Miyakogusa Predicted Gene

Lj1g3v4717440.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4717440.2 tr|G7KQW9|G7KQW9_MEDTR Signal recognition
particle 54 kDa protein OS=Medicago truncatula
GN=MTR_7g10,92.5,0,SRP54,Signal recognition particle, SRP54 subunit,
GTPase domain; SIGNAL RECOGNITION PARTICLE PROTEIN,CUFF.33101.2
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast...   416   e-117
AT1G48900.2 | Symbols:  | Signal recognition particle, SRP54 sub...   132   3e-31
AT1G48900.1 | Symbols:  | Signal recognition particle, SRP54 sub...   132   3e-31
AT5G49500.1 | Symbols:  | Signal recognition particle, SRP54 sub...   124   7e-29
AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition p...   114   6e-26
AT2G45770.1 | Symbols: CPFTSY, FRD4 | signal recognition particl...   109   2e-24
AT2G45770.2 | Symbols: CPFTSY | signal recognition particle rece...   108   2e-24
AT4G30600.1 | Symbols:  | signal recognition particle receptor a...    83   2e-16

>AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast
           signal recognition particle 54 kDa subunit |
           chr5:1060265-1063257 REVERSE LENGTH=564
          Length = 564

 Score =  416 bits (1070), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/239 (85%), Positives = 222/239 (92%)

Query: 1   MLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTA 60
           ML+AGD+YRPAAIDQL ILG+QVGVPVYTAGTDVKP++IA+QGL+EA           TA
Sbjct: 208 MLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTA 267

Query: 61  GRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDG 120
           GRLQIDK MMDELK+VKK LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDG
Sbjct: 268 GRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDG 327

Query: 121 DSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ 180
           DSRGGAALSVKEVSGKPIKLVGRGERM+DLEPFYPDRMAGRILGMGDVLSFVEKA EVM+
Sbjct: 328 DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMR 387

Query: 181 QEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQIREAEKNL 239
           QEDAE LQ+KIMSAKFDFNDFLKQTRAVA+MGS++RV+GMIPGM KV+PAQIREAEKNL
Sbjct: 388 QEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNL 446


>AT1G48900.2 | Symbols:  | Signal recognition particle, SRP54
           subunit protein | chr1:18085031-18087743 REVERSE
           LENGTH=431
          Length = 431

 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 115/224 (51%)

Query: 2   LVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTAG 61
           LV  D +R  A DQL     +  +P Y + T+  P +IA +G++             T+G
Sbjct: 134 LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSG 193

Query: 62  RLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGD 121
           R + + ++ +E+++V ++  P  V+ V+D+  GQ A      F   + +   I+TK+DG 
Sbjct: 194 RHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGH 253

Query: 122 SRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ 181
           ++GG ALS    +  P+  +G GE MD+ E F       R+LGMGD   FV+K QEV+ +
Sbjct: 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPK 313

Query: 182 EDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMS 225
           +   +L EK+    F       Q + +  MG +  V  M+PG+S
Sbjct: 314 DQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGIS 357


>AT1G48900.1 | Symbols:  | Signal recognition particle, SRP54
           subunit protein | chr1:18084972-18087743 REVERSE
           LENGTH=495
          Length = 495

 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 115/224 (51%)

Query: 2   LVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTAG 61
           LV  D +R  A DQL     +  +P Y + T+  P +IA +G++             T+G
Sbjct: 134 LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSG 193

Query: 62  RLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGD 121
           R + + ++ +E+++V ++  P  V+ V+D+  GQ A      F   + +   I+TK+DG 
Sbjct: 194 RHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGH 253

Query: 122 SRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ 181
           ++GG ALS    +  P+  +G GE MD+ E F       R+LGMGD   FV+K QEV+ +
Sbjct: 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPK 313

Query: 182 EDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMS 225
           +   +L EK+    F       Q + +  MG +  V  M+PG+S
Sbjct: 314 DQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGIS 357


>AT5G49500.1 | Symbols:  | Signal recognition particle, SRP54
           subunit protein | chr5:20077556-20080206 REVERSE
           LENGTH=497
          Length = 497

 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 110/223 (49%)

Query: 2   LVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTAG 61
           LV  D +R  A DQL     +  +P Y + T   P +IA +G++             T+G
Sbjct: 136 LVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSG 195

Query: 62  RLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGD 121
           R +   ++ +E++++ ++  P  V+ V+D+  GQ A      F   + +   I+TK+DG 
Sbjct: 196 RHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGH 255

Query: 122 SRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ 181
           ++GG  LS    +  P+  +G GE MD+ E F       R+LG GD+  FV K QEV+ +
Sbjct: 256 AKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPK 315

Query: 182 EDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGM 224
           +   +L E +   KF       Q + +  MG +  V  M+PGM
Sbjct: 316 DQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGM 358


>AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition
           particle 54 kDa subunit | chr1:5269173-5271947 REVERSE
           LENGTH=479
          Length = 479

 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 1/224 (0%)

Query: 2   LVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTAG 61
           LV  D +R  A DQL     +  +P Y + T+  P +IA +G++             T+G
Sbjct: 134 LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSG 193

Query: 62  RLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGD 121
           R +   ++ +E+++V ++  P  V+ V+D+  GQ A      F   + +   I+TK+DG 
Sbjct: 194 RHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGH 253

Query: 122 SRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ 181
           ++GG ALS    +  P+  +G GE MD+ E F       R+LG GD    V+K QEV+ +
Sbjct: 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPK 313

Query: 182 EDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMS 225
           +   +L E +    F       Q +   ++  ++++  M+PG+S
Sbjct: 314 DLQNELVENLSQGNFTLRSMYDQFQCSLRI-PLNQLFSMLPGIS 356


>AT2G45770.1 | Symbols: CPFTSY, FRD4 | signal recognition particle
           receptor protein, chloroplast (FTSY) |
           chr2:18851248-18853402 FORWARD LENGTH=366
          Length = 366

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 91/170 (53%), Gaps = 7/170 (4%)

Query: 1   MLVAGDIYRPAAIDQLTILGKQVGVPVYTA-GTDVKPSEIARQGLEEAXXXXXXXXXXXT 59
           ++ AGD +R AA DQL I  ++ G  +  A G   K + +  + ++             T
Sbjct: 196 LMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDT 255

Query: 60  AGRLQIDKAMMDELKEVKKSLN------PTEVLLVVDAMTGQEAAALVTTFNLEIGITGA 113
           +GRL  + ++M+EL   KK++       P E+LLV+D  TG         FN  +GITG 
Sbjct: 256 SGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGL 315

Query: 114 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRIL 163
           ILTKLDG +RGG  +SV E  G P+K +G GE ++DL+PF P+     I 
Sbjct: 316 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 365


>AT2G45770.2 | Symbols: CPFTSY | signal recognition particle
           receptor protein, chloroplast (FTSY) |
           chr2:18851248-18853402 FORWARD LENGTH=373
          Length = 373

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 91/170 (53%), Gaps = 7/170 (4%)

Query: 1   MLVAGDIYRPAAIDQLTILGKQVGVPVYTA-GTDVKPSEIARQGLEEAXXXXXXXXXXXT 59
           ++ AGD +R AA DQL I  ++ G  +  A G   K + +  + ++             T
Sbjct: 203 LMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDT 262

Query: 60  AGRLQIDKAMMDELKEVKKSLN------PTEVLLVVDAMTGQEAAALVTTFNLEIGITGA 113
           +GRL  + ++M+EL   KK++       P E+LLV+D  TG         FN  +GITG 
Sbjct: 263 SGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGL 322

Query: 114 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRIL 163
           ILTKLDG +RGG  +SV E  G P+K +G GE ++DL+PF P+     I 
Sbjct: 323 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 372


>AT4G30600.1 | Symbols:  | signal recognition particle receptor
           alpha subunit family protein | chr4:14938142-14940600
           REVERSE LENGTH=634
          Length = 634

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 11/162 (6%)

Query: 1   MLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTA 60
           M+ A D +R  A++QL    +++ +P++  G +  P+ +A++ ++EA           TA
Sbjct: 460 MMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTA 519

Query: 61  GRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIG----------I 110
           GR+Q ++ +M  L ++     P  VL V +A+ G +A   ++ FN ++           I
Sbjct: 520 GRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLI 579

Query: 111 TGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMDDLE 151
            G +LTK D  D + GAALS+  +SG P+  VG G+   DL+
Sbjct: 580 DGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCGQSYTDLK 621