Miyakogusa Predicted Gene

Lj1g3v3388970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3388970.1 tr|B4FR04|B4FR04_MAIZE Peptidyl-prolyl cis-trans
isomerase OS=Zea mays PE=2 SV=1,37.5,5e-19,no description,NULL;
seg,NULL; SUBFAMILY NOT NAMED,NULL; PEPTIDYL-PROLYL CIS-TRANS
ISOMERASE,Peptidy,CUFF.30617.1
         (243 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20810.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans is...   261   3e-70
AT3G10060.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans is...   104   5e-23
AT5G05420.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans is...    49   3e-06

>AT1G20810.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans
           isomerase family protein | chr1:7232025-7233367 FORWARD
           LENGTH=232
          Length = 232

 Score =  261 bits (667), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 166/197 (84%), Gaps = 1/197 (0%)

Query: 45  KSRGVVTVAALSPSQSRR-STAVLISLLPLTVDWLTTPPPAAARERRNKKNIPIDEYLTS 103
           +SR +  V A S   SRR ++ +L+S +PLT  ++ TP  + ARERR++K IP++EY T 
Sbjct: 29  QSRPINQVVAFSVPISRRDASIILLSSIPLTSFFVLTPSSSEARERRSRKVIPLEEYSTG 88

Query: 104 PDGLKYYDLVEGKGSVAEKGSTVQVHFDCLYRGVTAVSSRESKILAGNRTIAQPYEFKVG 163
           P+GLK+YD+ EGKG VA +GST QVHFDC YR +TA+S+RESK+LAGNR+IAQPYEFKVG
Sbjct: 89  PEGLKFYDIEEGKGPVATEGSTAQVHFDCRYRSITAISTRESKLLAGNRSIAQPYEFKVG 148

Query: 164 APPGRERKRDFVDNPNGLFSAQASPKPPAAMYTIVEGMRVGGKRTVLVPPENGYGKRGMN 223
           + PG+ERKR+FVDNPNGLFSAQA+PKPP AMY I EGM+VGGKRTV+VPPE GYG++GMN
Sbjct: 149 STPGKERKREFVDNPNGLFSAQAAPKPPPAMYFITEGMKVGGKRTVIVPPEAGYGQKGMN 208

Query: 224 EIPPGATFEMNIELLQV 240
           EIPPGATFE+NIELL+V
Sbjct: 209 EIPPGATFELNIELLRV 225


>AT3G10060.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans
           isomerase family protein | chr3:3102291-3103801 FORWARD
           LENGTH=230
          Length = 230

 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 24/160 (15%)

Query: 84  AAARERRNKKNIPIDEYLTSPDGLKYYDLVEGKGSVAEKGSTVQVHFDCLYRGVTAVSSR 143
           + +R       +P  ++ T P+GLKYYD+  G G+ A KGS V VH+   ++G+T ++SR
Sbjct: 84  STSRRALRASKLPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVHYVAKWKGITFMTSR 143

Query: 144 ESKILAGNRTIAQPYEFKVGAPPGRERKRDFVDNPNGLFSAQASPKPPAAMYTIVEGMRV 203
           +   + G      PY F VG     + +R  V                  +   VEGMRV
Sbjct: 144 QGLGVGGG----TPYGFDVG-----QSERGNVLK---------------GLDLGVEGMRV 179

Query: 204 GGKRTVLVPPENGYGKRGMNEIPPGATFEMNIELLQVKTT 243
           GG+R V+VPPE  YGK+G+ EIPP AT E++IELL +K +
Sbjct: 180 GGQRLVIVPPELAYGKKGVQEIPPNATIELDIELLSIKQS 219


>AT5G05420.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans
           isomerase family protein | chr5:1604040-1604823 REVERSE
           LENGTH=143
          Length = 143

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query: 198 VEGMRVGGKRTVLVPPENGYGKRGMNEIPPGATFEMNIELLQVK 241
           + GM VGGKR + +PPE GYG  G   IPP +    ++ELL VK
Sbjct: 100 LNGMLVGGKRKLTIPPEMGYGAEGAGSIPPDSWLVFDVELLNVK 143