QKVEIAKWFLLNSPPGEIQYVAKDVKSILNNDDLFNEAATEAFPVYNLTHLISLQLPNRT 74
          QK EIAKWF LN+P GEI YVAKD+K++L++++++NEAA EAFPVYN TH+I L++P+  
Sbjct: 17 QKKEIAKWFFLNAPAGEINYVAKDLKAVLSDEEVYNEAAMEAFPVYNKTHMICLEMPSGA 76

Query: 75 GDV 77
          GDV
Sbjct: 77 GDV 79


>AT3G05520.1 | Symbols:  | Subunits of heterodimeric actin
          filament capping protein Capz superfamily |
          chr3:1598611-1601134 FORWARD LENGTH=308
          Length = 308

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 54/63 (85%)

Query: 15 QKVEIAKWFLLNSPPGEIQYVAKDVKSILNNDDLFNEAATEAFPVYNLTHLISLQLPNRT 74
          QK EIAKWF LN+P GEI YVAKD+K++L++++++NEAA EAFPVYN TH+I L++P+  
Sbjct: 17 QKKEIAKWFFLNAPAGEINYVAKDLKAVLSDEEVYNEAAMEAFPVYNKTHMICLEMPSGA 76

Query: 75 GDV 77
          GDV
Sbjct: 77 GDV 79