Miyakogusa Predicted Gene

Lj1g3v4446650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4446650.1 tr|F2EI65|F2EI65_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2 SV=1,37.24,6e-17,
,NODE_48508_length_1395_cov_42.415771.path1.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03110.1 | Symbols: TRM82, AtTRM82 | Transducin/WD40 repeat-l...   127   3e-30

>AT1G03110.1 | Symbols: TRM82, AtTRM82 | Transducin/WD40 repeat-like
           superfamily protein | chr1:749359-751796 FORWARD
           LENGTH=427
          Length = 427

 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 1   MSCNSSSQKLSVIKVVSFAGDGFVPTCLGNIPSTGKLWMVTGVSSLPGSNYPSVARVRVI 60
           +SC+ ++  LS+ KV+   G+ F+PT +    S+  LWMV+G S+LPGSN+P  +RVRVI
Sbjct: 292 LSCDLTAHTLSITKVIKIPGESFIPTSIAVSASSRLLWMVSGASNLPGSNHPGFSRVRVI 351

Query: 61  SGIDGDQEPVVLGDDNIPGGEKLLQTLQGTASVDDNAFLAAAEAVKTAMCNLLVKKQYPA 120
           S ++ +   + L D+ IPGG KLL+ LQG  +++++   AAAEAV+ AM +LL+KKQY  
Sbjct: 352 SCLETESSSI-LEDEQIPGGTKLLEQLQGKVTIEESVMSAAAEAVRAAMSSLLMKKQYSE 410

Query: 121 ENREYRKKTRNDRK 134
           E RE+RK+TRND+K
Sbjct: 411 EKREFRKRTRNDKK 424