Miyakogusa Predicted Gene
- Lj1g3v3981460.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3981460.1 Non Chatacterized Hit- tr|K3YRK4|K3YRK4_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si016898,25.33,7e-18,GD2B,NULL; CTL TRANSPORTER,Choline
transporter-like; Choline_transpo,Choline transporter-like;
seg,N,CUFF.31738.1
(464 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03700.1 | Symbols: | Plasma-membrane choline transporter fa... 418 e-117
AT3G04440.1 | Symbols: | Plasma-membrane choline transporter fa... 418 e-117
AT5G17830.1 | Symbols: | Plasma-membrane choline transporter fa... 282 4e-76
AT5G13760.1 | Symbols: | Plasma-membrane choline transporter fa... 217 1e-56
AT1G25500.3 | Symbols: | Plasma-membrane choline transporter fa... 78 1e-14
AT1G25500.2 | Symbols: | Plasma-membrane choline transporter fa... 78 1e-14
AT1G25500.1 | Symbols: | Plasma-membrane choline transporter fa... 70 4e-12
>AT3G03700.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr3:916503-918327 FORWARD LENGTH=482
Length = 482
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/418 (49%), Positives = 277/418 (66%), Gaps = 5/418 (1%)
Query: 40 NKTTVAGQIVRRVFQILFYXXXXXXXXXXXXXXXYGLVSDSHTHHFHPRKWYPPLLASTV 99
+ T+AG++ R +F+ L + GL+S S THHFH +KWYPPLLAS
Sbjct: 44 TQQTIAGKLFRTLFKGLLFSQLTLISLLVIVLTIRGLISAS-THHFHLKKWYPPLLASVA 102
Query: 100 CAGILGFTWQWIISCHPTKAFKVAFWLSPLLTCAMGILFVCIGSPVSLSAGVIALVFAVI 159
+GI WQ I +P++A K FWLSP+LTC++GIL V IGS V G + ++FA+
Sbjct: 103 VSGIASLAWQCIFIYNPSRAVKATFWLSPILTCSVGILLVLIGSAVDAGIGAVFVLFAIT 162
Query: 160 QSLYGCWVSPRFEYATRILSVSIASPPEKTQGXXXXXXXXXXXXXXXXXAGIGGARALEN 219
QSLYGCW++PR EY +ILS++ A PP +T+ GIGGA +
Sbjct: 163 QSLYGCWITPRLEYTDKILSLATAFPPARTREVVCLSIIVSVVYSGFLVTGIGGATS--T 220
Query: 220 RTKLAPLFILVILLSLGWSMQFLKNAMQVTISRVKYVHFAGGAAEIDTRVAICDTIKYLT 279
RT L LFI VI++SL W+MQ +KN QV ISR +YV+FA G ++D A T+K+LT
Sbjct: 221 RTNLDILFISVIIISLAWTMQVIKNVQQVAISRARYVNFAHG-EDMDAWNAFRITMKHLT 279
Query: 280 GSVCIGSILVPIFGLFRGFARSMSLIGGHTDEFMFSCVSCYMGIASVLVNFGNRWGFVHV 339
GS+C+GS LVPI RG RS++L+ G +DE M+S C+ IA+ L+ GNRWGFVHV
Sbjct: 280 GSICVGSTLVPIIVFIRGSIRSVNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHV 339
Query: 340 GVYNKGFVQASSDVWEMF-NRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVSGIWSLAMH 398
G Y+KGF++ASSD W+ F + GLE+LID DLT FCF S V+ GA+ SL +GIW L +H
Sbjct: 340 GTYDKGFMEASSDTWKKFRSTTGLEKLIDSDLTSSFCFLSAVSVGAVSSLTAGIWMLLIH 399
Query: 399 KSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQFDSTIPVRLEQLH 456
K YA+EV++Y F+IGYF+ R+ +AW QACV AYYVAY+E+PQS +FD TIP R+++L
Sbjct: 400 KDYALEVTLYAFIIGYFVGRVGLAWLQACVLAYYVAYSEDPQSMRFDGTIPQRIQRLQ 457
>AT3G04440.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr3:1178718-1180537 FORWARD LENGTH=482
Length = 482
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/418 (49%), Positives = 277/418 (66%), Gaps = 5/418 (1%)
Query: 40 NKTTVAGQIVRRVFQILFYXXXXXXXXXXXXXXXYGLVSDSHTHHFHPRKWYPPLLASTV 99
+ T+AG++ R +F+ L + GL+S S THHFH +KWYPPLLAS
Sbjct: 44 TQQTIAGKLFRTLFKGLLFSQLTLISLLVIVLTIRGLISAS-THHFHLKKWYPPLLASVA 102
Query: 100 CAGILGFTWQWIISCHPTKAFKVAFWLSPLLTCAMGILFVCIGSPVSLSAGVIALVFAVI 159
+GI WQ I +P++A K FWLSP+LTC++GIL V IGS V G + ++FA+
Sbjct: 103 VSGIASLAWQCIFIYNPSRAVKATFWLSPILTCSVGILLVLIGSAVDAGIGAVFVLFAIT 162
Query: 160 QSLYGCWVSPRFEYATRILSVSIASPPEKTQGXXXXXXXXXXXXXXXXXAGIGGARALEN 219
QSLYGCW++PR EY +ILS++ A PP +T+ GIGGA +
Sbjct: 163 QSLYGCWITPRLEYTDKILSLATAFPPARTREVVCLSIIVSVVYSGFLVTGIGGATS--T 220
Query: 220 RTKLAPLFILVILLSLGWSMQFLKNAMQVTISRVKYVHFAGGAAEIDTRVAICDTIKYLT 279
RT L LFI VI++SL W+MQ +KN QV ISR +YV+FA G ++D A T+K+LT
Sbjct: 221 RTNLDILFISVIIISLAWTMQVIKNVQQVAISRARYVNFAHG-EDMDAWNAFRITMKHLT 279
Query: 280 GSVCIGSILVPIFGLFRGFARSMSLIGGHTDEFMFSCVSCYMGIASVLVNFGNRWGFVHV 339
GS+C+GS LVPI RG RS++L+ G +DE M+S C+ IA+ L+ GNRWGFVHV
Sbjct: 280 GSICVGSTLVPIIVFIRGSIRSVNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHV 339
Query: 340 GVYNKGFVQASSDVWEMF-NRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVSGIWSLAMH 398
G Y+KGF++ASSD W+ F + GLE+LID DLT FCF S V+ GA+ SL +GIW L +H
Sbjct: 340 GTYDKGFMEASSDTWKKFRSTTGLEKLIDSDLTSSFCFLSAVSVGAVSSLTAGIWMLLIH 399
Query: 399 KSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQFDSTIPVRLEQLH 456
K YA+EV++Y F+IGYF+ R+ +AW QACV AYYVAY+E+PQS +FD TIP R+++L
Sbjct: 400 KDYALEVTLYAFIIGYFVGRVGLAWLQACVLAYYVAYSEDPQSMRFDGTIPQRIQRLQ 457
>AT5G17830.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr5:5893382-5895367 FORWARD LENGTH=474
Length = 474
Score = 282 bits (721), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/426 (37%), Positives = 237/426 (55%), Gaps = 23/426 (5%)
Query: 43 TVAGQIVRRVFQILFYXXXXXXXXXXXXXXXYGLVSDSHTHHFHPRKWYPPLLASTVCAG 102
T++G+ R +F +FY GLV + + +FHP+KWY PLL+S +G
Sbjct: 45 TLSGRFFRCLFTCIFYTQLTLISIFVILLTLRGLVC-TKSPNFHPKKWYTPLLSSVAVSG 103
Query: 103 ILGFTWQWIISCHPTKAFKVAFWLSPLLTCAMGILFVCIG--SPVSLSAGVIALVFAVIQ 160
+L W C+ K FW +PL T ++G+ + + +PV L G + + ++++
Sbjct: 104 VLSIAWNCFFVCNIRATVKATFWFTPLFTISVGLFLILLDKSNPVVLWIGALLVFYSIVT 163
Query: 161 SLYGCW-VSPRFEYATRILSVSIASPPEKTQGXXXXXXXXXXXXXXXXXAGIGGARALEN 219
++YG V+ R E+ + +S + P +T+ AGIGGA A
Sbjct: 164 AVYGSLHVTNRHEFTFQTMSTATGILPARTRAIAVVSVIISVFYSDFLVAGIGGATA--T 221
Query: 220 RTKLAPLFILVILLSLGWSMQFLKNAMQVTISRVKYVHFAGGAAEIDTRVAICD----TI 275
T+L LFI +I+++L W+MQ +KN +V IS+ YV+F+ D + CD T+
Sbjct: 222 GTRLDILFISIIVINLAWTMQVIKNVQEVAISKAIYVYFSR-----DDLMNACDALGVTL 276
Query: 276 KYLTGSVCIGSILVPIFGLFRGFARSMSLIGGHTDEFMFSCVSCYMGIASVLVNFGNRWG 335
K GSVCIGS LVP+ LFRG R + + S C IA+ ++ GNR+G
Sbjct: 277 KKQLGSVCIGSTLVPLIVLFRGTIRCCN------RDIYASTPGCNW-IANHIILGGNRYG 329
Query: 336 FVHVGVYNKGFVQASSDVWEMFNRV-GLEQLIDLDLTGVFCFFSGVAAGAICSLVSGIWS 394
FVHVG +NKG QASSD W F + EQLID D+T CFFS + GAI +L +G+W
Sbjct: 330 FVHVGAHNKGLRQASSDTWRRFRTIPEFEQLIDFDITSSICFFSAMGIGAIAALTAGVWE 389
Query: 395 LAMHKSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQFDSTIPVRLEQ 454
L + K + E++IY F+IGYF+ R++ AW QACV YYVAY+E+PQ+ +FD TIP R+E+
Sbjct: 390 LLIDKDHYFELTIYAFIIGYFVGRVSSAWLQACVMGYYVAYSEDPQNDRFDDTIPQRIER 449
Query: 455 LHRSQA 460
+A
Sbjct: 450 QKIEKA 455
>AT5G13760.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr5:4442102-4444565 FORWARD LENGTH=569
Length = 569
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 189/366 (51%), Gaps = 5/366 (1%)
Query: 92 PPLLASTVCAGILGFTWQWIISCHPTKAFKVAFWLSPLLTCAMGILFVCIGSPVSLSAGV 151
P + A+++ + IL F WQ P W + L++ + GIL +C P + + GV
Sbjct: 190 PQVEAASLLSIILAFLWQMAFRIWPDFMIHFILWSTFLMSLSSGILLLCFQMPATDAVGV 249
Query: 152 IALVFAVIQSLYGCWVSPRFEYATRILSVSIASPPEKTQGXXXXXXXXXXXXXXXXXAGI 211
+ F++ LY CWV+ R ++ ++IL S+ P K I
Sbjct: 250 CLIAFSIGNGLYACWVTRRIKFCSKILVKSL-EPVSKFSDLNLPTYYMLAAGFLWMSMWI 308
Query: 212 GGARALENRTKLAPLFILVILLSLGWSMQFLKNAMQVTISRVKYVHFAGGAAEIDTRVAI 271
G N PL I+ ++LSL W+ + ++N + +T+SRV +++ G + TR +
Sbjct: 309 FGVIGALN-FYFPPLVIIGLVLSLAWTTEVMRNIVNLTVSRVIALYYLRGM-QSSTRFSF 366
Query: 272 CDTIKYLTGSVCIGSILVPIFGLFRGFARSMSLIGGHTDEFMFSCVSCYMGIASVLVNFG 331
+ GS C+GS+ VP R AR ++L+ G DEFMF C +C + + + G
Sbjct: 367 QRALSRNLGSACLGSLFVPTIEALRILARGLNLLKGE-DEFMFCCANCCLRLMDFIFEHG 425
Query: 332 NRWGFVHVGVYNKGFVQASSDVWEMFNRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVSG 391
N W FV + Y KGFV+AS D W++F + +++D D+T CF +G+ +G +C +V+
Sbjct: 426 NGWAFVQIAAYGKGFVRASQDTWKLFEDEDMVEIVDADITSSICFLTGICSGCVCLIVAA 485
Query: 392 IWSLAMHKSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQF-DSTIPV 450
W+ ++K + +S+ F IGY M R+++A P ACV YY YAENP+S F D I
Sbjct: 486 AWTHTVYKPFTATISLLAFFIGYLMTRISMALPHACVGCYYTCYAENPESRFFEDKVIKT 545
Query: 451 RLEQLH 456
R + +
Sbjct: 546 RQDMIK 551
>AT1G25500.3 | Symbols: | Plasma-membrane choline transporter
family protein | chr1:8955437-8957294 REVERSE LENGTH=430
Length = 430
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 12/241 (4%)
Query: 227 FILVILLSLGWSMQFLKNAMQVTISRVKY---VHFAGGAAEIDTRVAICDTIKYLT---- 279
++V+ +SL W+ L N + V +S + + H + ++ D+++Y
Sbjct: 176 LLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSF 235
Query: 280 GSVCIGSILVPIFGLFRGFARSM-SLIGGHTDEFMFSCVSCYMGIASVLVNFGNRWGFVH 338
GS+C GS+ R R S I G +E + CV + LV F N++ +V
Sbjct: 236 GSICYGSLFTAAIRTLRWEIRGFRSKICG--NECLLCCVDFLFHLVETLVRFFNKYAYVQ 293
Query: 339 VGVYNKGFVQASSDVWEMFNRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVSGIWSLAMH 398
+ VY KGF +++ D WE+F G+E L+ D +G + G I GIW+ +
Sbjct: 294 IAVYGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKY 353
Query: 399 KSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQ-FDSTIPVRL-EQLH 456
I V+ L+G + L + ++ V++ Y+ +AE+P Q +D+ + E LH
Sbjct: 354 SDRVIMVASTAMLMGMVLVGLGMVVVESAVTSIYICFAEDPLLIQRWDADFYTEMSEVLH 413
Query: 457 R 457
R
Sbjct: 414 R 414
>AT1G25500.2 | Symbols: | Plasma-membrane choline transporter
family protein | chr1:8955437-8957793 REVERSE LENGTH=488
Length = 488
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 12/241 (4%)
Query: 227 FILVILLSLGWSMQFLKNAMQVTISRVKY---VHFAGGAAEIDTRVAICDTIKYLT---- 279
++V+ +SL W+ L N + V +S + + H + ++ D+++Y
Sbjct: 234 LLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSF 293
Query: 280 GSVCIGSILVPIFGLFRGFARSM-SLIGGHTDEFMFSCVSCYMGIASVLVNFGNRWGFVH 338
GS+C GS+ R R S I G +E + CV + LV F N++ +V
Sbjct: 294 GSICYGSLFTAAIRTLRWEIRGFRSKICG--NECLLCCVDFLFHLVETLVRFFNKYAYVQ 351
Query: 339 VGVYNKGFVQASSDVWEMFNRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVSGIWSLAMH 398
+ VY KGF +++ D WE+F G+E L+ D +G + G I GIW+ +
Sbjct: 352 IAVYGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKY 411
Query: 399 KSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQ-FDSTIPVRL-EQLH 456
I V+ L+G + L + ++ V++ Y+ +AE+P Q +D+ + E LH
Sbjct: 412 SDRVIMVASTAMLMGMVLVGLGMVVVESAVTSIYICFAEDPLLIQRWDADFYTEMSEVLH 471
Query: 457 R 457
R
Sbjct: 472 R 472
>AT1G25500.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr1:8955595-8957793 REVERSE LENGTH=432
Length = 432
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 227 FILVIL-LSLGWSMQFLKNAMQVTISRVKY---VHFAGGAAEIDTRVAICDTIKYLT--- 279
++LV+L +SL W+ L N + V +S + + H + ++ D+++Y
Sbjct: 233 WLLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTS 292
Query: 280 -GSVCIGSILVPIFGLFRGFARSM-SLIGGHTDEFMFSCVSCYMGIASVLVNFGNRWGFV 337
GS+C GS+ R R S I G +E + CV + LV F N++ +V
Sbjct: 293 FGSICYGSLFTAAIRTLRWEIRGFRSKICG--NECLLCCVDFLFHLVETLVRFFNKYAYV 350
Query: 338 HVGVYNKGFVQASSDVWEMFNRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVSGIWSLAM 397
+ VY KGF +++ D WE+F G+E L+ D +G + G I GIW+
Sbjct: 351 QIAVYGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIK 410
Query: 398 HKSYAIEVSIYGFLIG 413
+ I V+ L+G
Sbjct: 411 YSDRVIMVASTAMLMG 426