Miyakogusa Predicted Gene

Lj1g3v4830130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830130.1 Non Chatacterized Hit- tr|I1NBJ2|I1NBJ2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32846
PE,45.84,0,seg,NULL; HLH, helix-loop-helix DNA-binding
domain,Helix-loop-helix domain; HLH,Helix-loop-helix dom,CUFF.33362.1
         (470 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin...    93   3e-19
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin...    93   3e-19
AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-l...    89   7e-18
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact...    85   1e-16
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l...    84   2e-16
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l...    84   2e-16
AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting fact...    80   2e-15
AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting fact...    80   2e-15
AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting fact...    80   2e-15
AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting fact...    80   2e-15
AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact...    73   5e-13
AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact...    73   5e-13
AT4G28790.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    73   5e-13
AT4G28800.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    70   4e-12
AT4G28811.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    69   5e-12
AT4G28815.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    69   1e-11
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b...    67   3e-11
AT4G28790.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    66   6e-11
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA...    66   6e-11
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b...    65   1e-10
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032...    64   2e-10
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508...    63   5e-10
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348...    60   4e-09
AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting fact...    57   2e-08
AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 | ...    57   2e-08
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fact...    57   2e-08
AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 | ...    57   3e-08
AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA...    57   4e-08
AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA...    57   4e-08
AT1G03040.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    57   4e-08
AT1G03040.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    57   4e-08
AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA...    56   5e-08
AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic helix-loop...    52   6e-07
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17...    51   1e-06
AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17...    51   2e-06
AT1G68920.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    51   2e-06

>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
           factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
          Length = 524

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 72/128 (56%), Gaps = 5/128 (3%)

Query: 249 ERAIASSSVCSIEA----SYNPNFG-SRKHXXXXXXXXXXXXXXEETEDYTVKEVQARDG 303
           E+A+  SSV S  +    S +P+    RKH              EE+ D   +   +R G
Sbjct: 277 EKAVVCSSVGSGNSLDGPSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTG 336

Query: 304 TRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQL 363
              KR RSAE+HNLSE             L+ELIPNCNK+DKASMLD+AI+YLK+L+ Q+
Sbjct: 337 LGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQV 396

Query: 364 QIMSMGRG 371
           QIMSM  G
Sbjct: 397 QIMSMASG 404


>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
           factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
          Length = 524

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 72/128 (56%), Gaps = 5/128 (3%)

Query: 249 ERAIASSSVCSIEA----SYNPNFG-SRKHXXXXXXXXXXXXXXEETEDYTVKEVQARDG 303
           E+A+  SSV S  +    S +P+    RKH              EE+ D   +   +R G
Sbjct: 277 EKAVVCSSVGSGNSLDGPSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTG 336

Query: 304 TRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQL 363
              KR RSAE+HNLSE             L+ELIPNCNK+DKASMLD+AI+YLK+L+ Q+
Sbjct: 337 LGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQV 396

Query: 364 QIMSMGRG 371
           QIMSM  G
Sbjct: 397 QIMSMASG 404


>AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-like
           1 | chr2:19295617-19297678 REVERSE LENGTH=416
          Length = 416

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 87/174 (50%), Gaps = 19/174 (10%)

Query: 288 EETEDYTVKEVQARDGTRI-KRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKA 346
           +E++D    +V AR    + KR+RS E+H L E             L++L+PNC K DKA
Sbjct: 207 DESDDAKT-QVHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDKA 265

Query: 347 SMLDDAIDYLKTLKHQLQIMSMGRGXXX-XXXXXXXXXXXXGVGM----GGIPCNPPQFS 401
           S+LD+AI Y++TL+ Q+Q+MSMG G                G+GM       P + PQF 
Sbjct: 266 SLLDEAIKYMRTLQLQVQMMSMGNGLIRPPTMLPMGHYSPMGLGMHMGAAATPTSIPQF- 324

Query: 402 IP------SLPGFTDNRLQMFGFSNQQIPNMSIPNTPFFPIIGNSSSTQQPFIA 449
           +P        PG  +   QM  F N   P+  IPNTP F  + N S   QPF+ 
Sbjct: 325 LPMNVQATGFPGMNNAPPQMLSFLNH--PSGLIPNTPIFSPLENCS---QPFVV 373


>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
           3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
          Length = 407

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 1/83 (1%)

Query: 288 EETEDYTVKEVQAR-DGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKA 346
           +ETE  + +  QAR   T  KR R+AE+HNLSE             L+ELIP CNK DKA
Sbjct: 190 DETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKA 249

Query: 347 SMLDDAIDYLKTLKHQLQIMSMG 369
           SMLD+AI+Y+K+L+ Q+Q+MSMG
Sbjct: 250 SMLDEAIEYMKSLQLQIQMMSMG 272


>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
           5 | chr2:8704276-8706538 REVERSE LENGTH=478
          Length = 478

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 1/83 (1%)

Query: 288 EETEDYTVKEVQAR-DGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKA 346
           +ETE  + +  QAR   T  KR R+AE+HNLSE             L+ELIP CNK DKA
Sbjct: 261 DETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKA 320

Query: 347 SMLDDAIDYLKTLKHQLQIMSMG 369
           SMLD+AI+Y+K+L+ Q+Q+MSMG
Sbjct: 321 SMLDEAIEYMKSLQLQIQMMSMG 343


>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
           5 | chr2:8704525-8706538 REVERSE LENGTH=478
          Length = 478

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 1/83 (1%)

Query: 288 EETEDYTVKEVQAR-DGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKA 346
           +ETE  + +  QAR   T  KR R+AE+HNLSE             L+ELIP CNK DKA
Sbjct: 261 DETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKA 320

Query: 347 SMLDDAIDYLKTLKHQLQIMSMG 369
           SMLD+AI+Y+K+L+ Q+Q+MSMG
Sbjct: 321 SMLDEAIEYMKSLQLQIQMMSMG 343


>AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting factor
           3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=442
          Length = 442

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%)

Query: 290 TEDYTVKEVQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASML 349
           T+D T+    ++     +R R+AE+HNLSE             L+ELIP+C++ DKAS+L
Sbjct: 236 TDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASIL 295

Query: 350 DDAIDYLKTLKHQLQIMSMGRG 371
           D+AIDYLK+L+ QLQ+M MG G
Sbjct: 296 DEAIDYLKSLQMQLQVMWMGSG 317


>AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting factor
           3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
          Length = 444

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%)

Query: 290 TEDYTVKEVQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASML 349
           T+D T+    ++     +R R+AE+HNLSE             L+ELIP+C++ DKAS+L
Sbjct: 236 TDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASIL 295

Query: 350 DDAIDYLKTLKHQLQIMSMGRG 371
           D+AIDYLK+L+ QLQ+M MG G
Sbjct: 296 DEAIDYLKSLQMQLQVMWMGSG 317


>AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting factor
           3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
          Length = 444

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%)

Query: 290 TEDYTVKEVQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASML 349
           T+D T+    ++     +R R+AE+HNLSE             L+ELIP+C++ DKAS+L
Sbjct: 236 TDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASIL 295

Query: 350 DDAIDYLKTLKHQLQIMSMGRG 371
           D+AIDYLK+L+ QLQ+M MG G
Sbjct: 296 DEAIDYLKSLQMQLQVMWMGSG 317


>AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting factor
           3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
          Length = 444

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%)

Query: 290 TEDYTVKEVQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASML 349
           T+D T+    ++     +R R+AE+HNLSE             L+ELIP+C++ DKAS+L
Sbjct: 236 TDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASIL 295

Query: 350 DDAIDYLKTLKHQLQIMSMGRG 371
           D+AIDYLK+L+ QLQ+M MG G
Sbjct: 296 DEAIDYLKSLQMQLQVMWMGSG 317


>AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
           factor 4 | chr2:17887003-17888823 FORWARD LENGTH=428
          Length = 428

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 307 KRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIM 366
           +R R+AE+HNLSE             L+ELIP+C+K DKAS+LD+AIDYLK+L+ QLQ+M
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 313


>AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
           factor 4 | chr2:17887003-17888823 FORWARD LENGTH=430
          Length = 430

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 307 KRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIM 366
           +R R+AE+HNLSE             L+ELIP+C+K DKAS+LD+AIDYLK+L+ QLQ+M
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 313


>AT4G28790.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:14218329-14220173 FORWARD
           LENGTH=413
          Length = 413

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query: 299 QARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKT 358
           +ARD T  KR R+A +H LSE             L+EL+P C K D++SMLDD I+Y+K+
Sbjct: 266 EARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKS 325

Query: 359 LKHQLQIMSMG 369
           L+ Q+Q+ SMG
Sbjct: 326 LQSQIQMFSMG 336


>AT4G28800.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:14221970-14224075 FORWARD
           LENGTH=445
          Length = 445

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 56/110 (50%)

Query: 257 VCSIEASYNPNFGSRKHXXXXXXXXXXXXXXEETEDYTVKEVQARDGTRIKRRRSAEIHN 316
             ++EA+  P+ G  K                +  + T    +AR  T  KR R+AE+HN
Sbjct: 202 AVAVEAAGTPSSGVCKAETEPVQIQPATESKLKAREETHGTEEARGSTSRKRSRTAEMHN 261

Query: 317 LSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIM 366
           L+E            TL++LIP CNK  K S LDDAI+Y+K+L+ Q+Q M
Sbjct: 262 LAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQSQIQGM 311


>AT4G28811.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:14225335-14227840 FORWARD
           LENGTH=544
          Length = 544

 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 288 EETEDYTVKEVQ----ARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKI 343
           ++  + T+ E+Q    A   T  KR R+A++HNLSE            TL+EL+P C K 
Sbjct: 331 DKKREETIAEIQGTEEAHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKT 390

Query: 344 DKASMLDDAIDYLKTLKHQLQIMS 367
           DK SML+D I+Y+K+L+ Q+Q+MS
Sbjct: 391 DKVSMLEDVIEYVKSLQLQIQMMS 414


>AT4G28815.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:14228719-14230288 FORWARD
           LENGTH=307
          Length = 307

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 299 QARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKT 358
           +AR  T  KR R+AE+HNL+E            TL++LIP CNK  K SML+D I+Y+K+
Sbjct: 139 EARGSTSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKS 198

Query: 359 LKHQLQI----MSMGRGXXXXXXXXXXXXXXXGVGMGGIPCNPPQFSIPSLPGFTDNRLQ 414
           L+ Q+      M+MG                 GVG       PP++  P++  F  +R+ 
Sbjct: 199 LEMQINQFMPHMAMGMNQPPAYIPFPSQAHMAGVGPS---YPPPRYPFPNIQTFDPSRVW 255

Query: 415 M 415
           +
Sbjct: 256 L 256


>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17414167-17415945
           FORWARD LENGTH=373
          Length = 373

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 42/62 (67%)

Query: 310 RSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIMSMG 369
           R+AE+HNLSE             L+ LIPN NK DKASMLD+AI+YLK L+ Q+Q+++M 
Sbjct: 197 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMR 256

Query: 370 RG 371
            G
Sbjct: 257 NG 258


>AT4G28790.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:14218329-14219887 FORWARD
           LENGTH=340
          Length = 340

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%)

Query: 299 QARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKT 358
           +ARD T  KR R+A +H LSE             L+EL+P C K D++SMLDD I+Y+K+
Sbjct: 266 EARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKS 325

Query: 359 LKHQLQ 364
           L+ Q+Q
Sbjct: 326 LQSQIQ 331


>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17863-19848
           FORWARD LENGTH=399
          Length = 399

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%)

Query: 289 ETEDYTVKEVQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASM 348
           + ED   K+   +     KR R+A IHN SE            TL++L+PN +K DKASM
Sbjct: 192 QMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASM 251

Query: 349 LDDAIDYLKTLKHQLQIMS 367
           LD+ I+YLK L+ Q+ +MS
Sbjct: 252 LDEVIEYLKQLQAQVSMMS 270


>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr5:26785332-26786338
           REVERSE LENGTH=210
          Length = 210

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%)

Query: 296 KEVQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDY 355
           K   A+    +KR   A+ HNLSE             L++LIPN NK DKASMLD+AI+Y
Sbjct: 79  KRSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEY 138

Query: 356 LKTLKHQLQIMSMGRG 371
           LK L+ Q+Q +++  G
Sbjct: 139 LKQLQLQVQTLAVMNG 154


>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
           chr2:10319646-10322177 REVERSE LENGTH=350
          Length = 350

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query: 299 QARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKT 358
           Q+R   R +R ++ + H+++E             L+EL+PN NK DKASMLD+ IDY+K 
Sbjct: 133 QSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKF 192

Query: 359 LKHQLQIMSMGR 370
           L+ Q++++SM R
Sbjct: 193 LQLQVKVLSMSR 204


>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
           chr4:15079489-15081606 REVERSE LENGTH=310
          Length = 310

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 46/72 (63%)

Query: 299 QARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKT 358
           Q +   R +R ++ + H+++E            +L+EL+PN NK DKASMLD+ IDY+K 
Sbjct: 125 QTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKF 184

Query: 359 LKHQLQIMSMGR 370
           L+ Q++++SM R
Sbjct: 185 LQLQVKVLSMSR 196


>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
           chr5:23483670-23484889 REVERSE LENGTH=297
          Length = 297

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 47/73 (64%)

Query: 298 VQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLK 357
           V+ +   R +R ++ + H+++E            +L+EL+PN NK DKASMLD+ I+Y++
Sbjct: 93  VRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVR 152

Query: 358 TLKHQLQIMSMGR 370
            L+ Q++++SM R
Sbjct: 153 FLQLQVKVLSMSR 165


>AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting factor
           3-like 2 | chr3:22989097-22990495 REVERSE LENGTH=346
          Length = 346

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 306 IKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQI 365
           +KR+R+AE +N  E            TL+ L+PN +K D  SMLD+AI+Y+  L+ Q+Q+
Sbjct: 167 VKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQM 226

Query: 366 MSMG 369
           M+MG
Sbjct: 227 MTMG 230


>AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 |
           chr5:24638873-24640439 REVERSE LENGTH=366
          Length = 366

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 307 KRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIM 366
           +R R+A IHN SE            TL++L+P  +K DK S+LDD I++LK L+ Q+Q M
Sbjct: 163 RRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFM 222

Query: 367 SM 368
           S+
Sbjct: 223 SL 224


>AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
           3-like 2 | chr3:22989097-22990546 REVERSE LENGTH=363
          Length = 363

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 306 IKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQI 365
           +KR+R+AE +N  E            TL+ L+PN +K D  SMLD+AI+Y+  L+ Q+Q+
Sbjct: 184 VKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQM 243

Query: 366 MSMG 369
           M+MG
Sbjct: 244 MTMG 247


>AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 |
           chr5:24638873-24640031 REVERSE LENGTH=278
          Length = 278

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 307 KRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIM 366
           +R R+A IHN SE            TL++L+P  +K DK S+LDD I++LK L+ Q+Q M
Sbjct: 75  RRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFM 134

Query: 367 SM 368
           S+
Sbjct: 135 SL 136


>AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:1137968-1140306
           REVERSE LENGTH=310
          Length = 310

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%)

Query: 301 RDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLK 360
           R   R +R ++ + H+++E             L+EL+P  NK D+A+M+D+ +DY+K L+
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202

Query: 361 HQLQIMSMGR 370
            Q++++SM R
Sbjct: 203 LQVKVLSMSR 212


>AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:1137968-1140306
           REVERSE LENGTH=310
          Length = 310

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%)

Query: 301 RDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLK 360
           R   R +R ++ + H+++E             L+EL+P  NK D+A+M+D+ +DY+K L+
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202

Query: 361 HQLQIMSMGR 370
            Q++++SM R
Sbjct: 203 LQVKVLSMSR 212


>AT1G03040.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:704279-706457 REVERSE
           LENGTH=297
          Length = 297

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 44/70 (62%)

Query: 301 RDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLK 360
           R   R +R ++ + H+++E            +L+EL+P  NK D+A+M+D+ +DY+K L+
Sbjct: 136 RPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLR 195

Query: 361 HQLQIMSMGR 370
            Q++++SM R
Sbjct: 196 LQVKVLSMSR 205


>AT1G03040.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:704279-706457 REVERSE
           LENGTH=302
          Length = 302

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 44/70 (62%)

Query: 301 RDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLK 360
           R   R +R ++ + H+++E            +L+EL+P  NK D+A+M+D+ +DY+K L+
Sbjct: 141 RPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLR 200

Query: 361 HQLQIMSMGR 370
            Q++++SM R
Sbjct: 201 LQVKVLSMSR 210


>AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:1137968-1140117
           REVERSE LENGTH=247
          Length = 247

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%)

Query: 301 RDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLK 360
           R   R +R ++ + H+++E             L+EL+P  NK D+A+M+D+ +DY+K L+
Sbjct: 80  RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 139

Query: 361 HQLQIMSMGR 370
            Q++++SM R
Sbjct: 140 LQVKVLSMSR 149


>AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic
           helix-loop-helix (bHLH) DNA-binding superfamily protein
           | chr1:465933-467685 REVERSE LENGTH=292
          Length = 292

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 16/82 (19%)

Query: 288 EETEDYTVKEVQA--RDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDK 345
           +E+E++T +EV +  R G++ +RRR  ++ N                L++L+PNC+K DK
Sbjct: 124 DESEEFT-REVPSVTRKGSK-RRRRDEKMSN------------KMRKLQQLVPNCHKTDK 169

Query: 346 ASMLDDAIDYLKTLKHQLQIMS 367
            S+LD  I+Y+K L+ QLQ+MS
Sbjct: 170 VSVLDKTIEYMKNLQLQLQMMS 191


>AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 |
           chr4:17243699-17244965 FORWARD LENGTH=304
          Length = 304

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 294 TVKEVQARDGTRIKRRR--SAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKI-DKASMLD 350
           T  E+Q  D   ++ RR  + + H+L+E             L++++P CNK+  KA MLD
Sbjct: 129 TSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLD 188

Query: 351 DAIDYLKTLKHQLQIMSM 368
           + I+Y+++L+ Q++ +SM
Sbjct: 189 EIINYVQSLQQQVEFLSM 206


>AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 |
           chr4:17243699-17244965 FORWARD LENGTH=302
          Length = 302

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 294 TVKEVQARDGTRIKRRR--SAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKI-DKASMLD 350
           T  E+Q  D   ++ RR  + + H+L+E             L++++P CNK+  KA MLD
Sbjct: 129 TSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLD 188

Query: 351 DAIDYLKTLKHQLQIMSM 368
           + I+Y+++L+ Q++ +SM
Sbjct: 189 EIINYVQSLQQQVEFLSM 206


>AT1G68920.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:25915620-25917675 FORWARD
           LENGTH=485
          Length = 485

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 301 RDG---TRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKI-DKASMLDDAIDYL 356
           +DG    R +R ++   H+L+E             L++L+P CNK+  KA MLD+ I+Y+
Sbjct: 296 KDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYV 355

Query: 357 KTLKHQLQIMSM 368
           ++L+ Q++ +SM
Sbjct: 356 QSLQRQVEFLSM 367