Miyakogusa Predicted Gene
- Lj1g3v4898010.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4898010.2 Non Chatacterized Hit- tr|H2MUX6|H2MUX6_ORYLA
Uncharacterized protein OS=Oryzias latipes GN=WDR89
PE,31.17,3e-18,WD40,WD40 repeat; WD40
repeat-like,WD40-repeat-containing domain; WD_REPEATS_2,WD40 repeat;
WD_REPEA,CUFF.33544.2
(284 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47790.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 398 e-111
AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 51 1e-06
AT1G15440.2 | Symbols: PWP2 | periodic tryptophan protein 2 | ch... 49 3e-06
AT1G15440.1 | Symbols: PWP2, ATPWP2 | periodic tryptophan protei... 49 3e-06
AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family protei... 49 3e-06
>AT2G47790.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:19571102-19572946 REVERSE LENGTH=392
Length = 392
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/277 (69%), Positives = 223/277 (80%), Gaps = 4/277 (1%)
Query: 11 EQPSPPTP-NNVKRFGLKNSIQTNFGDDYVFQIIPKDDWTAMAVSLSTNAVKLYSPVAGQ 69
Q S +P NVK+FGLKNSIQTNFG DYVFQI+PK DWTA+AVSLSTN VKLYSPV GQ
Sbjct: 15 RQLSDSSPAQNVKKFGLKNSIQTNFGSDYVFQIVPKIDWTAIAVSLSTNTVKLYSPVTGQ 74
Query: 70 YYGDFKGHSSTINQILFSGPS--NPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEVF 127
YYG+ KGHS T+NQI FS S +PHVL+SCSSDGTIR+WDTR+FQQVS ID G QE+F
Sbjct: 75 YYGECKGHSDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSRIDTGNDQEIF 134
Query: 128 SISLGGPNGNLIAAGCKSKILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERGKLISASE 187
S S GG NL+A GCK ++L WDWRN KQ+ACLE+SH++DVTQVHFVP++ KL+SAS
Sbjct: 135 SFSYGGAADNLLAGGCKEQVLLWDWRNSKQVACLEESHMDDVTQVHFVPNKPNKLLSASV 194
Query: 188 DGLICTFDTTGDINDDDHLESVINVGTSIAKVGLFGESYQKLWCLTHIETLGVWDWKDGR 247
DGLIC F+T GDINDDDHLESVINVGTSI K+G G+ Y+KLWCLTHIETL +W+W+DG
Sbjct: 195 DGLICLFNTEGDINDDDHLESVINVGTSIGKIGFLGDGYKKLWCLTHIETLSIWNWEDGS 254
Query: 248 NEVNFSDARTLASESWNLDHVDYFVDCHYSKEAEKLW 284
EVN AR LAS+SW D+VDYFVDCH E LW
Sbjct: 255 CEVNLEKARELASDSWTQDNVDYFVDCH-CPGGEDLW 290
>AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:1207759-1209066 FORWARD LENGTH=333
Length = 333
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 74 FKGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEVFSISLGG 133
++GHSS I+ + +S S+ H S S D T+R WD R+ + + G + VF ++
Sbjct: 81 YEGHSSGISDLAWS--SDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNP 138
Query: 134 PNGNLIAAGCKSKILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERGKLI-SASEDG 189
P+ +++ I W+ + K + ++ +H ++ VHF D G LI SAS DG
Sbjct: 139 PSNLIVSGSFDETIRIWEVKTGKCVRMIK-AHSMPISSVHFNRD--GSLIVSASHDG 192
>AT1G15440.2 | Symbols: PWP2 | periodic tryptophan protein 2 |
chr1:5306159-5309460 REVERSE LENGTH=860
Length = 860
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 47 DWTAMAVSLSTNAVKLYSPVAGQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGTIRA 106
D +A N VK+++ ++G + F H++ + + F ++ H L S S DGT+RA
Sbjct: 360 DSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFM--ADNHSLLSASLDGTVRA 417
Query: 107 WDTRTFQQVSTIDAGPSQEVFSISLGGPNGNLIAAGCKSKILFWDWRNRK-QIACLEDSH 165
WD + ++ T ++ S++ P+G+++ AG + W + QI + H
Sbjct: 418 WDFKRYKNYKTYTTPTPRQFVSLT-ADPSGDVVCAGTLDSFEIFVWSKKTGQIKDILSGH 476
Query: 166 VEDVTQVHFVP 176
V + F P
Sbjct: 477 EAPVHGLMFSP 487
>AT1G15440.1 | Symbols: PWP2, ATPWP2 | periodic tryptophan protein 2
| chr1:5306159-5309460 REVERSE LENGTH=900
Length = 900
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 47 DWTAMAVSLSTNAVKLYSPVAGQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGTIRA 106
D +A N VK+++ ++G + F H++ + + F ++ H L S S DGT+RA
Sbjct: 400 DSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFM--ADNHSLLSASLDGTVRA 457
Query: 107 WDTRTFQQVSTIDAGPSQEVFSISLGGPNGNLIAAGCKSKILFWDWRNRK-QIACLEDSH 165
WD + ++ T ++ S++ P+G+++ AG + W + QI + H
Sbjct: 458 WDFKRYKNYKTYTTPTPRQFVSLT-ADPSGDVVCAGTLDSFEIFVWSKKTGQIKDILSGH 516
Query: 166 VEDVTQVHFVP 176
V + F P
Sbjct: 517 EAPVHGLMFSP 527
>AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family protein /
small nuclear ribonucleoprotein Prp4p-related |
chr2:17304319-17306855 REVERSE LENGTH=554
Length = 554
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 75 KGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEVFSISLGGP 134
+GHS ++ I F + + SC D R WD RT + + + G + VFS++ P
Sbjct: 378 EGHSRSVYGIAFQ--QDGALAASCGLDSLARVWDLRTGRSI-LVFQGHIKPVFSVNFS-P 433
Query: 135 NGNLIAAGCK-SKILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERGKLISASED 188
NG +A+G + ++ WD R RK + + +H V+QV + P E L +AS D
Sbjct: 434 NGYHLASGGEDNQCRIWDLRMRKSLYIIP-AHANLVSQVKYEPQEGYFLATASYD 487