Miyakogusa Predicted Gene

Lj1g3v1943890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943890.1 Non Chatacterized Hit- tr|I1JUK8|I1JUK8_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
GN=G,79.44,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; VPRBP
PROTEIN-RELATED,NULL,CUFF.28222.1
         (267 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | c...   286   7e-78

>AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 |
            chr4:15145936-15152939 FORWARD LENGTH=1883
          Length = 1883

 Score =  286 bits (733), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 126/159 (79%), Positives = 145/159 (91%)

Query: 1    MLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRIVPSLD 60
            ++LWNGVLWDRR+   V RFDQFTDYGGGGFHP+ NEVIINSE+WD+R F+LLR VPSLD
Sbjct: 1613 LILWNGVLWDRRIPEKVRRFDQFTDYGGGGFHPSRNEVIINSEIWDMRTFKLLRSVPSLD 1672

Query: 61   QTAITFNARGDVMYAILRRNLEVVMSAFDARRVKHPLFAAFRTVDAINYSDIATTPVDRC 120
            QTAITFN+RGDV+YA+LRRN+E VMSA   RRVKHPLFAAFRT+DAINYSDIAT PVDRC
Sbjct: 1673 QTAITFNSRGDVIYAMLRRNIEDVMSAVHTRRVKHPLFAAFRTLDAINYSDIATIPVDRC 1732

Query: 121  VLDFATEPTDSFVGLITMDDQNEMYASARVYEIGRCRPT 159
            +LDFATEPTDSF+GLITM+DQ +M++SAR+YEIGR RPT
Sbjct: 1733 LLDFATEPTDSFLGLITMEDQEDMFSSARMYEIGRRRPT 1771