Miyakogusa Predicted Gene

Lj1g3v4435530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4435530.1 Non Chatacterized Hit- tr|I1N9I8|I1N9I8_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,58.9,0.00000000005,seg,NULL,
NODE_41709_length_822_cov_38.257908.path2.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02725.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   138   6e-34
AT4G02725.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    99   6e-22

>AT4G02725.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast,
           membrane; Has 35333 Blast hits to 34131 proteins in 2444
           species: Archae - 798; Bacteria - 22429; Metazoa - 974;
           Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
           - 9610 (source: NCBI BLink). | chr4:1206055-1207290
           FORWARD LENGTH=165
          Length = 165

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 73/94 (77%)

Query: 1   MEGYLNQLSLEYDSVWDTKPSWCQPWXXXXXXXXXXXXSWLVLQSVIVTSFISLLIGAWW 60
           MEG+L+ LSLEYDSVWDTKPSWCQPW            SW++L SVIV+S    +IGAWW
Sbjct: 70  MEGFLDNLSLEYDSVWDTKPSWCQPWTIMLTGLSIVACSWVILHSVIVSSLAVGVIGAWW 129

Query: 61  YIFLYSYPKGYSEMIAERRKRVTNGFEDTFGQSK 94
           YIFLYSYPK YSEMIAERRKRV +GFED +G++K
Sbjct: 130 YIFLYSYPKSYSEMIAERRKRVADGFEDIYGKNK 163


>AT4G02725.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast,
           membrane; Has 107 Blast hits to 107 proteins in 55
           species: Archae - 0; Bacteria - 69; Metazoa - 0; Fungi -
           0; Plants - 34; Viruses - 0; Other Eukaryotes - 4
           (source: NCBI BLink). | chr4:1206055-1207000 FORWARD
           LENGTH=139
          Length = 139

 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 51/69 (73%)

Query: 1   MEGYLNQLSLEYDSVWDTKPSWCQPWXXXXXXXXXXXXSWLVLQSVIVTSFISLLIGAWW 60
           MEG+L+ LSLEYDSVWDTKPSWCQPW            SW++L SVIV+S    +IGAWW
Sbjct: 70  MEGFLDNLSLEYDSVWDTKPSWCQPWTIMLTGLSIVACSWVILHSVIVSSLAVGVIGAWW 129

Query: 61  YIFLYSYPK 69
           YIFLYSYPK
Sbjct: 130 YIFLYSYPK 138