Miyakogusa Predicted Gene
- Lj1g3v3960360.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3960360.1 Non Chatacterized Hit- tr|B9SJM2|B9SJM2_RICCO
Polygalacturonase, putative OS=Ricinus communis
GN=RCO,41.01,2e-19,Pectin lyase-like,Pectin lyase fold/virulence
factor; Glyco_hydro_28,Glycoside hydrolase, family 28;,CUFF.31726.1
(149 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07820.1 | Symbols: | Pectin lyase-like superfamily protein ... 128 1e-30
AT1G43090.1 | Symbols: | Pectin lyase-like superfamily protein ... 119 8e-28
AT1G43080.1 | Symbols: | Pectin lyase-like superfamily protein ... 117 2e-27
AT4G13760.1 | Symbols: | Pectin lyase-like superfamily protein ... 116 5e-27
AT1G43100.1 | Symbols: | Pectin lyase-like superfamily protein ... 114 3e-26
AT2G15460.1 | Symbols: | Pectin lyase-like superfamily protein ... 114 3e-26
AT2G15450.1 | Symbols: | Pectin lyase-like superfamily protein ... 113 4e-26
AT3G07840.1 | Symbols: | Pectin lyase-like superfamily protein ... 113 5e-26
AT2G40310.1 | Symbols: | Pectin lyase-like superfamily protein ... 111 2e-25
AT3G07830.1 | Symbols: | Pectin lyase-like superfamily protein ... 109 6e-25
AT2G26620.1 | Symbols: | Pectin lyase-like superfamily protein ... 109 6e-25
AT2G15470.1 | Symbols: | Pectin lyase-like superfamily protein ... 109 7e-25
AT5G48140.1 | Symbols: | Pectin lyase-like superfamily protein ... 108 2e-24
AT1G17150.1 | Symbols: | Pectin lyase-like superfamily protein ... 100 2e-22
AT2G33160.1 | Symbols: | glycoside hydrolase family 28 protein ... 97 3e-21
AT1G78400.1 | Symbols: | Pectin lyase-like superfamily protein ... 96 1e-20
AT4G18180.1 | Symbols: | Pectin lyase-like superfamily protein ... 89 1e-18
AT1G05650.1 | Symbols: | Pectin lyase-like superfamily protein ... 86 1e-17
AT1G05660.1 | Symbols: | Pectin lyase-like superfamily protein ... 82 9e-17
AT1G80170.1 | Symbols: | Pectin lyase-like superfamily protein ... 82 9e-17
AT1G02790.1 | Symbols: PGA4 | polygalacturonase 4 | chr1:610681-... 82 1e-16
AT2G43870.1 | Symbols: | Pectin lyase-like superfamily protein ... 81 3e-16
AT5G44840.1 | Symbols: | Pectin lyase-like superfamily protein ... 80 5e-16
AT2G43890.1 | Symbols: | Pectin lyase-like superfamily protein ... 79 1e-15
AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein ... 77 3e-15
AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein ... 77 4e-15
AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein ... 75 1e-14
AT2G41850.1 | Symbols: PGAZAT, ADPG2 | polygalacturonase absciss... 74 3e-14
AT1G48100.1 | Symbols: | Pectin lyase-like superfamily protein ... 71 3e-13
AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein ... 70 8e-13
AT2G43860.1 | Symbols: | Pectin lyase-like superfamily protein ... 69 1e-12
AT3G07970.1 | Symbols: QRT2 | Pectin lyase-like superfamily prot... 69 1e-12
AT1G60590.1 | Symbols: | Pectin lyase-like superfamily protein ... 68 2e-12
AT3G57510.1 | Symbols: ADPG1 | Pectin lyase-like superfamily pro... 67 3e-12
AT1G56710.1 | Symbols: | Pectin lyase-like superfamily protein ... 66 7e-12
AT2G43880.1 | Symbols: | Pectin lyase-like superfamily protein ... 66 9e-12
AT3G26610.1 | Symbols: | Pectin lyase-like superfamily protein ... 64 3e-11
AT3G15720.2 | Symbols: | Pectin lyase-like superfamily protein ... 64 4e-11
AT3G15720.1 | Symbols: | Pectin lyase-like superfamily protein ... 63 7e-11
AT1G02460.1 | Symbols: | Pectin lyase-like superfamily protein ... 63 7e-11
AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein ... 62 1e-10
AT3G59850.1 | Symbols: | Pectin lyase-like superfamily protein ... 62 1e-10
AT5G27530.1 | Symbols: | Pectin lyase-like superfamily protein ... 61 3e-10
AT4G32370.1 | Symbols: | Pectin lyase-like superfamily protein ... 61 4e-10
AT4G01890.1 | Symbols: | Pectin lyase-like superfamily protein ... 60 5e-10
AT4G35670.1 | Symbols: | Pectin lyase-like superfamily protein ... 60 6e-10
AT5G17200.1 | Symbols: | Pectin lyase-like superfamily protein ... 58 2e-09
AT5G44830.1 | Symbols: | Pectin lyase-like superfamily protein ... 56 1e-08
AT1G65570.1 | Symbols: | Pectin lyase-like superfamily protein ... 54 3e-08
AT5G14650.1 | Symbols: | Pectin lyase-like superfamily protein ... 49 1e-06
>AT3G07820.1 | Symbols: | Pectin lyase-like superfamily protein |
chr3:2496597-2498028 REVERSE LENGTH=391
Length = 391
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 7 SALFLLLVSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPNGKYKL 66
S +F++ + +A + VF + G +S DITQA + + C S+SPSK++IP G++KL
Sbjct: 8 STIFIICLLGISANAEVFTI---GSSSGSDITQALLKAFTSACQSSSPSKVVIPKGEFKL 64
Query: 67 EQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAA 126
++++RGPCKAP+EV + GT++A D + G +WV FG ++ F L+G G FDG+G AA
Sbjct: 65 GEIEMRGPCKAPIEVTLQGTVKA--DGNAIQGKEKWVVFGNIDGFKLNGGGAFDGEGNAA 122
Query: 127 WKQNDCKKRWNCKKLSM 143
W+ N+C K + CKKL +
Sbjct: 123 WRVNNCHKTFECKKLPI 139
>AT1G43090.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:16217197-16219150 REVERSE LENGTH=444
Length = 444
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 7 SALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTS-PSKILIPNGK 63
S LF+++ S + +VF+V ++G +G D AF +VWK C S SKI +P G
Sbjct: 14 SFLFIVVASRPTIRPKVFNVRRYGSRPDGKTDNANAFTSVWKHACTRISGSSKIYVPKGT 73
Query: 64 YKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQG 123
+ L V+ GPCK P+E +DGT+ AP +P + + W+ F Y+N ++SG GT DGQG
Sbjct: 74 FYLGGVEFVGPCKNPIEFVIDGTLLAPANPRDIKQD-TWINFRYINNLSISGSGTLDGQG 132
Query: 124 EAAWKQNDCKKRWNCKKLSM 143
+ +W NDC K NC KL+M
Sbjct: 133 KYSWPLNDCHKNTNCPKLAM 152
>AT1G43080.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:16213995-16215828 REVERSE LENGTH=404
Length = 404
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
Query: 7 SALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTS-PSKILIPNGK 63
S LF+ + S + +VF+V ++G +G D AF +VWK C S SKI +P G
Sbjct: 14 SFLFIAVASRPTIRPKVFNVRRYGSRPDGKTDNANAFTSVWKRACTRISGSSKIYVPKGT 73
Query: 64 YKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQG 123
+ L V+ GPCK P+E +DGT+ AP +P + + W+ F Y+N ++SG GT DGQG
Sbjct: 74 FYLGGVEFVGPCKNPIEFVIDGTLLAPANPRDIKQD-TWINFRYINNLSISGSGTLDGQG 132
Query: 124 EAAWKQNDCKKRWNCKKLSMV 144
+ +W NDC K NC KL+M
Sbjct: 133 KYSWPLNDCHKNTNCPKLAMT 153
>AT4G13760.1 | Symbols: | Pectin lyase-like superfamily protein |
chr4:7988058-7989648 FORWARD LENGTH=404
Length = 404
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Query: 4 IITSALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTS-PSKILIP 60
+ S LF+++ S + ++F+V + G S+G D T F +VW C S SKI +P
Sbjct: 11 LCVSFLFIVVASRPTIRPKMFNVQRHGSKSDGKTDNTNVFTSVWNRACRRKSGSSKIYVP 70
Query: 61 NGKYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFD 120
G + L V+ GPCK P+E +DGT+ AP +P + + W++F Y+N ++SG GT D
Sbjct: 71 KGTFYLGGVEFVGPCKNPIEFLIDGTLLAPANPNNIKQD-TWIKFKYINDLSISGSGTLD 129
Query: 121 GQGEAAWKQNDCKKRWNCKKLSMV 144
GQG+ +W NDC K NC KL+M
Sbjct: 130 GQGKQSWPLNDCHKNPNCPKLAMT 153
>AT1G43100.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:16220519-16222473 REVERSE LENGTH=444
Length = 444
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 7 SALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTS-PSKILIPNGK 63
S LF+ + S + +VF+V ++G +G D AF +VWK C S SKI +P GK
Sbjct: 14 SFLFIAVASRPTIRPKVFNVRRYGSRPDGKTDNANAFTSVWKRACTRISGSSKIYVPKGK 73
Query: 64 YKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQG 123
+ L V+ GP K P+E +DGT+ AP +P + + W+ F Y+N ++SG GT DGQG
Sbjct: 74 FYLGGVEFVGPYKNPIEFVIDGTLLAPANPRDIKQD-TWINFRYINNLSISGSGTLDGQG 132
Query: 124 EAAWKQNDCKKRWNCKKLSM 143
+ +W NDC K NC +L+M
Sbjct: 133 KYSWPLNDCHKNTNCPELAM 152
>AT2G15460.1 | Symbols: | Pectin lyase-like superfamily protein |
chr2:6750934-6752647 FORWARD LENGTH=402
Length = 402
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 81/139 (58%), Gaps = 4/139 (2%)
Query: 9 LFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTS-PSKILIPNGKYK 65
F+++ S + + +VF+V + G +G D AF ++W C S SKI +P G +
Sbjct: 16 FFIVVASRSTVRPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFY 75
Query: 66 LEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEA 125
L V+ GPCK P+E +DGT+ AP +P+ + + W+ F Y+N ++SG GT DGQG+
Sbjct: 76 LGGVEFVGPCKNPIEFIIDGTLLAPANPSDIKQD-TWINFRYINNLSISGSGTLDGQGKQ 134
Query: 126 AWKQNDCKKRWNCKKLSMV 144
+W NDC NC KL+M
Sbjct: 135 SWPHNDCHTNPNCPKLAMT 153
>AT2G15450.1 | Symbols: | Pectin lyase-like superfamily protein |
chr2:6747536-6749256 FORWARD LENGTH=404
Length = 404
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 4/142 (2%)
Query: 9 LFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTS-PSKILIPNGKYK 65
F+++ S + + +VF+V + G +G D AF ++W C S SKI +P G +
Sbjct: 16 FFIVVASRSTVRPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFY 75
Query: 66 LEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEA 125
L V+ GPCK P+E +DGT+ AP +P+ + + W+ F Y+N ++SG GT DGQG+
Sbjct: 76 LGGVEFVGPCKNPIEFIIDGTLLAPANPSDIKQD-TWINFRYINNLSISGSGTLDGQGKQ 134
Query: 126 AWKQNDCKKRWNCKKLSMVKEY 147
+W NDC NC KL+M +
Sbjct: 135 SWPHNDCHTNPNCPKLAMTMGF 156
>AT3G07840.1 | Symbols: | Pectin lyase-like superfamily protein |
chr3:2501893-2503475 REVERSE LENGTH=401
Length = 401
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 89/139 (64%), Gaps = 5/139 (3%)
Query: 5 ITSALFLLLVSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPNGKY 64
I++ LF++ + +A + VF+V G + DITQA + + C + + SK++I G++
Sbjct: 7 ISAVLFVISLLGFSANAEVFNV---GGSPGSDITQALLKAFTSACQAPTASKVVITKGEF 63
Query: 65 KLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGE 124
KL ++++ GPCKAP+E+ + GT++A D + G +WV F +N F L+G G FDG+G
Sbjct: 64 KLGEIEMTGPCKAPVEINLQGTLKA--DGKAIQGKERWVVFLRINGFKLNGGGIFDGEGN 121
Query: 125 AAWKQNDCKKRWNCKKLSM 143
AAW+ N+C K + CKKL +
Sbjct: 122 AAWRVNNCHKTFECKKLPI 140
>AT2G40310.1 | Symbols: | Pectin lyase-like superfamily protein |
chr2:16834065-16835711 FORWARD LENGTH=404
Length = 404
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Query: 4 IITSALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTS-PSKILIP 60
+ S LF+ + S + + F+V + G +G D F ++W C S SKI +P
Sbjct: 11 LCVSFLFIFVASRPTIRPKTFNVQRHGSKPDGKTDNANVFTSIWSRACKRKSGSSKIYVP 70
Query: 61 NGKYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFD 120
G + L V+ GPCK P+E +DGT+ AP +P+ + + W+ F Y+N ++SG GT D
Sbjct: 71 KGIFYLGGVEFVGPCKNPIEFVIDGTLLAPANPSDIKQD-TWINFRYINNLSISGSGTLD 129
Query: 121 GQGEAAWKQNDCKKRWNCKKLSMV 144
GQG+ +W NDC K NC KL+M
Sbjct: 130 GQGKQSWPLNDCHKNLNCPKLAMT 153
>AT3G07830.1 | Symbols: | Pectin lyase-like superfamily protein |
chr3:2499454-2500966 REVERSE LENGTH=397
Length = 397
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 4 IITSALFLLLVSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPNGK 63
I T + LL +ANA +V + + DITQA + + C S +P K++IP G+
Sbjct: 7 ISTIFVICLLGFSANAH----EVLRLTSSPGSDITQALLRAFTTACQSPTPRKVVIPKGQ 62
Query: 64 YKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQG 123
+KL ++ + GPCK+P+E+ + GT+ A D + G +WV F ++ F L+G GTFDG+G
Sbjct: 63 FKLGEIMMSGPCKSPVEITLLGTVLA--DGNSIHGKEKWVVFQRMDGFRLNGGGTFDGEG 120
Query: 124 EAAWKQNDCKKRWNCKKLSM 143
AAW+ N+C K + CKKL +
Sbjct: 121 NAAWRVNNCHKTFECKKLPI 140
>AT2G26620.1 | Symbols: | Pectin lyase-like superfamily protein |
chr2:11325163-11326835 REVERSE LENGTH=402
Length = 402
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 4/136 (2%)
Query: 11 LLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTS-PSKILIPNGKYKLE 67
+++ S + + +VF+V + G +G D T AF ++W C S SKI +P G + L
Sbjct: 18 IVVASRSTIRPKVFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLG 77
Query: 68 QVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
V+ GPCK P+E +DGT+ AP +P + + W+ F Y+N ++SG GT DGQG+ +W
Sbjct: 78 GVEFVGPCKNPIEFIIDGTLLAPANPNDIKQD-TWINFRYINNLSISGSGTLDGQGKQSW 136
Query: 128 KQNDCKKRWNCKKLSM 143
NDC K NC KL++
Sbjct: 137 PLNDCHKNPNCPKLAI 152
>AT2G15470.1 | Symbols: | Pectin lyase-like superfamily protein |
chr2:6754330-6756051 FORWARD LENGTH=404
Length = 404
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Query: 9 LFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTS-PSKILIPNGKYK 65
F+++ S + + +VF+V + G +G D AF ++W C S SKI +P G +
Sbjct: 16 FFIVVASRSTVRPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFY 75
Query: 66 LEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEA 125
L V+ G CK P+E +DGT+ AP +P+ + + W+ F Y+N ++SG GT DGQG+
Sbjct: 76 LGGVEFVGLCKNPIEFIIDGTLLAPANPSDIKQD-TWINFRYINNLSISGSGTLDGQGKQ 134
Query: 126 AWKQNDCKKRWNCKKLSMVKEY 147
+W NDC NC KL+M +
Sbjct: 135 SWPHNDCHTNPNCPKLAMTMGF 156
>AT5G48140.1 | Symbols: | Pectin lyase-like superfamily protein |
chr5:19518907-19520412 REVERSE LENGTH=395
Length = 395
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 6/137 (4%)
Query: 7 SALFLLLVSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPNGKYKL 66
SA F+ + +A +++F++ DIT A + + E C + S ++IP G+YKL
Sbjct: 9 SAFFVFCLLGLSANAKIFNINS---PPGSDITNALLKAFNEACQFPTKSTVMIPKGEYKL 65
Query: 67 EQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAA 126
++ + GPCKAP+ + + GT++A +G +WV F +N F L+G G FDG+G AA
Sbjct: 66 GEIVMMGPCKAPIRIALLGTVKAD---GNANGKEKWVAFRNINGFKLNGGGVFDGEGNAA 122
Query: 127 WKQNDCKKRWNCKKLSM 143
W+ N+C K +NCKKL +
Sbjct: 123 WRVNNCHKTFNCKKLPI 139
>AT1G17150.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:5865707-5867495 FORWARD LENGTH=402
Length = 402
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 8 ALFLLLVSAANAQS----RVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPN 61
L LLL++ ++ +VFDV +G +G D T AF WK+ C PSK+ IP
Sbjct: 13 GLLLLLIAVTTSRPITRPKVFDVRSYGAKGDGKMDNTNAFTNAWKDACRWNGPSKMYIPL 72
Query: 62 GKYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQ-WVRFGYLNFFTLSGVGTFD 120
G + L V GPC + +DGT+ AP P D + W+ F Y+N+ T+ G GT D
Sbjct: 73 GTFYLGGVTFVGPCDGKISFVIDGTLLAP--PNNDDIKKEIWINFRYINYLTVFGDGTLD 130
Query: 121 GQGEAAWKQNDCKKRWNCKKLSM 143
GQG+ +W DC+K NC KL++
Sbjct: 131 GQGKKSWSLIDCQKDNNCPKLAI 153
>AT2G33160.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr2:14053404-14056246 FORWARD LENGTH=664
Length = 664
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 1 MLNIITSALFLLLVSAAN---AQSRVFDVTKFGV--NSNGDITQAFIAVWKEGCA-STSP 54
+L + +LF L ++ Q ++FDV +G +S D AF W E C S
Sbjct: 6 LLILCVPSLFFFLAASTKEYPGQPKIFDVRNYGARADSQRDNAFAFTKAWNEACQWSYGR 65
Query: 55 SKILIPNGKYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLS 114
S + IP+G + L QV GPCK+ + + GT+ AP +P ++ +W+ F Y++ T++
Sbjct: 66 STVYIPSGIFYLRQVTFSGPCKSSITFFIRGTLLAPRNPYAINQE-EWILFKYVDNLTVT 124
Query: 115 GVGTFDGQGEAAWKQNDCKKRWNCKKLSM 143
G G DGQG +W NDC K NC+ L+M
Sbjct: 125 GGGLLDGQGSYSWPLNDCNKNTNCRTLAM 153
>AT1G78400.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:29498281-29499682 REVERSE LENGTH=404
Length = 404
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 22 RVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKAPM 79
+VFDV +G +G D T AF WK+ C ++ IP G + L V GPCK+ +
Sbjct: 33 KVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVAFTGPCKSRI 92
Query: 80 EVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKRWNCK 139
+ GT+ AP DP + + W+ F Y+++ T+SG G DGQG +W N+C++ NC+
Sbjct: 93 SFIIKGTLLAPKDPNAIKQD-SWIIFRYVDYLTVSGGGILDGQGSYSWPLNNCRQTHNCR 151
Query: 140 KLSM 143
L M
Sbjct: 152 ALPM 155
>AT4G18180.1 | Symbols: | Pectin lyase-like superfamily protein |
chr4:10065626-10067317 FORWARD LENGTH=414
Length = 414
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 20 QSRVF--DVTKFGVNSNG--DITQAFIAVWKEGCASTSPS-KILIPNGKYKLEQVDLRGP 74
+S VF DV FG +N D T+AF+A W + C S+S S ++IP G++ + + GP
Sbjct: 29 KSSVFLVDVRSFGARANDHRDHTKAFVAAWDKACKSSSSSVNLIIPRGEFSVGSLRFSGP 88
Query: 75 CKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKK 134
C + V ++A D ++ W++FG++N TL+G GTFDGQG AW N+C
Sbjct: 89 CTNVSNLTV--RVKASTDLSKYRSGGGWIQFGWINGLTLTGGGTFDGQGALAWPFNNCTS 146
Query: 135 RWNCKKL 141
NCK L
Sbjct: 147 DSNCKLL 153
>AT1G05650.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:1690264-1692126 REVERSE LENGTH=394
Length = 394
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 10 FLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLE 67
L + +++ S VF+V FG +G D T AF+ W+ C S + + +++P G + L+
Sbjct: 14 LLTFIDVSSSASIVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAASATVVVPTGTFLLK 73
Query: 68 QVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
+ GPCK+ + QV GT+ AP D + W+ F +N F+L G GTFD +G W
Sbjct: 74 VITFGGPCKSKITFQVTGTVVAPEDYRTFGNSGSWILFNKVNRFSLVG-GTFDARGSGFW 132
Query: 128 KQNDCKKR-WNC 138
C+K NC
Sbjct: 133 ---SCRKSGQNC 141
>AT1G05660.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:1694286-1696058 REVERSE LENGTH=394
Length = 394
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 7 SALFLLL--VSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNG 62
S LF LL + + + S VF+V FG +G D T AF+ W+ C S S + +++P G
Sbjct: 9 SLLFTLLTFIDVSISASNVFNVVSFGAKPDGVTDSTGAFLKAWQGACVSASSATVVVPKG 68
Query: 63 KYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQ 122
+ L+ + GPCK+ + QV GT+ AP D + W+ F +N F+L G GTFD +
Sbjct: 69 TFLLKVITFGGPCKSKITFQVAGTVIAPEDYRTFGNSGFWILFNKVNRFSLVG-GTFDAR 127
Query: 123 GEAAWKQNDCKKR-WNC 138
W C+K NC
Sbjct: 128 ANGFW---SCRKSGQNC 141
>AT1G80170.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:30153646-30155683 REVERSE LENGTH=444
Length = 444
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 22 RVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIP-NGKYKLEQVDLRGPCKAP 78
R+ V FG NG D T+AF WK C+S ++IL+P N L +DL GPCKA
Sbjct: 51 RLLHVGNFGAKGNGVTDDTKAFADAWKTACSSKVKTRILVPENYTCLLRPIDLSGPCKAR 110
Query: 79 MEVQVDGTIEAPIDPAQLDG--NYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKK 134
+ +Q+ GTI AP DP +G +W+ F L+ T+ G GT +G G+ W+++ CK
Sbjct: 111 LTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERS-CKH 167
>AT1G02790.1 | Symbols: PGA4 | polygalacturonase 4 |
chr1:610681-612225 REVERSE LENGTH=422
Length = 422
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 14 VSAANAQSRVFDVTKFGVNSNGDIT--QAFIAVWKEGCASTSPSKILIPNGKYKLEQVDL 71
++A + V+D+TKFG +G +AF+ W + C S P+ +L+P G + V
Sbjct: 42 LAANSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIF 101
Query: 72 RGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQND 131
GPCK+ + V V GTI A +W F ++ L+G GTF G+GEA WK +
Sbjct: 102 AGPCKSKVTVNVIGTIIATTSGYATP---EWFLFERVDNLVLTGTGTFHGKGEAVWKADG 158
Query: 132 CKKRWNC 138
C K+ C
Sbjct: 159 CGKKVQC 165
>AT2G43870.1 | Symbols: | Pectin lyase-like superfamily protein |
chr2:18166615-18168264 REVERSE LENGTH=384
Length = 384
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 11/135 (8%)
Query: 9 LFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKL 66
+S+ +AQS ++V FG +G D T+AF+AVW+ CAS+ P I++P G++ L
Sbjct: 8 FVFFFISSCSAQS--YNVLSFGAKPDGKTDATKAFMAVWQTACASSRPVTIVVPKGRFLL 65
Query: 67 EQVDLRGP-CKA-PMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGE 124
V G CK P+ ++DGT+ AP D + W+ F +L+ T+ G G D +G
Sbjct: 66 RSVTFDGSKCKPKPVTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYG-GVLDARGA 124
Query: 125 AAWKQNDCKKRW-NC 138
+ W DCKK NC
Sbjct: 125 SLW---DCKKSGKNC 136
>AT5G44840.1 | Symbols: | Pectin lyase-like superfamily protein |
chr5:18104851-18107127 REVERSE LENGTH=381
Length = 381
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 2 LNIITSALFLL-LVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSK-I 57
+ II +FLL L+ + +++DV +FG + NG D ++AF+ W C S SK
Sbjct: 1 MEIILRGVFLLTLLHSILVNGQIYDVLEFGADGNGITDDSKAFVKAWSAMCGSGGNSKTF 60
Query: 58 LIPNGK-YKLEQVDLRGPCKAP-MEVQVDGTIEAPIDPAQLDGN--YQWVRFGYLNFFTL 113
+IP+ K + L+ + +GPCK+P ++V+ DG I API+ A ++WV F + T+
Sbjct: 61 IIPSNKTFLLQPLTFQGPCKSPSVQVKFDGKIVAPINKAAWSDYKLFRWVSFKEIIGLTV 120
Query: 114 SGVGTFDGQGEAAWKQ 129
+G GT G+G + WKQ
Sbjct: 121 NGSGTIHGRGSSFWKQ 136
>AT2G43890.1 | Symbols: | Pectin lyase-like superfamily protein |
chr2:18176924-18178390 FORWARD LENGTH=392
Length = 392
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 8/127 (6%)
Query: 10 FLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLE 67
FLL+ S+ A + ++V FG +G D T+AF+ W+ C S + + +P G + L+
Sbjct: 17 FLLMKSSTAASN--YNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVTVTVPRGSFLLK 74
Query: 68 QVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
V+ RGPC++ + Q+ GTI AP D L + W+ F +N ++ G GT D +G + W
Sbjct: 75 PVEFRGPCRSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIG-GTLDARGASFW 133
Query: 128 KQNDCKK 134
C+K
Sbjct: 134 A---CRK 137
>AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein |
chr3:4648607-4650226 REVERSE LENGTH=445
Length = 445
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 14 VSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRG 73
V+ A DV G +G + A + S I +P G+Y +E ++ +G
Sbjct: 61 VTGAKPGGASLDVKASGAKGDGKTDDSAAFAAAWKEACAAGSTITVPKGEYLVESLEFKG 120
Query: 74 PCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSG-VGTFDGQGEAAWKQNDC 132
PCK P+ ++++G +AP + W+ F L FTL+G FDGQG AWK NDC
Sbjct: 121 PCKGPVTLELNGNFKAPATVKTTKPHAGWIDFENLADFTLNGNKAIFDGQGSLAWKANDC 180
Query: 133 KKRWNCKKLSM 143
K C L +
Sbjct: 181 AKTGKCNSLPI 191
>AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:8327382-8329622 FORWARD LENGTH=460
Length = 460
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 15 SAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNG-KYKLEQVDL 71
++ ++ + +V FG +G D TQAF++ W + C STS S L+P G +Y +
Sbjct: 58 TSRHSGKNLVNVDTFGAAGDGVSDDTQAFVSAWSKAC-STSKSVFLVPEGRRYLVNATKF 116
Query: 72 RGPCKAPMEVQVDGTIEAPIDPAQLDGNYQ--WVRFGYLNFFTLSGVGTFDGQGEAAWKQ 129
GPC+ + +Q+DGTI AP +P+ D +Q W+ F L G G DG G W
Sbjct: 117 NGPCEQKLIIQIDGTIVAPDEPSNWDSKFQRIWLEFSKLKGVVFQGKGVIDGSGSKWWAA 176
Query: 130 NDCKK 134
+ CKK
Sbjct: 177 S-CKK 180
>AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein |
chr3:2505813-2507438 REVERSE LENGTH=444
Length = 444
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 55 SKILIPNGKYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLS 114
S I +P G+Y +E ++ +GPCK P+ ++++G +AP + W+ F + FTL+
Sbjct: 101 STITVPKGEYMVESLEFKGPCKGPVTLELNGNFKAPATVKTTKPHAGWIDFENIADFTLN 160
Query: 115 G-VGTFDGQGEAAWKQNDCKKRWNCKKLSM 143
G FDGQG AWK NDC K C L +
Sbjct: 161 GNKAIFDGQGSLAWKANDCAKTGKCNSLPI 190
>AT2G41850.1 | Symbols: PGAZAT, ADPG2 | polygalacturonase abscission
zone A. thaliana | chr2:17461918-17464059 REVERSE
LENGTH=433
Length = 433
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 26 VTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGPCKAPMEVQ 82
V+ FG +G D TQAF+ WK+ C+S +L+P G Y L+ + L GPC + + VQ
Sbjct: 70 VSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCNSILTVQ 129
Query: 83 VDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSG--VGTFDGQGEAAWKQNDCKK 134
+ GT+ A + +W+ F +N ++ G G DG GE W QN CK+
Sbjct: 130 IFGTLSASQKRSDYKDISKWIMFDGVNNLSVDGGDTGVVDGNGETWW-QNSCKR 182
>AT1G48100.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:17766921-17769625 FORWARD LENGTH=475
Length = 475
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 23 VFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKAPME 80
VFDVT FG +G D T AF WK CA S + G +K+ GPCK +
Sbjct: 79 VFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITSTIFSGPCKPGLV 138
Query: 81 VQVDGTIEAPIDP---AQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKRWN 137
Q+DG + P P + D QW+ F L+ FT SG GT +G G+ W CK
Sbjct: 139 FQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDL-PCKPHRG 197
Query: 138 ---------CKKLSMVKEYMS 149
C +M++ +MS
Sbjct: 198 PDGSSSSGPCASPTMIRFFMS 218
>AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:26566579-26568729 REVERSE LENGTH=468
Length = 468
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 23 VFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGPCKAPM 79
+ +V F + +G D TQAFI W C++ + S +L+P G+ Y + GPC+ +
Sbjct: 66 LVNVDSFNASGDGVSDDTQAFIRAWTMACSAPN-SVLLVPQGRSYLVNATKFDGPCQEKL 124
Query: 80 EVQVDGTIEAPIDPAQLDGNY--QWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKK 134
+Q+DGTI AP +P+Q D + W++F L G G DG G W + CKK
Sbjct: 125 IIQIDGTIIAPDEPSQWDPKFPRNWLQFSKLQGVVFQGNGVIDGSGTKWWAAS-CKK 180
>AT2G43860.1 | Symbols: | Pectin lyase-like superfamily protein |
chr2:18162945-18164428 REVERSE LENGTH=405
Length = 405
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 10 FLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLE 67
F L+ S A+ +V +G +G D T+AF+A W CAS +P+ I++P G++ +
Sbjct: 19 FTLISSLAHPIPSTLNVLSYGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVG 78
Query: 68 QVDLRG-PCK-APMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEA 125
+ G CK AP+ +++ G+I AP D + + W+ F + ++ G G D QG +
Sbjct: 79 NLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYG-GILDAQGTS 137
Query: 126 AWKQNDCKKR--WNC 138
WK CK NC
Sbjct: 138 LWK---CKNNGGHNC 149
>AT3G07970.1 | Symbols: QRT2 | Pectin lyase-like superfamily protein
| chr3:2541006-2543370 FORWARD LENGTH=439
Length = 439
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 16 AANAQSRVFDVTKFGVNSNG-DITQAFIAVWKEGCASTSPSKILIP-NGKYKLEQVDLRG 73
A + R F+V FG +NG D ++AF+ W+ C+ST I+ P N Y L+ V G
Sbjct: 63 APRSSPRSFNVNTFGAKANGNDDSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTFSG 122
Query: 74 PCKAPMEV-QVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDC 132
PCK+ + + ++ G IEA +P+ W+ F +N + G G DG G W ++ C
Sbjct: 123 PCKSSLIIFKIYGRIEAWENPSDYKERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKS-C 181
Query: 133 K 133
K
Sbjct: 182 K 182
>AT1G60590.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:22314426-22316867 REVERSE LENGTH=540
Length = 540
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 21 SRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGP-CKA 77
S+ F+V FG +G D TQAF A W C + + I+ P+ + + + GP C+A
Sbjct: 120 SQQFNVLDFGAKGDGMSDDTQAFEAAWASACKVEASTMIIPPDYIFLVGPISFSGPYCQA 179
Query: 78 PMEVQVDGTIEAPIDPAQLDGNYQW-VRFGYLNFFTLSGVGTFDGQGEAAWKQN 130
+ Q++G I AP D G W + F L+ T+ G G DG+G W+Q+
Sbjct: 180 NIVFQLEGMIVAPTDTESWGGGLMWWIEFTKLSGITIQGNGVIDGRGTVWWQQD 233
>AT3G57510.1 | Symbols: ADPG1 | Pectin lyase-like superfamily
protein | chr3:21283546-21285842 REVERSE LENGTH=431
Length = 431
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 9 LFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YK 65
L L+ ++ V+ FG +G D TQAF WK+ C++ + L+P GK Y
Sbjct: 53 LSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKTYL 112
Query: 66 LEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSG--VGTFDGQG 123
L+ RGPCK+ Q+ GT+ A + W+ +N ++ G G +G G
Sbjct: 113 LKSTRFRGPCKSLRNFQILGTLSASTKRSDYKDKNHWLILEDVNNLSIDGGSTGIINGNG 172
Query: 124 EAAWKQNDCK 133
+ W QN CK
Sbjct: 173 KTWW-QNSCK 181
>AT1G56710.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:21258206-21259922 REVERSE LENGTH=434
Length = 434
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 18 NAQSRVFDVTKFGV--NSNGDITQAFIAVWKEGCASTSPSK--ILIP-NGKYKLEQVDLR 72
N VFDVT FG + + D T AF W C ST P +L+P + ++
Sbjct: 42 NIAPTVFDVTSFGAIGDCSTDDTSAFKMAWDAACMSTGPKSALLLVPYTFCFLVKPTTFN 101
Query: 73 GPCKAPMEVQVDGTIEAPIDPAQLDGNY--QWVRFGYLNFFTLSGVGTFDGQGEAAWK 128
GPC+ + +Q+DG I +P P NY QW+ F +N ++ G G +G+G+ W
Sbjct: 102 GPCRTNLVLQIDGFIVSPDGPRSWPSNYQRQWMMFYRVNGLSIQGSGVINGRGQKWWN 159
>AT2G43880.1 | Symbols: | Pectin lyase-like superfamily protein |
chr2:18173034-18174482 FORWARD LENGTH=394
Length = 394
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 24 FDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKAPMEV 81
F+V ++G +G D T++F+ W C S + + + +P G Y ++ + GPCK +
Sbjct: 31 FNVQRYGARGDGRADATKSFLTAWSLACGSRARAMVYVPRGTYLVKNLVFWGPCKNIITF 90
Query: 82 QVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKR 135
+ DGT+ AP + + + W+ F +N ++ G GT D +G W C+K+
Sbjct: 91 KNDGTLVAPANYWDIGNSGYWILFAKVNRISVYG-GTIDARGAGYW---SCRKK 140
>AT3G26610.1 | Symbols: | Pectin lyase-like superfamily protein |
chr3:9777025-9780267 FORWARD LENGTH=470
Length = 470
Score = 63.9 bits (154), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 23 VFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNG-KYKLEQVDLRGPCKAPM 79
VF++ +G +G D ++A + WK C K+ IP G ++ ++ V L+GPCK
Sbjct: 66 VFNIFSYGAKGDGVSDDSKALVGAWKAACKVVG-GKVEIPAGTQFLVKAVTLQGPCKEET 124
Query: 80 EVQVDGTIEAP--IDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
VQ++G + AP I +QW+ F +++ T+ G GT +G+G W
Sbjct: 125 VVQIEGILVAPEKIGSWPNSSLFQWLNFKWVSHLTIQGSGTLNGRGYNWW 174
>AT3G15720.2 | Symbols: | Pectin lyase-like superfamily protein |
chr3:5325329-5327617 REVERSE LENGTH=452
Length = 452
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 7 SALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNG-K 63
S FL + +++NA DVT+FG +G D +QAF+ W+ C+ T + ++P G
Sbjct: 10 SLFFLQIFTSSNA----LDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMT 65
Query: 64 YKLEQVDLRGPCKA-PMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQ 122
+ L+ + +G CK+ P+ VQ+ G + AP QW+ F + + G G +GQ
Sbjct: 66 FMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGNWKGDKDQWILFTDIEGLVIEGDGEINGQ 125
Query: 123 GEAAWKQNDCKKRW-NCKKLSM 143
G + W+ + + +C L +
Sbjct: 126 GSSWWEHKGSRPTFRSCNNLRL 147
>AT3G15720.1 | Symbols: | Pectin lyase-like superfamily protein |
chr3:5325329-5327457 REVERSE LENGTH=456
Length = 456
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 7 SALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNG-K 63
S FL + +++NA DVT+FG +G D +QAF+ W+ C+ T + ++P G
Sbjct: 11 SLFFLQIFTSSNA----LDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMT 66
Query: 64 YKLEQVDLRGPCKA-PMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQ 122
+ L+ + +G CK+ P+ VQ+ G + AP QW+ F + + G G +GQ
Sbjct: 67 FMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGNWKGDKDQWILFTDIEGLVIEGDGEINGQ 126
Query: 123 GEAAWKQ 129
G + W+
Sbjct: 127 GSSWWEH 133
>AT1G02460.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:504897-507099 REVERSE LENGTH=491
Length = 491
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 17 ANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGC--ASTSPSKILIPNG-KYKLEQVDL 71
A+ + +++V K+G +G D T+AF W C + + S +L+P G + ++
Sbjct: 82 ADDNNGIYNVRKYGAVGDGETDDTEAFKTAWDSSCNNENNTDSVLLVPYGYTFMIQSTIF 141
Query: 72 RGPCKAPMEVQVDGTIEAPIDPAQLDGNY---QWVRFGYLNFFTLSGVGTFDGQGEAAWK 128
GPC++ QVDGTI P P N QW+ F +N L G G DG+G+ W
Sbjct: 142 TGPCRSYQFFQVDGTIVTPDGPESWPSNISKRQWLVFYRVNGMALKGEGVIDGRGQKWWD 201
Query: 129 QNDCKKRWNCKKLSMV 144
CK + K ++V
Sbjct: 202 L-PCKPHRSVNKSAIV 216
>AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:3515478-3517807 REVERSE LENGTH=532
Length = 532
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 21 SRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGP-CKA 77
S+VF+V FG +G D T+AF A W C + ++ P Y + + GP C+A
Sbjct: 116 SQVFNVMDFGAKGDGKCDDTKAFEAAWVAACKIEASVMLVPPEYTYLVGPISFSGPYCQA 175
Query: 78 PMEVQVDGTIEAPIDPAQL-DGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQN 130
+ Q+DGTI AP D G W+ F L + G G DG+G W+Q+
Sbjct: 176 NIVFQLDGTIIAPTDSKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQD 229
>AT3G59850.1 | Symbols: | Pectin lyase-like superfamily protein |
chr3:22109343-22111566 REVERSE LENGTH=388
Length = 388
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 21 SRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGP-CK- 76
++ +++ +G +G D T+AF +W + CAS P IL+P G++ L + G CK
Sbjct: 20 AQTYNILSYGAKPDGKTDSTKAFTVLWAKACASVKPVTILVPKGRFLLRSIIFDGSKCKR 79
Query: 77 APMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKRW 136
+ ++ GT+ AP D + W+ F +L+ ++ G G D QG + W CKK
Sbjct: 80 KSVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISVYG-GVLDAQGASLW---SCKKSG 135
Query: 137 -NC 138
NC
Sbjct: 136 KNC 138
>AT5G27530.1 | Symbols: | Pectin lyase-like superfamily protein |
chr5:9717503-9721097 FORWARD LENGTH=458
Length = 458
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 4 IITSALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCA-STSPSKILIP 60
I+ ++ + + ++++V KFG +G D + AF+ W C + + + IP
Sbjct: 33 ILRISILINFICFGLVNGQIYNVLKFGAEGDGQTDDSNAFLQAWNATCGGEENINTLFIP 92
Query: 61 NGK-YKLEQVDLRGPCKA-PMEVQVDGTIEAPIDPAQLDG--NYQWVRFGYLNFFTLSGV 116
+GK Y L+ ++ +GPCK+ +++Q+DG I AP + + W+ F + + G
Sbjct: 93 SGKTYLLQPIEFKGPCKSTSIKLQLDGIIVAPSNITSWSNPKSQTWISFSGVPGLMIDGS 152
Query: 117 GTFDGQGEAAWKQNDCKKRWNCKKLSM 143
GT +G+G + W + NC L++
Sbjct: 153 GTINGRGSSFW---EALHICNCNNLTI 176
>AT4G32370.1 | Symbols: | Pectin lyase-like superfamily protein |
chr4:15625558-15627517 FORWARD LENGTH=342
Length = 342
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 22 RVFDVTKFGVNSNG---DITQAFIAVWKEGCASTSPSK---ILIPNGKYKLEQVDLRGPC 75
R+ + F +++N D +QAF WK C +P+ ++ N Y L+ RGPC
Sbjct: 32 RILSIKDFIIDTNHTIIDYSQAFQEAWKGLCEDETPNGSALVIRKNETYTLQPSTFRGPC 91
Query: 76 -KAPMEVQVDGTIEAPIDPA--QLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDC 132
+ + +Q+DG +E P P + N W+ F + ++G G + GEA WK
Sbjct: 92 VSSNIHIQIDGKLEGPRKPIYWKNKENRSWLGFKDVEGLVINGSGVLNPHGEAWWKSVSL 151
Query: 133 KKR 135
KR
Sbjct: 152 SKR 154
>AT4G01890.1 | Symbols: | Pectin lyase-like superfamily protein |
chr4:816210-818428 FORWARD LENGTH=468
Length = 468
Score = 60.1 bits (144), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 23 VFDVTKFGVNSNG--DITQAFIAVWKEGCAST---SPSKILIPNG-KYKLEQVDLRGPCK 76
V+DV K+G NG D T +F W C++ + S + +P G + + GPC+
Sbjct: 64 VYDVRKYGAVGNGVADDTVSFKTAWDSACSNNKNNTASVLHVPYGFTFMIRSTIFTGPCR 123
Query: 77 APMEVQVDGTIEAPID-----PAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
+ QVDGTI P D P+ L+ QW+ F +N L G G DG+G+ W
Sbjct: 124 SYQYFQVDGTI-VPRDGPKSWPSSLN-KRQWLAFYRINGMALQGAGVIDGRGQNWW 177
>AT4G35670.1 | Symbols: | Pectin lyase-like superfamily protein |
chr4:16914996-16917201 FORWARD LENGTH=394
Length = 394
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 24 FDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSK-ILIPNGK-YKLEQVDLRGPCKAP- 78
++V F +G D ++AF+ W C K +LIP+GK + L+ +GPCK+
Sbjct: 24 YNVLNFDAKGDGQTDDSEAFLQAWTAACGGDGDIKTLLIPSGKTFLLQPTVFQGPCKSSS 83
Query: 79 MEVQVDGTIEAPIDPAQLDG--NYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQN 130
++VQ+DGTI AP D + W++F ++ + G GT D +G + W+ N
Sbjct: 84 IKVQLDGTIVAPSDKFAWSDPISRMWIKFSTVSGLIIVGSGTIDSRGSSFWELN 137
>AT5G17200.1 | Symbols: | Pectin lyase-like superfamily protein |
chr5:5653524-5655336 REVERSE LENGTH=421
Length = 421
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 26 VTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGPCKAP-MEV 81
VT FG +G D T+AF+ W+ C KIL+P GK + L+ + GPCK+ + +
Sbjct: 41 VTSFGAIGDGKTDDTKAFLKAWEAVCKGGHNRKILVPQGKTFMLKPLTFIGPCKSSTISL 100
Query: 82 QVDGTIEAPIDPAQLDGNY-QWVRFGYLNFFTLSGVGTFDGQGEAAW 127
+ G + AP G Y W+ F +N ++G GT DG+G W
Sbjct: 101 SIRGNLVAP-GYTWYAGRYTTWISFDSINGLVVTGGGTIDGRGSLWW 146
>AT5G44830.1 | Symbols: | Pectin lyase-like superfamily protein |
chr5:18100128-18101885 REVERSE LENGTH=332
Length = 332
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 49 CASTSPSK-ILIP-NGKYKLEQVDLRGPCKAP-MEVQVDGTIEAPIDPAQLDGN--YQWV 103
C S SK LIP N + L+ + +GPCK+P ++V+ DG I API+ A + ++WV
Sbjct: 2 CGSGGNSKTFLIPSNQTFLLQPLTFQGPCKSPSVQVKFDGKIVAPINKAAWSESKLFRWV 61
Query: 104 RFGYLNFFTLSGVGTFDGQGEAAWKQ 129
F + T++G GT G+G + WKQ
Sbjct: 62 SFKEIIGLTVNGSGTIHGRGSSFWKQ 87
>AT1G65570.1 | Symbols: | Pectin lyase-like superfamily protein |
chr1:24374098-24375846 REVERSE LENGTH=397
Length = 397
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 24 FDVTKFGVNSNGDI--TQAFIAVWKEGCASTSPSKILIPNGKYKLE-QVDLRG-PCKA-P 78
+V FG N NG + +AF W C I +P G+Y + +V G CK+
Sbjct: 31 LNVLSFGANPNGIVESAKAFSDAWDAACGVEDSVVIYVPKGRYLVSGEVRFEGESCKSRE 90
Query: 79 MEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKR-WN 137
+ +++DGT+ P D + L W F ++ T+ G G+FD +G W CK +N
Sbjct: 91 ITLRIDGTLIGPQDYSLLGKKENWFSFSGVHNVTVLG-GSFDAKGSTLWS---CKANGYN 146
Query: 138 CKKLSMVKEYM 148
C + + +M
Sbjct: 147 CPEGATTLRFM 157
>AT5G14650.1 | Symbols: | Pectin lyase-like superfamily protein |
chr5:4724509-4726328 FORWARD LENGTH=435
Length = 435
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 16 AANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLR 72
A S +V G +G D T+AF W+ C + S +L+P+G + + V
Sbjct: 43 AEGGSSGTINVLDHGAKGDGTSDDTKAFEDAWQVAC-KVAASTLLVPSGSTFLVGPVSFL 101
Query: 73 G-PCKAPMEVQVDGTIEAPIDPAQL-DGNYQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
G CK + Q++G I AP + G QW+ F L T+ G G DG+G W
Sbjct: 102 GKECKEKIVFQLEGKIIAPTSASAWGSGLLQWIEFKALQGITIKGKGIIDGRGSVWW 158