Miyakogusa Predicted Gene

Lj1g3v3182310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3182310.1 Non Chatacterized Hit- tr|I1Q1U6|I1Q1U6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,48.28,5e-19,MYB_LIKE,Myb-like domain; HTH_MYB,Myb domain; no
description,Homeodomain-like; SANT  SWI3, ADA2,
N-C,NODE_71482_length_1086_cov_15.684162.path1.1
         (252 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41020.1 | Symbols:  | myb family transcription factor | chr5...   296   8e-81
AT5G02320.2 | Symbols: MYB3R-5 | myb domain protein 3r-5 | chr5:...    49   2e-06
AT5G02320.1 | Symbols: ATMYB3R5, MYB3R-5 | myb domain protein 3r...    49   2e-06
AT4G32730.1 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1, MY...    49   2e-06
AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | H...    49   3e-06

>AT5G41020.1 | Symbols:  | myb family transcription factor |
           chr5:16425883-16427649 REVERSE LENGTH=588
          Length = 588

 Score =  296 bits (758), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 135/249 (54%), Positives = 181/249 (72%), Gaps = 1/249 (0%)

Query: 1   MILHCKSHPEVRDCWKEIGAVLPKRPHISVYYRAHILFERDETRKWTPDEFEVLRKLQNQ 60
           M++ CK++P+++ CWKEI + LP R + SVY+RAH +FE      WT ++ E++ + Q  
Sbjct: 336 MVMECKAYPQLKGCWKEITSALPWRTYNSVYHRAHTIFEAGSQGIWTKEDIELVMEFQKT 395

Query: 61  HGSDWKKIAGVLGKHPVHVKDAWRRIRQTDTNKGRWTQDEYQQLFDLVNKDLRARAAEEC 120
           HG+DWK +A  +GKH  HVKDAWRR R     KG W ++EYQ LFDLVNKDLR +A +E 
Sbjct: 396 HGNDWKTLADAMGKHRKHVKDAWRRGRLAGKKKGHWMREEYQNLFDLVNKDLRMKAFKE- 454

Query: 121 RKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQLTSPMVADGVWSDTDDYRLLNALY 180
           + SKHGML+DN+ W AIS+    R+   CC KWY+QL SPMVA G+W++ DDYRLL  L 
Sbjct: 455 KHSKHGMLKDNIPWMAISDVLETRDHVTCCQKWYEQLISPMVAKGMWANVDDYRLLEELL 514

Query: 181 TLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQYIGQHGTKSFAEQVEILAKRFCPDLLE 240
            LDA  +++VDWDNLLE+R G+  RKRWNQM+ +IG   +K+FAEQVEIL+ R+CPD+ E
Sbjct: 515 KLDAACIDDVDWDNLLENRDGEACRKRWNQMIIHIGVPKSKTFAEQVEILSDRYCPDIAE 574

Query: 241 AREAFDSKP 249
            RE FD++P
Sbjct: 575 DREDFDNRP 583


>AT5G02320.2 | Symbols: MYB3R-5 | myb domain protein 3r-5 |
           chr5:483445-486347 REVERSE LENGTH=548
          Length = 548

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 24/215 (11%)

Query: 1   MILHCKSHPEVRDCWKEIGAVLPKRPHISVYYRAHILFERDETRKWTPDEFEVLRK-LQN 59
           +   C S  E   C+      +     +S + R      R     WTP+E E LR+ ++ 
Sbjct: 33  LAASCSSASEGSGCFFLKSPEIATPATVSSFPRRTSGPMRRAKGGWTPEEDETLRRAVEK 92

Query: 60  QHGSDWKKIAGVLGKHP-VHVKDAWRRIRQTDTNKGRWTQDEYQQLFDLVNKDLRARAAE 118
             G  WKKIA    +   V     W+++   +  KG WTQ+E  ++ +LV K   A+   
Sbjct: 93  YKGKRWKKIAEFFPERTEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVKKYGPAK--- 149

Query: 119 ECRKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQLTSPMVADGVWSDTDDYRLLNA 178
                          W  I+     R   +C  +W+  L +P +    W+  ++  L+N+
Sbjct: 150 ---------------WSVIAKSLPGRIGKQCRERWHNHL-NPGIRKDAWTVEEESALMNS 193

Query: 179 LYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQ 213
                 Y  +  +   +L  R+ +  +  WN  ++
Sbjct: 194 HRM---YGNKWAEIAKVLPGRTDNAIKNHWNSSLK 225


>AT5G02320.1 | Symbols: ATMYB3R5, MYB3R-5 | myb domain protein 3r-5
           | chr5:483445-486347 REVERSE LENGTH=548
          Length = 548

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 24/215 (11%)

Query: 1   MILHCKSHPEVRDCWKEIGAVLPKRPHISVYYRAHILFERDETRKWTPDEFEVLRK-LQN 59
           +   C S  E   C+      +     +S + R      R     WTP+E E LR+ ++ 
Sbjct: 33  LAASCSSASEGSGCFFLKSPEIATPATVSSFPRRTSGPMRRAKGGWTPEEDETLRRAVEK 92

Query: 60  QHGSDWKKIAGVLGKHP-VHVKDAWRRIRQTDTNKGRWTQDEYQQLFDLVNKDLRARAAE 118
             G  WKKIA    +   V     W+++   +  KG WTQ+E  ++ +LV K   A+   
Sbjct: 93  YKGKRWKKIAEFFPERTEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVKKYGPAK--- 149

Query: 119 ECRKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQLTSPMVADGVWSDTDDYRLLNA 178
                          W  I+     R   +C  +W+  L +P +    W+  ++  L+N+
Sbjct: 150 ---------------WSVIAKSLPGRIGKQCRERWHNHL-NPGIRKDAWTVEEESALMNS 193

Query: 179 LYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQ 213
                 Y  +  +   +L  R+ +  +  WN  ++
Sbjct: 194 HRM---YGNKWAEIAKVLPGRTDNAIKNHWNSSLK 225


>AT4G32730.1 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1,
           MYB3R1 | Homeodomain-like protein |
           chr4:15791039-15794252 FORWARD LENGTH=776
          Length = 776

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 24/176 (13%)

Query: 40  RDETRKWTPDEFEVL-RKLQNQHGSDWKKIAGVL-GKHPVHVKDAWRRIRQTDTNKGRWT 97
           R    +WTP+E EVL + ++   G +WKKIA     +  V     W+++   +  KG W+
Sbjct: 32  RSTKGQWTPEEDEVLCKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWS 91

Query: 98  QDEYQQLFDLVNKDLRARAAEECRKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQL 157
           ++E   + DLV               K+G  +    W  IS     R   +C  +W+  L
Sbjct: 92  KEEDNTIIDLV--------------EKYGPKK----WSTISQHLPGRIGKQCRERWHNHL 133

Query: 158 TSPMVADGVWSDTDDYRLLNALYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQ 213
            +P +    W+  ++  L+ A      Y  +  +    L  RS +  +  WN  V+
Sbjct: 134 -NPGINKNAWTQEEELTLIRAHQI---YGNKWAELMKFLPGRSDNSIKNHWNSSVK 185


>AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 |
           Homeodomain-like protein | chr4:15791039-15795643
           FORWARD LENGTH=995
          Length = 995

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 24/176 (13%)

Query: 40  RDETRKWTPDEFEVL-RKLQNQHGSDWKKIAGVL-GKHPVHVKDAWRRIRQTDTNKGRWT 97
           R    +WTP+E EVL + ++   G +WKKIA     +  V     W+++   +  KG W+
Sbjct: 32  RSTKGQWTPEEDEVLCKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWS 91

Query: 98  QDEYQQLFDLVNKDLRARAAEECRKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQL 157
           ++E   + DLV               K+G  +    W  IS     R   +C  +W+  L
Sbjct: 92  KEEDNTIIDLV--------------EKYGPKK----WSTISQHLPGRIGKQCRERWHNHL 133

Query: 158 TSPMVADGVWSDTDDYRLLNALYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQ 213
            +P +    W+  ++  L+ A      Y  +  +    L  RS +  +  WN  V+
Sbjct: 134 -NPGINKNAWTQEEELTLIRAHQI---YGNKWAELMKFLPGRSDNSIKNHWNSSVK 185