Miyakogusa Predicted Gene

Lj1g3v4862950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4862950.1 Non Chatacterized Hit- tr|D7M453|D7M453_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,39.9,7e-19,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.33472.1
         (196 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   112   1e-25

>AT4G02090.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: N-terminal
           protein myristoylation; LOCATED IN: cellular_component
           unknown; EXPRESSED IN: root; Has 132 Blast hits to 132
           proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:923122-923730 FORWARD LENGTH=202
          Length = 202

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 106/208 (50%), Gaps = 26/208 (12%)

Query: 1   MGNHISSF---PASDATGKIVYCDGSVQEFDQPLTVAELMLEHPQQVVVEF--------H 49
           MGN   S     A  A GK+V  DG VQ  ++  TVAE+MLE+PQ VVVEF        +
Sbjct: 1   MGNVAGSRKLDAAGMAAGKVVLSDGRVQNLEEETTVAEIMLENPQHVVVEFDPSSISFNN 60

Query: 50  SALNHQKRPTPLPADKKLEMKKTYVMLPMKR--GKPVG-----LSGEDCHRVLSIVNSSL 102
            A   +++  PLPADK LE  K Y++LP KR  G+        L+ E+  ++L    + +
Sbjct: 61  DAKTVKRKLAPLPADKTLEPGKIYLVLPAKRSGGRAAKSSSAVLTSEEMRKMLFSATAMV 120

Query: 103 HSNYLMCSGFLPWI-ARVFKTESPA-NGVAETLQIKEERYDFSEFLPEMIEERPEYMSRQ 160
            S++    G LPW   R +K  +PA + V     +     +  E      E+RPE++SRQ
Sbjct: 121 RSSFSYYEGILPWFTTRSYKNNNPATDTVVAATSVGRLEAEMEE------EDRPEFLSRQ 174

Query: 161 LSGKEWKPSLDTXXXXXXXXXLSRWFFL 188
           LSG+ WKPSLD          + + F L
Sbjct: 175 LSGRGWKPSLDPIREKKAKKKIHQRFLL 202